RNA id: XM_026925034.2


Basic Information

Item Value
RNA id XM_026925034.2
length 1974
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC113533136
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15269159 ~ 15272159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtaCTGATTTATGTTATGCTTTCATTTGGCTAGtctgtattcatttattatccCTTCTATTCCAATATTTACGGTAAGCAATAGACAAACCGGAAGTAGACACTCTTGCTGCTGTAGAGATTAGGGGAAGTTActtattttgttgttattatcgCTAtcgttttattattaatatctcATAAGAAGGGGTTGAAAGTAAAGTTCGGGTGTATGAGAGGCTGATTTATCGAAGAGGACGATGCTCTCGGAGGACACGGCGACCAGCAGCAGCGTTTCTTTCCACAGTAGGCTGGCCTCGGTCATGGCCGTGGTGGCTCAGTCGGCTGTGGCCGAAATCAGCAAACTGTACGATGACGGGCTGCTGGTGCTGCGCCTGGAGGTCTGCCGCAAAGACTCCGAAATCGAGGCGCTGAAGAAAAAACTGGAGACGGTTGAAAACGAGCTGCAGCTTCTGAAAGAGTCTCAGCGCTCAGAGACCCGCAGCTCGACCCCCAGCCTGCTCCCTGCTCCCTGTGCACACGGACAAGACCTTGTAGAATGCAAAGAGAGGACAAATCAGCATCTTTCTTGGAAACATCAACCTGATAATGATGTGTGTAATGGAAAGGAAAATGATCATGCAGGGGAAATTAATTACAAATCCTCAGAAGAAATAAATTCGcaggacattgtcacaaaggaAACAATGCCCACCCTTACAGAGCCACAACCTTCCACAGATGATCTGAACCAGTCAACATTCTGCGAGGAAGATTGTGGACCAGAGTttcagaaaaagacagaacagGGGATACAGACAGTTACTTTAGATGAGAGCAAAGTAGAGTGTGTTGTAATCGAGGACAGAGAAACGCAGCCGTGGTCATCCATGGAGAACTGCGTGGAACATGCAGAGGACCCTGACTGCTCTATTGTAACCGAGGAAGACGGACATCCGCTGATCTCCTCCGTGTGGAGTGTCGGTTCTAGCACATCCAGTCCTGTGGATGATTTGACTATGACAAACAGACTTAATGTAGAAGAAATGAGACAGCAAAGGATGCCGCAGCAGCCCAGGAGCGAAGGAGGATCAACAGACCTAAACCCATCGCGACAGGTACAACACAGAGCAAACGCAGCGGTCCAGCCCAGGCTCTTGCTTCCTTCAAGAACTCATGAACGTGTCACACTCTTAAGCAGTAGCATAAGCCAGAATCGGAACCGAGGAGGTTTCCCAGTAAATGACATTGCTATAGCCAGGCTACCTCAGAGGAGAAAGCCAATGAGAGAGAAATGGTTCATGTGTTCATTCTGTGGCAAAAGCTTTGACCGCATCAGCCACCTTCAGATGCACCACAGaattcacactggagagaaaccATTCCACTGCAGCATGTGCGGGAAGAGTTTCTCTCAGCAAAGCAACTTACGCACACACCAGAAAACGCACAAAGATCTCAGGAcacaaagtaaaacattttgaaaataagaCAGTTAGAatgtttgtgtcatttttattttctagtaTGTAAACCAACACCTAGCCATCTTggttttgctcattttatttttacaataaacaaaaagtTGGTAACACTTCTCTGTTACTGTCTTTACAAAATACACAGtagaatacagaaaaaaaatacacaaaattcatGAAAATATAAATTGCTTAATGGGTTTGTCTTACCATATTTACTCTTATTTACATGAACATCTTTCACAAATACAGCACACTGCACTGGTGAACTTTGAAGCTaagtatttataatgcattaataaagaTCAGCCAGGTGCTAAACTAGGTTGTAACTTGTAAAATTATCAATGTGTCATCATTTGATGGTAAAAAGCTTCAGCTATTTAGCAACAGTATGTAGTAATACAGTGTTGAAAGGTAATGAAAATACGCTGAGGTAATTAATACGGAGAAATATACCTCTGAAAACACAAGTTGTTAAAGCCACAAGAGCTAACCATGTtagctccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379941 lncRNA downstream 39149 15229603 ~ 15230010 (-) False LOC113533479
XR_003403412.2 lncRNA downstream 164696 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA downstream 164699 15095677 ~ 15104460 (-) False LOC113533367
TU379867 lncRNA downstream 203379 15064126 ~ 15065780 (-) True G320767
TU379728 lncRNA downstream 609216 14571684 ~ 14659943 (-) True G320640
TU379997 lncRNA upstream 9276 15281435 ~ 15281638 (-) True G320864
TU380000 lncRNA upstream 10201 15282360 ~ 15282740 (-) True G320867
TU380001 lncRNA upstream 11476 15283635 ~ 15284425 (-) True G320868
TU380003 lncRNA upstream 13479 15285638 ~ 15285941 (-) True G320870
TU380004 lncRNA upstream 13925 15286084 ~ 15286877 (-) True G320871
XM_034314544.1 mRNA downstream 37579 15222778 ~ 15231580 (-) False LOC113533479
XM_026925644.2 mRNA downstream 37905 15222778 ~ 15231254 (-) True LOC113533479
XM_034314545.1 mRNA downstream 39419 15222778 ~ 15229740 (-) False LOC113533479
XM_026925031.2 mRNA downstream 48283 15216728 ~ 15220876 (-) True LOC113533134
XM_034314838.1 mRNA downstream 56137 15192241 ~ 15213022 (-) True vapal
XM_026925032.2 mRNA upstream 2762 15274921 ~ 15279966 (-) True si:ch211-155e24.3
XM_026925177.2 mRNA upstream 32119 15304278 ~ 15306780 (-) True LOC113533213
XM_026925696.2 mRNA upstream 56853 15329012 ~ 15332661 (-) True plekhj1
XM_026925736.2 mRNA upstream 66578 15338737 ~ 15349506 (-) True LOC113533539
XM_026925734.2 mRNA upstream 191457 15463616 ~ 15489260 (-) True onecut3b
TU379938 other downstream 39903 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 523672 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3720720 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4740909 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6295947 8969781 ~ 8973212 (-) False LOC113542985
TU380215 other upstream 415099 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 415099 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1085415 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1347474 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 1701529 16973688 ~ 16973770 (-) False trnal-uaa_3

Expression Profile