RNA id: XM_026925041.2


Basic Information

Item Value
RNA id XM_026925041.2
length 1894
RNA type mRNA
GC content 0.40
exon number 8
gene id si:dkey-10o6.2
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15242029 ~ 15248003 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggaggccTGAGAATGTGCAAGTTGGCATTTTATACGTAATTTATAACGGTAAGATGTGGACCTTATTTGTAGTATATTGAGATATTTATTGagtatatttttgtttacaaaaccAGAAGACCGTAATATAAGATGCGTATACTCCACAGATGAATAACTAAAGGTGATTGGCTTTTGGGAATCAAGGGGCCTGgcttgaattctttttttttttttgctccactGCGTGCTGGTGTTTATATAAACTCGACCAAATACCACATCATGGCATTTATACCTGTGGTTGACTTTGGTGTCTACAAACTTGGTATCAGTGACACCACTGATGAGAACCTGCACGAGTTATGCAAAGAAATTCGAAAGGCCTTCACCGATGTGGGGTTTGTGTATCTCGAAAATACTGGCATAGATAAGAAAGAGGTGGATCATGTCATGGACATTTCTAAGAAGTTTTTCCTGCTTCCTGAAGAACAGAAAAGACCCTTCGGTAGGGGCAGTTTCACAAATAGTGGCAATCATGGTTGGGTGTCCTCAGAGACAGAACGTTTGAATCCTGGACGTCCAGGTGACTTGAAAGAGGCTTTTAATACTACGTCCTTATGCACAGATATTAAATGGCCCTCCGATGATCTTGAAGGCTTTCGTGACATCCAAGTCGGCTTCTTCCTGCGCTGTAAGGAGCTCTCTCTCCGTGTACTCAGGGTCATGGCTCTCAGTCTAGGCTTGGATTCAGAGGTTTTTCTCAAAGCACACAGCCACATTGGAAGTGATGAGAATGGCAGCACTCTGCGCTCTCTCTATTACCCTCCGGTGAATGCTGGGAGTGTGAAGGAAGGTCAGCTCCGCTGTGGAGAGCACTCAGACTACGGCAGCATCACTCTAGTCTTCCAGAGCCATGAGGCAGGCCTGCAGGTATTAAGTCGCAAAGGGGAGTTTATCTCAGCCCCAAGCATTCCTGGAACAGTTCTGATCAACATTGCAGATCTAATGCAGAGGTGGACCAGTGACGTGTTTGTATCTGCTGTCCATAGAGTTCTACTACCACCTGTGGGCGACTCAAGCACAAGGCAGTCTTTGGTGTTCTTCGTGCAGCCGGATGATGATGCCATCATTACGTGTTGTGATGGCTCAGACAAATATCCTCCAGTGAAATCAGTGGATTATCTCCTGGCAAGATTCGACGACTCTTATGGCAGAAAATAGATCTGTGCTGCTCATTGTGAGCAGATGCTCAGCTGCATTTAGAAATGAACTGTGCATATGGGTTCTTTCATGctgaaaaaagtaaagaatacattttatttttcataagcATGAATGTTTTTGCAATCCTGTATGGAAATTTACTCACCAGAGGGCACTATAACTCAACTATCAGGATGTTTGTATAGAAATTTATATGATCATCTATTGCTTCACTGTTGTGGTAATAACATCTGCTGTTTATCTAATATTCATTGCTATGCTGTTATTTGTCTTGTTTAGTGTCCATGTACTGGACACTGTTAAATTGTCTATTTTCCAGTTTTactaataaatttaaattagaCACTTTTATATCACCATATATTAGACTTGTATAGATTTGGCTAGTCTTACTTAAaaaattttgattttcttttagcAAAATAATTAGGGGTCAGggaattgtaattattttttatgggGCCAATTTGCATTTTAgcctacatttaaaaaaacaatcattaacCAGGCtctctttttaaatatacttgAGAGTTGTATTCGAACATTGTAATACTATTTTAATCGTGTCTGTTGACTTTCTGTCTGGGAAAATagattacagtatattattacaTCAAATAAAGTTTGTTACATGGGAGAATTAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379908 lncRNA upstream 16004 15223871 ~ 15226072 (+) True G320797
TU379693 lncRNA upstream 145744 15091921 ~ 15096332 (+) False LOC113533365
TU379658 lncRNA upstream 175711 15063757 ~ 15066365 (+) False LOC113533366
TU379422 lncRNA upstream 570407 14668721 ~ 14671669 (+) True G320386
TU379931 lncRNA downstream 1512 15249515 ~ 15253554 (+) False fcer1gl
TU379971 lncRNA downstream 54315 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379974 lncRNA downstream 62601 15310604 ~ 15310809 (+) True G320843
TU379980 lncRNA downstream 92563 15340566 ~ 15341207 (+) True G320848
TU380071 lncRNA downstream 213851 15461854 ~ 15463232 (+) True G320935
XM_026925028.2 mRNA upstream 1548 15231547 ~ 15240528 (+) True ncstn
XM_026925902.2 mRNA upstream 50837 15175775 ~ 15191239 (+) True LOC113533638
XM_026925903.2 mRNA upstream 50837 15175776 ~ 15191239 (+) False LOC113533638
XM_034314832.1 mRNA upstream 102224 15118493 ~ 15139852 (+) True LOC113533364
XM_026925482.2 mRNA upstream 140615 15098873 ~ 15101461 (+) False LOC113533365
XM_026925042.2 mRNA downstream 1512 15249515 ~ 15253555 (+) True fcer1gl
XM_026925029.2 mRNA downstream 7187 15255190 ~ 15268619 (+) True nectin4b
XM_034314546.1 mRNA downstream 7187 15255190 ~ 15267816 (+) False nectin4b
XM_026925027.2 mRNA downstream 33238 15281241 ~ 15292624 (+) True si:dkeyp-68b7.12
XM_026925821.2 mRNA downstream 44772 15292775 ~ 15297536 (+) True si:dkeyp-68b7.5
TU379509 other upstream 413305 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1346411 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1346411 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2469209 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3669179 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 621013 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 681949 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 852530 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 864033 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 883332 16131335 ~ 16132364 (+) True G321257

Expression Profile