Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026925045.2 |
| length | 975 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | ap1s3b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047615.1 |
| NCBI id | CM018561.1 |
| chromosome length | 21248730 |
| location | 11238239 ~ 11253682 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| GO:0008565 | obsolete protein transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU377003 | lncRNA | upstream | 69105 | 11106795 ~ 11169139 (+) | True | G318331 |
| TU377005 | lncRNA | upstream | 118417 | 11112953 ~ 11119827 (+) | True | G318332 |
| TU376936 | lncRNA | upstream | 229098 | 11007948 ~ 11009146 (+) | True | G318273 |
| TU376903 | lncRNA | upstream | 250668 | 10984227 ~ 10987576 (+) | False | G318248 |
| TU376904 | lncRNA | upstream | 275874 | 10959921 ~ 10962370 (+) | True | G318248 |
| TU377136 | lncRNA | downstream | 149582 | 11403264 ~ 11404056 (+) | True | G318426 |
| TU377440 | lncRNA | downstream | 520261 | 11773943 ~ 11774148 (+) | True | G318647 |
| TU377452 | lncRNA | downstream | 545276 | 11798958 ~ 11799181 (+) | True | G318658 |
| XR_004580299.1 | lncRNA | downstream | 579626 | 11833308 ~ 11846411 (+) | True | LOC117599957 |
| TU377478 | lncRNA | downstream | 617085 | 11870767 ~ 11870966 (+) | True | G318683 |
| XM_026925676.2 | mRNA | upstream | 16381 | 11187798 ~ 11221863 (+) | True | LOC113533503 |
| XM_026925891.2 | mRNA | upstream | 340493 | 10880241 ~ 10897751 (+) | True | map6d1 |
| XM_026925863.2 | mRNA | upstream | 359588 | 10861959 ~ 10878656 (+) | True | acsm3 |
| XM_026925735.2 | mRNA | upstream | 377948 | 10838755 ~ 10860296 (+) | True | ncapd2 |
| XM_034314779.1 | mRNA | upstream | 504156 | 10730346 ~ 10734088 (+) | True | camk2n1a |
| XM_034314685.1 | mRNA | downstream | 54339 | 11308021 ~ 11315878 (+) | True | LOC113533219 |
| XM_026925192.2 | mRNA | downstream | 70445 | 11324127 ~ 11342139 (+) | True | LOC113533220 |
| XM_026925193.2 | mRNA | downstream | 70445 | 11324127 ~ 11338817 (+) | False | LOC113533220 |
| XM_034314684.1 | mRNA | downstream | 103888 | 11357570 ~ 11374709 (+) | True | LOC117599968 |
| XM_034314678.1 | mRNA | downstream | 146202 | 11399884 ~ 11461068 (+) | True | per2 |
| TU376560 | other | upstream | 669348 | 10563835 ~ 10568896 (+) | False | eif4e2 |
| XR_004580322.1 | other | upstream | 675250 | 10536431 ~ 10562994 (+) | False | capn10 |
| XR_004580323.1 | other | upstream | 675630 | 10536431 ~ 10562614 (+) | False | capn10 |
| trnar-ucu_12 | other | upstream | 1050420 | 10187751 ~ 10187824 (+) | True | trnar-ucu_12 |
| TU376185 | other | upstream | 1260343 | 9959329 ~ 9977901 (+) | False | pip4p1a |
| XR_004580315.1 | other | downstream | 146202 | 11399884 ~ 11461068 (+) | False | per2 |
| TU377149 | other | downstream | 213617 | 11467299 ~ 11469499 (+) | True | G318439 |
| trnap-agg_14 | other | downstream | 294426 | 11548108 ~ 11548179 (+) | True | trnap-agg_14 |
| trnai-aau_17 | other | downstream | 295433 | 11549115 ~ 11549188 (+) | True | trnai-aau_17 |
| trnag-ccc_6 | other | downstream | 319145 | 11572827 ~ 11572897 (+) | True | trnag-ccc_6 |
