RNA id: XM_034314553.1


Basic Information

Item Value
RNA id XM_034314553.1
length 3626
RNA type mRNA
GC content 0.45
exon number 13
gene id atcayb
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16147863 ~ 16160217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGACAACACAGATAAGACAgctggagtgagagagaggggacgGAGAGGAGGGTGTGAGGGAGGAGCTGGAGAGCATGAGCGCAGTAAGGAAGAGGCGGGTAGAAGAGGGAGGAGTTTGCTGTTAagaagtaaaagagagagagagtgatgctGTTGCTAGGGAACAGTGAAAATGAGCCATCCATCTTTGGGagcaaaaacacagacagggTGCTGTTCTCCTAGCCTGGGAAAATAAACCCTGTGTTATTACAAGGTGATATTTCCTCGTTATGTAGTGAGGGAGAAAatcagagagggaggagagaaagcAGAGGGCCCAGGTGAGATTACGTAATCATCACATCAGCGCTTGGTGGTTGCCGGTGCAGAGGGATTGTATCTGTAGCCTGACAAGTTAACCACAATCCCCTGTGGAGATGAAGCGGTTGGACACAGAGCCATGCTGCAGGAGGCACAGGAGGCAAAGAACATCTGGATTCACCTCTTCTGGATGAAGACAGCAGTGTGTGGTTGCTGAACAGAGGAGAGCATCAGGAAGCAGACAGGATAGACACAGCACTCATCTTCTCACCCAGATACACACCCACCTGAAATCTAGCCGTGCCAGTCTGTCTGTCCAgtgcaggaaagagagagaaggaaaaaggaagagagataGCGCATGTGACTTCCTCATCCTACACAAGTGAAGCGTTATGGATTTAAGCATGGCAAAAAAACAAGTCCAGGCCTGAGCGAgggaactcacacacacacgcacacacacacacccacacacacacacatacacacaaggaGCAGCAGGAGAACAGAGAACACACAGGGAAAGGCGTATTTCTGGTTGTGACCTTCCTGCACCTCTGGACAGGAGGATGGGTACGACAGAAGCCACTCTGCGCATGGAAAACTTGGAGGTGAAGGATGAGTGGCAGGATGAAGATTTCCCACGGCCTCTGCCGGAGGATGGAGACCTTGATGGCCTTACTGACAATCGCACATCTCCCCCTGGCTCTCTGCACGGAGGTCACGGAGGCTCAGCAGCTCAGAGTAAGCGAAGGACACTCGTTGCCCCAGACATAAATCTGTCCTTGGACCGGAGCGAAGGGTCCCTCCTGTCCGACGACATCCTGGACACTCCAGACGATCTGGACATTAATGTAGAAGACATGGACACACCAGACGAAACAGACTCTTTAGAGTTCATCACCAGCGGCAATGAGTTGGAGTGGGAAGATGATGCCCTTGTGGCGCGAGCTAAAGTGGGTCCAGGTGATGGTTCGGGTCAGGGGGCTGAGGAGGGAGATGGGACTGCTCGCCTCTGGAGGACTGTGATCATTGGAGACCAGGAGCACCGTATAGACATGCAGGTCATCAGACCATACCTGCGCGTGGTCACTCACGGAGGTTATTATGGAGAAGGTCTGAATGCCATCATTGTGTTTGCGGCCTGCTACCTCCCGGACAGCGGCTGTGCCGACTACCATTACATCATGGAGAACCTCTTCCTATATGTGATCAGCAGTTTGGAGTTACTCGTAGCTGAGGACTATATGATCATATACCTGAATGGAGCAACTCCACGCAGGAGGATGCCTGGCATCAGCTGGCTCAAGAGATGCTACCAGATGATTGACAGAAGGTTAAGGAAGAATCTCAAATGTCTGATTATTGCACACCCATCCTGGTTTATTCGGACTGTTCTGGCCATCTCACGCCCTTTCATTAGTGTGAAGTTCCTGGATAAGGTTCGCTATGTGCAGAGTCTGGAGGAGTTGGCTCAAATCGTCCCTATGGAGCATGTGCAGATCCCTGAGTGTGTGCTGCAATATGACGAGGAGCGTCCCAAGGCCCAGACAGAAAGGCTTGTGGaagaacagagacagagtgacagatcAGTCCCAGAAAGGCCCACATCGGTGGCTGCGGAGGCTTGTCCATGACTTGAGTTAATCTTTTTAGCAAAGGACAAGGAGCTGTGTGAGCTTTCTTCCTCTAACACCAACATCTGCATCTGTTTTCTACAATCCAGCAATCCATCATCATCCTTCTCTCTGAAAAGGATCTGTTAAGAGACTTTATATATGCAATTATCTGCCACTTTACTCTACACCtgctcatgcaattatccagttaTCAGCCAACAATGTGGCAGAAGCACTgatctgctgatctcctgaaggttgaagattggaaaatgaCCAGGCGATTATCCAGTTTAgatgaacctgtgcccactgtaacatccaattcctgttcttggctgacaggagtggggTCTTTTGCTGTTTTAGCCCAATCACctcaatgtttgatgtgttgtgcattctgagatgcttttctgctcgacACGGCTGTATATAGTGGTTGtcatagccttcctgttagctcgaaccagtctgatcatttgcttctgacctttctcatcagcaaggtgtttctcACAGTAGAACTGGCACgcactgggtgtttttttttaactgccaTTCTGTCTAGAGTTCAATCAGTTGTGCATGAAATCCCTggagctcagcagtttctgacatactcaaaccagcccgtctggcaccaacaacaacGCCACGgtcagtcactgagatcacattttaccCCATTCTGAgatttgatttgaacattaaactgaagctcttgccttgtatctgcatgattttattgatTGGCTTATCGGATGATTGcagagcaggtgtacaggtattcctattaaatTGGGCAGTAAGCATTTCTACTTTAACCTGGGGCATGACTCTTAATGTGAACAAAAgacacatttctgaaaataCAGTGGACTATATGTACTGCAACACATGAAAAAACTCAAGCAACttatttaaaaagcacaaaaaagtgACTTTTTACTAGATATCAACCCAGTCTCATCTTCAACCAGAAAGCATGGGGAACCTGTTTTAATGTTGCTAAGTGTAGGACCGCAGTGTATAAGTTATGTGGAGAAGCTCAGCATGGACAGCCATGGTTTTGTGTTGCACTGGTACAGTTGCACTAATTACTCTAACGTTCCATATTtaataacatacacacagtcagtgGGTTATTATATTTTGTGCAGTTTATCATCATTTCAGACATCATTCACACCAGCAGAATTTTGCTACTGTAGTAGAAGGCATAAATGAAATCCAGCATCCATGTATAATATTCTGTATACTGTAAAATAGTGTATGcgtctgtttttttccccaatgtaCAAGTTTTCCCTTTATAGCAAAGgataacatttcaaaaataaCTCACTACAGGCTTTTATGCTTTAAAGTAACGCATTCCTAAAAACAGGTCAtgggtgtaataataaaaataaatgcaatagtTCTCAATAGTGAATGTTAGCTTACACATATCTCAATAATATTCATTTCCTACCATCATGTTATTACAGGATTTCTAAATGTTTATGACGTAACTACAGGATTTCTAAAAATTTCAAGGAGGTAACTGCAGGATTTCTAAAATTTCCATGATATATCTACAGGATTTCTAATTCATTCCACTGATTCAGGAgggatattttaaaatactgtagCCATGTTATTGTACATACTGATCATACTGTACAGTGCATTGTAAGTAAAACATTTGTATCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380540 lncRNA downstream 48625 16098868 ~ 16099238 (-) True G321349
TU380538 lncRNA downstream 98220 16049442 ~ 16049643 (-) True G321347
TU380518 lncRNA downstream 106122 16040881 ~ 16041741 (-) True G321330
XR_004576914.1 lncRNA downstream 320519 15811353 ~ 15827344 (-) True LOC117595737
XR_003403424.2 lncRNA downstream 436087 15687082 ~ 15711776 (-) True LOC113533563
TU380546 lncRNA upstream 27760 16187976 ~ 16190570 (-) False G321354
TU380548 lncRNA upstream 27760 16187976 ~ 16223314 (-) True G321354
TU380547 lncRNA upstream 32136 16192352 ~ 16223314 (-) False G321354
TU380672 lncRNA upstream 214294 16374510 ~ 16375343 (-) True G321465
TU380675 lncRNA upstream 233992 16394208 ~ 16456123 (-) True G321468
XM_026925765.2 mRNA downstream 4500 16140764 ~ 16143363 (-) True nmrk2
XM_026925766.1 mRNA downstream 4771 16140764 ~ 16143092 (-) False nmrk2
XM_034314864.1 mRNA downstream 15401 16131569 ~ 16132462 (-) True LOC117599986
XM_026925155.2 mRNA downstream 16062 16128701 ~ 16131801 (-) True LOC113533206
XM_026925366.2 mRNA downstream 53009 16090524 ~ 16094854 (-) True pgpep1
XM_026925892.2 mRNA upstream 67455 16227671 ~ 16230299 (-) True klf2b
XM_026925546.2 mRNA upstream 148342 16308558 ~ 16326957 (-) True ap1m1
XM_034297792.1 mRNA upstream 175787 16336003 ~ 16342837 (-) True LOC113533484
XM_026925803.2 mRNA upstream 225211 16385427 ~ 16392280 (-) True cib3
XM_026925539.2 mRNA upstream 309883 16470099 ~ 16473688 (-) False cirbpa
TU380217 other downstream 423507 15687258 ~ 15724356 (-) False LOC113533563
TU380215 other downstream 430368 15687258 ~ 15717495 (-) False LOC113533563
TU379938 other downstream 918607 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 1402376 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 4599424 11548368 ~ 11548439 (-) True trnaw-cca_17
TU380669 other upstream 197358 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 459417 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 813472 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 920805 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 1339849 17500065 ~ 17500832 (-) True G322080

Expression Profile