RNA id: XM_034314569.1


Basic Information

Item Value
RNA id XM_034314569.1
length 3400
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC113533145
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9788997 ~ 9827888 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCGTGTCAGGAATAACCCTAGTTGCATCTCGATTGCTTTATGCCAAATCCACGAACACTTAATTACAGTCAACTTGATGCCAATCAAAAGAAATAAGTAGAGAAGCGGCTTCTTACCTGCACAGTGAGAAAGGAAATAGTTTGTCTAGTGGATGCAAACACAGTGCAAATTGGAAAAGACAACACAGACGATAAAGAGGATGCTAAGGAACGTCCTTCGGTGCTTTGGGAGAAACAATTCTAGCAGACCATATTTGTAGACATGAGTGATATTGATGACAGCCTCCATTTCAGTCACCTACAGCGCTCTTTCACCATGCATGTTTCACACGGCTTCGCTGCATCCAGTGGTCTGTCTGGCTCATTCAAGGATGTGGAAGACTACTCTAAAAGTCCCGTCTCCATCATTAGCAAACATAGACATTATGGCAAAATAAGAGATGTGAAAGGAAATGAGATGGAAGTTTCAGACTCACAGCCTGACACACTACCAGAGCAGAAGAGGTGGACACATGAGGATGACAATACCAGTGATGAAGACCAGGAGGAGCTCCCATATGATGGTGAGCTTTACCATCATGTCACACATTGCAGCAACAGCCTCAGACAGAACTCAGAAGAACCTTTCAACCTGATCAAGAAGTATAACCACAGTCCTGGTGCTTTCAACACTGTCAGAAGGGATGCCAAGTTGGCAGGTGGTGGTGTCACCAACACCAGTGGCCCTGTATTTGGGCAAAAACCTCACCAAACTTCTATCCCAAGCATCCTCCTCAGGCATTTCTCTTATGATGAGCTATTCAACTGCAGCAGACTCATTGAGACAGAGACTATGCCTGAAGTCTCACTGATGGATAGCATAAATCAAACAACCCACCCAGCTTCACCCAACCCACACACCACCACAGGAAAACACAGCATAAAGATCAAAACCAGTCTTTTGAGGTCCAACAGAGGTGACAGCTACACTGCCTTAGGGGTAACAGACTCAAAGACAGAAtctgcagaaacagaaacacatgaCAATAATAATGCTTACAAAGTGTCAAATCAGTCAGACTCCTCAGAAAAATCCAAATTATACTCCAGTAGTAATAGATACTCCAGTCCAGGTGCTGTTTTAGTGGTAACTGAAGatgtgaaagaagaaaaagagaataatGTGAAACAAAGCTGCAGTTGCAGCCCTCCTAACCTGCACAAATTAGACAGCCAGACTGCTAAATGTTCCTTGGGAAGGACATGGTCCTGCAATGAACTAAAATATGGACAGGGCCAGGTGCACTACCCTCTTCCTGACTTCTCCAAAGTGGCTCCCAAAGTCAAGTTCCCCAAAAGTAATGGAGTTGCCAAACCTGGCTGTAACTCAGCTATGACCAGAGCTCAGAAAACACCAAGCATCCTGAGTAAATTCCCTTCCTCCTGTAAAGCTGATGTCATCAGTAGGGTTTTGGAGGACTCTGACTGGCTGATTGAGAAGCCAAAAATGTTCAAAGATGACATGACACAGTACTCTGGTACTCAGGATTTACAGACCAAAACCTTAAGTGAACCAATATTCTCAATATTTTGGGGCAAAAAAGCAGAAGACATCCAACACACAAAAGACAATATCAGAGCTGGGCCACACACTTTCCCGTCAACTAAAGCAGGGTTGGTTGAGGAGAAGAAAGACAGGATCTGGAGCTCTCTCTCTGAACAGAAGAGTCTAACTGAGGGCCACAGGCTCACCATTGAGCTCAAAGACATTATCAACCAATTTACGATGCAGgtGGAGGAATTCAAAATATGCATTAACAACATGTCAATGACTGTTGAAGAACAGCAAATGGTCTTTAAGAGAATGATGGAGGTTCAGGATCAGCTGGAACGGAACTACATGAGTAAGAAAGAGGAGCACAGAGCATTGGAGATGCAGAATTATATGGGTCTCAAATTGAATACAGGGGAGTTTGACCCtgacagGCTGGTGGAAGGGGAGATATTTCAGCTAGGCATGCACCTGGAGGACCTAAaggaacagatagacagaaatgCTTACTGTATGCTCTCTCCTTTGCCCTCATCCACCACTTCCACTGCCCTACTGCATGGAGAGTTTATACCATCTTCCTCACTCCAGCCAGCACTGCATAAGGAATCAGTCTTCAGTCACTCCAGTAAGAGCAGCATAATGGATAAGGAAGAAGAAAGTTATAAAGACAGTTTTGAAGTGCCGAGCACTGTAGATTCACCCCCCAGCTGCCCCAGAGAGAACAGATTCAGGTTGTGCATCTACAATCAGATGTCTTGCATTACGAGGGAGGATGAGAAGGGTAGTGTAAGCATGTCAGAGGAGGAAGATAACCACAAGGACTTACAGGCAAAACTAAGTGACTCACTGTCACCACAACACCAGAGGACACCTAGCAGCAGTGATGCTATTCATGCAATGCAGTACGAGGTATCCTGCCTGAGGACGGTGCTAGAAGAGAGTCTGGGTCCCCTGCCTTACTGCTGCACAAAAATGGCACCTCTGAGGAATATGAGCACACGTGAAAAAAGACTCAGAGCCCAGCCTCATCACCAACATAAGTACCAACAATTTTCCAGAAGATGCCTTGATACAGAATGTTATACAACAGAAGACTGGGTCTCCTCTGATACTGAGCACAGTAAGAGAAAAGGTACAGACTGTGGTACATCTGATGACAATGAAGTGCCAGATGTCTTTATTCTCACTCGCAGAAGCAGACATGCTCACTCCAAAAGTCCCACCAACAGAATGTCAAATGACTTAAACTACTTTTTCCCAGTCTCATTAGAAAATGTGTCTCTGGATACATATCACTCCAGACAAGGCAACAATTATCTGAGAGCAAGTGTTGCAACAACCATTACTGGATCAAATACTCTTGGCAATAATGCTAGATTTGGACTACCCAGTCATAgcagaaaaaacagaaacactggaTGTGTGAAACCCTCCTACAGTCTGCCTTCTGGTTTCAAGGTGCACGATCAGCAGTCAGAACCAGGTGTGACCAGCATGAGATGCTCTATCCAGTCACACTCAGCACTTCTGCCAAGTAACATTTACTTCTACAAGGCCTCAACACTGCCCACCTGTCCTCACAGGACAGGAGATGGGGTGCATAGAGTCAAGGAGGAGGCTTTAACCTGGACTATCGATAAAGCTCTGGATGCAGCTTTGCTGATGAAGCAGATTACTGACCACATGGCTAAAACTCTCTCCTCAGATCTGGCCAAGGCTCAGCTCTACAGGAAATTACATCACAGTGAACGGGAAACGGCTTAACAATTGGTCTCGTCACACTCATTCCAAGCCACTCTTTTACATAGAGGTCCATGAAAACTCTCATTTGTGATGTGGTTATATGTAGAAAGTAGATTTTTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580302.1 lncRNA upstream 77097 9705920 ~ 9711900 (+) True LOC117599959
TU376022 lncRNA upstream 83316 9705413 ~ 9705681 (+) True G317491
TU375904 lncRNA upstream 287157 9501292 ~ 9501840 (+) True G317401
TU375903 lncRNA upstream 288137 9500657 ~ 9500860 (+) True G317400
TU375897 lncRNA upstream 323028 9444709 ~ 9465969 (+) True G317395
TU376155 lncRNA downstream 47108 9874996 ~ 9875820 (+) True G317618
TU376158 lncRNA downstream 51027 9878915 ~ 9879756 (+) True G317621
TU376171 lncRNA downstream 112081 9939969 ~ 9940237 (+) True G317633
TU376260 lncRNA downstream 277878 10105766 ~ 10106921 (+) True G317703
TU376326 lncRNA downstream 329389 10157277 ~ 10157530 (+) True G317754
XM_034314596.1 mRNA upstream 146353 9532677 ~ 9642644 (+) False LOC113533645
XM_026925914.2 mRNA upstream 146353 9532679 ~ 9642644 (+) True LOC113533645
XM_026941149.2 mRNA upstream 569896 9168411 ~ 9219101 (+) True LOC113543105
XM_034314910.1 mRNA upstream 625803 9033569 ~ 9163194 (+) False LOC113543049
XM_034297745.1 mRNA downstream 1490 9829378 ~ 9861148 (+) False fndc7a
XM_034297744.1 mRNA downstream 1492 9829380 ~ 9861147 (+) True fndc7a
XM_034297746.1 mRNA downstream 1494 9829382 ~ 9861146 (+) False fndc7a
XM_026925101.2 mRNA downstream 115865 9943753 ~ 9952320 (+) True dnaaf6
XM_026925733.2 mRNA downstream 131105 9958993 ~ 9977916 (+) True pip4p1a
TU375892 other upstream 373833 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 976177 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1519799 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1524936 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 2093078 7695534 ~ 7695919 (+) True G316413
TU376185 other downstream 131441 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 359863 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 708543 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 708543 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 735947 10563835 ~ 10568896 (+) False eif4e2

Expression Profile