RNA id: XM_034314616.1


Basic Information

Item Value
RNA id XM_034314616.1
length 9271
RNA type mRNA
GC content 0.51
exon number 49
gene id LOC113533154
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13306777 ~ 13377178 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGAGATAACGGTGCTCAGCATCCTCAcgttcatctctctctgtctctctctctctctctcgactcAGACACAATGCAGTGATGGAGCACTTCGCTTAGAACGTTgcggcatttaaaaaaaagaaaaaagcacgAATCCTTTTTGTTCTTCTGTGGATCTGAAGGAAGGGAATCAAAAATGTAGCAGAGAGGGACACTCAGGGCTGTGGGTTTGCTCAGAATGGAATGGGCTGATGAATCAGGGATACCGAGCTGGCCTGCAAGCGAGAGGGAATTCATTGTCGACCAACAGGGCAATGTGTGCAGGAACACGGGTCACATGACAGattATCTGAGTGATGACACAGAGAAAGCACCACCGCTTCAAGCTCACACGCTGAGAGAATTTGAACAGCACCTCACTGACCTGAAGAAGGAGAACTTCAGCCTCAAGCTGCGCATCTACTTCCTGGAAGAGAGGATCCAGCAGAAGTATGAGAACAACAGTGATGATGTCTACCGAACGAACATTGAGCTGAAGGTGGAGGTGGAGAGCTTGAAGCAGGAGTTACAGGAGAAACAGCAGCTTCTTGACAAAGCTCTGACAACAGCGGAGAGCCTGACCAATAACAATGAAGCAGAGCTTCAGCGTCGCTGTGAGGCGAGACAGCAGGAGATCGACCACATGCAACAGGTCCTGCAGACCAAGATACAGCTCCTGCAGGAGGAGGCCCAGTTAGCACGGAGCGAGGCTGAACGCATGGCCAGTCTCGCAGAGTCCTGCTCCCAGCATCCCCCTGTCACCATGGAACCCATCACCAAGGAGATGTCTGTTGCTAAGAGCTCCCAACCTCCCAACCTGCTGCCTGACAACAGAGACAGCAAAAGGATTGAGGAGCTCACTGTGGCAGTGCGCTGTAAGGAGATGTTGATACGGGAGTTAACGGAGGAGAGGAGCTCTCTGAGACAGAGAGTCACAGAGATGGAGGAACAGCTCCAAGAACTCTCTACCTCCCTACTGCAAAAAGAGAGGGATGCAGagTTTTATCAGGAAGAGCTGGGTCGTGAGAGGCTGCGTGTCCAACAGGAAATGCAGTCTCTGATTGAAGAGCAGCAGTCTCAGCTGAACCAGTATGAATCTGCAGCAGgccagtgtgtgagtgaactGCAGAAGGCTCAGCTACAGGTTCAGTCCCTCCAAAATAAGATCCAGGATAGCGAAACCAGCAACAAGAAGCTTCAGGAAAAGCTGAGTGAAATGGAGACTGAGCTGCGTTCTATCAGACAGGCAGCTCAGAATCAGGAGAGGACAATCCAGAGCCTCACTGAAAGTCTTAATACTAAGGAGACAGAGacacaGGAGTTATATCAGGTTATAGAAGGACAGAATACCACCCTGTGTAAGCTCAGAGAAATGGCCCATCGCAGTCAGCTCCAACATTCACAGgTTGTAGAAGGGGTTGACCTGCAGGTTGAGGTGGTGGCACTACAAAGCTCTCTCTTCTCCTGCCAGCTGGAGCTGGAGGCCAGTCAGCGAGCACAGAGACAGAGCCAGAGGGTGGCAGAAGACCTGGCACACTCCCGTGACCGCCTGCACGGTGACCTAGAGGCGGCGCTGCAGCACAGGGAGACCACCGAAAAGTACAACCAGgATTTGCGCAGCACAGTCCAGCAGTTGCGTTCAGAGCTACAGGTGAAGGAAGCTCAGCTGAAGGAGAGCGAGGCCGATaaacactctgagattttagcCCAAGACAAAACCATCTCAGAGCTGCAGTTTTCTCtaagggagaaggagagaattGTGCAGgagTACTCAGAGCTGCTGGACCAGCCTGCTGAGACTGGCCGACCCCGAGACGCCCTGCTGGACAAACTAAAGAGTCGCATTCGTGACCGGGACAAAGCTCTGGAGCGCGCTATAGATGAGAAGTTCCGCTGCTTGGAGGAGAAGGAGACTGAGGTGCGCAAGCTACAATTAGTGCtccgagagaaagagagagatctcGAGAGACTGCGTTGTATTTTGACCAACAATGAGGAGACAATCACGagTCTGGATGGTCTGATGCGCAGTAAGGAGCTGGAGTTGGAACAGACTCAGGAAGCGTGTCGGAAGCTGCAGTGGCTCAAACAGCAGTGCGATGAGAAACACACAGTCGCTCTGCGTGAGAGAGACAACATCATCGCACAgctgcacactacactacacacacgcagCAAGGAGACAGAGGACCTGACAGCGGCGCTGTTGGCTAAGCTCTCCCCCAGCCCTAATGAGATAGTGGAGGAGCTGAAGTCACGTCTGGCACTGAAAGAGCGGCTCTTTCAGGAGATGCTGTCTGAGCGCAGCAGGCAGACTCAGGAGCACCACACTCTGATCCAAGACCTGCTCAATACAATCAGCTCCAGAGACCATTACATCAAGGAGAGTGGTGAGAGGTTGAGGCAGGTGATAACGGAGCGGACCGGGCAGCTACAGGAGATGCGCAGGCAGCTCTCATCACGTGAACAGGAGCTCAGTGAAGTGACacgggagagggagagggagagagaaagaggagctCCACTGGCCATGGAGTTGGAGAGACTTCAGAGtatactgagagagaaagaaagcctTATACAGGATCTGATGCAGAGTCAGGAAGAGGCACAGGCAACCTCCAGATCATCAGCAACAACACTGAGATCAGGGGATAGCAGCTCAGAGCTGGAGATGCAGGCTGTTAAAGAGGAGCTTCAGATCGCCCTgaggaaacacagagagacagagCGGGAGCTTTTGGAGTTAAGATCTGCTTTGACCAAAAAGCCTGAAAATCGGATTGGCACTGACCCCCAGAGTGCGCTGGAGCAGTTGGTATCAGAGTACCAGCAGCTGAACCAGGCTCTGAGAGCCGAGAAGAAGCTCTACCAAAACCTGAACCACATGCACTCCACAGGAGACAGTGTGGAGAAAACTCGGGTGCTGCACATGGAGCTGGACACGGTTCAGGCGCTGCGAGGACAGCTGGAAGAGGTCCTGAGCAGGACCCGAGACACAGCTCTGGCACTGGACAGGGCAGCTAAGGCCCACGCTGACTATGGAGAGTTCAGcacagatgaggatgaggacgagatcgatgatgatgaagatgaaggcaGTAGCAGTGAAGAATTCACCGACAGTATAGAAGAAGATGTGAAACTGTCCGCTGAGAGTCTGGCTAGCACAGAGAATGCTGGGGTGTCTGGAGGGCCAGTGAGCAGGAGGATATCCCAGGAGGCCATGAGGGGAGGATGGCAGAATAAGGTGGagcagaagaagagagaagagagagagacaggagaaggGAAAAGCCAGCTCAGCCAGGCTGGCTGTGCCTCGCTGTCTCAGGACAGGTGTACACTACCAAACCTGCAAGAGGAAAACAACAAGCTGGAACTGAGcggcagtggatctggatctggaCAGGATTCTGGATCTGGATGTGGACTGGGAACAGAAAGTAATGTAACTGTGAAGTGCAGAAGGTGGGAGCAAAGTGAAACAGACAGGCTGAACCCCCATGACCAGCAACGAACCCCCATGACCAGCagcgaggaagaggaggatgaatatgatgaagaagagggagaggaggaggaggagggcaTGCGGGCCCCTCGAGGAAAGCGTGGCCTCCCGAAAGTGACTCTGAGAGAGGGAGCGGGGAAGAGGAAGTGTAACAGACCTCACTCTCTAGACCTCGGAGTGCTGCTAACTCACAAAGCTACGGGTGAATCCAGAGCACAGgaCTTagagggagaaaatggaggTTCTGCAGGGTTCTGGCAGCATGTCGAGGCGGGACTACGTGAGCAAGCCGAGCGTCTCCGTAGCGACCTGGCCCTGAGCCGCCAGGAAAGCAGAGAGCTCCAAGAGCGACTGATGGTGTCTGAGGCCACTGTACACGCACAGGCTGACCAGCTCAAGGAGTACAGAGAACTACTGaCGGAGAGTGCAGTGCAGCAGGACAGTAAGCAGGTGCAGGTGGATCTGCAGGATCTGGGCTATGAGACCAGCGGCCGCAGTGAGAATGAGGCTGAGAGAGAAGACACCAGTAGTCCTGAGTTTGATGATGTGGAGCTGTGCAACTCTCTCTCCCGGCCGTCGTATGGCAGTGTTGGTAATTCGTGGCATCAGCATGGCAACAGCTCCCAGCCGGATGACATGTTGGTGCAGGACCTGCGTGCACAGCTCTCCCGCTGTCACAAAGTGATCCGTGGACTGCAGATCCGCGTGCGTTCACTCTCAGCTACCTCCGACTACGCTTCCAGCCTTGAACGAGCACCACGCAAGGTGAACTGGGCCTTCCAAGCATCTCCTGCCCACAGTGGTTTGGAGGATGATGAGGGCTGGCACTCGGATGGGCCAGCCCTTGGACCACTGAAGTCCAACAAGGAGCTGCAAGAGCTGATGTCACGTGTGGCATCACTGGAGAGCCAAATCCACAGCAGCAAactggaagaaaaaagagcGACAGAGGAGGGGAAGAATGCCACATGGCCTGGAAAATACAACACGCTGATCCAGGCTCAGGCTCGGGAGTTGTCGCACTTGCGACAAAGGATGCGTGAGGGACGAGGAATTTGCCACATCCTCACGCAGCACCTGGGCGACACCACCAAGGCGTTTGAAGAGCTGCTCCGGGCCAACGATATCGATTACTACATGGGCCAGAGCTTCCGAGAACAGCTTTCCCAGAGTTCCTCACTCACACAGAGGATCAGCATTAAGCTCAGTGGAcGAGATCGGTCAGAAGTGCAGGATGACAAAATGGGCCACGAGCTATTAGCTTTAAGgttgagTAAGGAGCTCCAACAAAAGGACAAGATAATTGAGTCTCTCCACACAAAGCTGCAGCAACGCCCTGACACACCCTCCAGTAGCCACGCCCCCTCCGAGACAACAGACCAATCCGACCGCACTTCCTTTGTGTCAGATGAAAGGGCCTCGATAAATGAGGATCTGgaactgtgttctgatgtggatgccatcAGCGAATACGCTCAGCAGGAACCAGCTCCTAGATCAAATGATACAGACCGCCCCTCCTTCCTCCCTGTCCCTCCCTCTAGTCAATCCCGTATCACCTCCTACAGGCCAAAAGAGAATAAGACAGGTAGGCAGGGTGTGTATTCTGCTCCCTTGTATGGTTCTTTGCCATTGGCTCAGACCCAACCCTGGTCCAACTTCTCAAATAACTTAACCTCTGACCCATTGCCCTTTTTTGGGCCACTGACACCAGAACAGCACCAGCAAGGTCTGCGCAGACCACCAGTCCGAAGTTTTAGTTTACCACATTCACTGAGCAGCTATCCACTGATGGGCTCTGCACTACCTGATCCCTCACATTACACCCAGCTATCTCATCATTCCCTTCACCAGCCTCAGAAATCAGATAGCAGCCTGGTAGGGAGCAATGCACCATGGGACATGGACAGCATGGTTCAGCCAATCATAGGCTTCACTGGAGCACCTGGTTTCCAGTCAGCGCACAGCCATTCGGGTGTGGACCTGATTGAGGAGCATCTGTGTGAGATCCGTACTCTGCGCCAACGTCTGGAGGACTCCATCAGGACCAACGAGAGGCTGAGACAGCAGCTGGAGACTCGTCTGGCCAACGCCACCAGAGATGGAGCAGCACCCACAAACATCTACATCCAAGGCCTGGATACTGTCACTCAGCTGTCCAATGAGATCCGAGTGCTAAAGGAAGAGAATCTGAGTCTCCAGTCCCGACTGCAAGCGAGCAGGGACAATAGTGAGGAGGTGGAGCAGTTGCGGGAGGCGGTGCTGTCTGGGCGGGCGCGGCTGAAACAGGCGGAGTTAGAGGCGGAGCAGTGGAAGGAGGAGCTGAGGAGGCTtcagacacacagctgtgaACAGAGTCAGCAGATTCAGCAGCTACGGCAGGAGAGGCAGAGCAACCAGGAGCACAATAACAGgttgcAGCATGAGGTGAGTCTGCTCCAGCAGCAGCTCTCCGAAAGCAGGCAGCTGCTGCACTCCCTGCAGTGTGAGCTCCAGCTATATGACCGAGTGTGTACAGGGAGCAAGGGCACCCCCGCAGGTTATCTCTCTGAGCTGCCGTACTCCTCTGCTCCAGCTGTGGGAGAACTCAACCAGTTGCTGGTGGAGGTCCGGGCTCTACGGGCCCAGCTGGAGCGGAGTGTCCAGGAGAACTGCGCTCTGAGGATACAGCTGCAGAAACAGCTGGAGCAACAGCTGTCCTCAGCCGGTCTGGAGCCGAGACCTTCATCCCTCTTGCCAGCCAGCCCGCTGCGGGACGCCCTCTACAGGAAGCAGCTGCTCCACGacCCGTCTCCTTCTCCTCCAGTGAGGGACGTTGGTCCGTTCCCTTCCGGTCCACCATGTTCTCCTTATTCAGAGCTTGAGGAGAGCTCACTCACAGCTAACGACTCTCTGGAGCCTCATGCAGATTTGGAGGGTGATGCCCCCGATGGTTCATTCGCTAACCGGAACGGACGCCACGCCATCGGGCATGTGGATGACTTCAGCGCTCTGCAGCAGCAGGTTATGGAGGGCAGAGGGCTGGTGCAGAGGATGGAGGCCATGCTGAATACCTGCCTTAACACTGCACTAATGGAGGTCAATACCGGAAAGGCTCTGGATTATGCCAGTGTGAAGACTCTATTAGCCAACACCAAGACTCTGAGGCAGATTCTGGAGGAAGCCGTGTCCCTGCTCAAGATGTTCTGGAGAGCGGCACTTCCCAGCAGTGACAGCCCCGCCCAGTATCTCCAGAAAgaGCAGTCGATGAAAGAGGAGATCCAGTCTCTGCGTATGAGGATAGCGGAGCAGGAAGAGGTTCTGCAGAACACCATACAGAGACTGAGGAGCACCAGCCGCACTAAAGAGAGCATGGAGACCTTCATCGTCAACCAGCTGTCTAGGACTCGAGATGTCCTAAAAAAAGCCAGAGCCAATCTAGAGAAGAACGAGCTCAGGATTTCTTCTTTaagctcctcctcttcctccctttACCATGgTAAAGTCCTCAAAGGTGCCTATCCAGGGTCTTCTGATAGGGATGGCATGACCCCTGAGACCTCCATCACCATGGAAACCTCCAGTCCAAGACTCGCTAAGAAGCGCGCCAGGGAGTGCCTTCACTAAGCCACGTCCTAAACCAGCCAGGACAAGCTCCACCTCTCCAACCCCCTGCCTTATCCTCTTAGACCGTCTTTCCTCTTACTTACCTCTTATCCCTTCTTTTCCTGCCCTTATCTTTGCCTTACGTTGATGAAAAAAGGACTCGTCAAACTACAGTTTGCCTTGTGAAGGGATATTGTGCATGTCCTGGCTGCTATAGAATGTTTAGAAGGCAGCCTGCAGGCGTTCAGGAGTGTATCTGCATATTAACACGGAAACATTTgtgaaaagaaattttaaaatacaaatgacACATAGAACCGATGTGTTCTAAATCGTTCACTACAAGAGACCTTAAACTTTATACTGAGTGGGGAAGTGGATATTTATGTTGCAGCTAAACATACTGCCAATCCCATTGAGAAACTCAGGGATTTGAGGCAAAGAAACACTAAAAGCCACATTTCATAGGTGAGACAGATCCTCAGGATCGTCATCCACTGAACTAACCGGTGCCTACGTTTAAGGCTCGAGCAGCCATCACTGAAAATGTGCCACGTCTACTCACAATAAGCTCCGAGTTAACTAACAAAGAGCACCGTGCGAGGAAACACTTTATTGGGTTTAGTGTTGAAGCATTATTGTCTGAAACTCTGTTGGAGCTGTCGCTGTTTGCCGCTTTAATTGAGTTCAAACAAGCATGTGCAATGCAGTTGTGCCAGCTTTCACTGACACTGGAACTATGTGTTTTATAACAATGAAAGACCGTCAGTGCAATATTATGACTTGTATTCTTACTCATATTATCCTGTAATACTACTGAAATTGTTCTTGGACAGTATTTGCATGGGGAAGgtagagaaaaaggaaaatatcacCTTTGTGTTGTGCTGTAAGGTGAGGTTCACCAATACTTGCCAAAGTTTGAACTCCTAGTTTCCCTTTCGTATTACCTTGTCCGTGTCATTAACCAAGATGtttaacagcttttttttttttaattttagtgcCATTTTAACATCTTAAATGAAAGCGATATTTTGGACATGCCTTGATTAAGGAGAGTGATTAATATTGCTGGATCAtatttgattttctttaaaagctcAATGGCAAGTGAGTATGTGAATTAGGACCAAATCATGTTTCTGCCATTCACAGCGAGGACACAATAAATGTTGGTAACATCTGTGAATATGGGCATCGTatagaatagatttttttttaaaatgtcacaccTTCCTTTGTGCTTAAAATGCGGTAACAAACTTTGGCAAGGATCTGGTGGGTCCATAATTATGCTACTGATGCCACAAATATAAGTAAACTGTCACAGTTTTGAGGTGTTCCTTAGCTGCTTGAgtatgttttctgtttatttttttctttgctgtataTAATTCACTGCAGTGTCATTGTGTGGTTctcttcactgttttttttttttttttgctctatatGCAATGGTTCAGTATCTGGGTAGCTGTGCAATACTTTTAATCACAGTGTTAATCCTTCCCTTGGAGCAAAATTTGCTATTTCTAGGCTCCTGAGTTGCCAGTAAAGCTCTAGTGTTAACAGTTATGCTAGTTTACACAAAGCCACAGGTTTTAATGCCTGTTGTTATAAACCTCAAGGTGTTGCTTTGCTTGCCTTTAAGCCAGAGAGCCATTATAGTTCGCTCTCAGCTGCAAAAAAGAACTCAAACACTTTTAGCTACTGCTTGTTGTTAGTTGTAgatactgaaatatttgaagCAACAAGCCTGGCTGTGTTTGCGCTCAGCATTATTCTCGGCAAGAACCAAGAAGAAATCGTTTCAAAAGTAGAGTAGGATGGAGGCTCCCCAGTTAATCAGATAACTTCAGCCAGAACTAAGGATTAGCCAATAAGATGTGTTTTGGCTTAAATTGCTATGAAGAGGTTTTGAAGAATACCAAAGTGAAGCCTTTTTCAAAAGTGAATTTGTCTGGAACTCAGTGAGCGTAAAGAAAAGCCTGCGTCTGAAGCATTAAGATGGACAGACGCTGTAACCAGCCATGAGAAACTGAAAACtgtattatgtgtatataatgagTGAAGGCTAATTTGTTGCCACGGaaattgttgtgtttgtgtaatgcaATAAAAGGTCATGGATGCATTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378470 lncRNA downstream 162506 13144063 ~ 13144271 (-) True G319568
TU378461 lncRNA downstream 170188 13136385 ~ 13136589 (-) True G319559
TU378459 lncRNA downstream 170917 13135604 ~ 13135860 (-) True G319557
TU378446 lncRNA downstream 187666 13118788 ~ 13119111 (-) True G319544
TU378398 lncRNA downstream 237255 13069299 ~ 13069522 (-) True G319496
TU378596 lncRNA upstream 45173 13422351 ~ 13425952 (-) True G319673
TU378597 lncRNA upstream 50833 13428011 ~ 13428963 (-) True G319674
TU378684 lncRNA upstream 209913 13587091 ~ 13587531 (-) True G319754
TU378700 lncRNA upstream 235342 13612520 ~ 13615743 (-) True ccl25a
TU378702 lncRNA upstream 252069 13629247 ~ 13629457 (-) True G319766
XM_026925801.2 mRNA downstream 11799 13285372 ~ 13294978 (-) True cactin
XM_026925700.2 mRNA downstream 141560 13161536 ~ 13165217 (-) True LOC113533516
XM_026925491.2 mRNA downstream 306790 12986262 ~ 12999987 (-) False cdc34b
XM_026925492.2 mRNA downstream 306837 12986262 ~ 12999940 (-) True cdc34b
XM_026925673.2 mRNA downstream 341996 12940528 ~ 12964781 (-) True kcnj9
XM_026925528.2 mRNA upstream 9213 13386391 ~ 13388837 (-) True LOC113533394
XM_026925152.2 mRNA upstream 212391 13589569 ~ 13592666 (-) True admp
XM_026925153.2 mRNA upstream 217429 13594607 ~ 13599684 (-) True im:7138239
XM_034297717.1 mRNA upstream 235338 13612516 ~ 13615523 (-) False ccl25a
XM_026925603.2 mRNA upstream 281516 13658694 ~ 13661180 (-) False capsla
trnaw-cca_17 other downstream 1758338 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2778527 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4333565 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4352667 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4421068 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1354734 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 1850294 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2310080 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2310080 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 2980396 16357574 ~ 16367004 (-) True G321462

Expression Profile