RNA id: XM_026925076.2


Basic Information

Item Value
RNA id XM_026925076.2
length 8935
RNA type mRNA
GC content 0.47
exon number 30
gene id LOC113533157
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13437035 ~ 13565203 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCGGAATATCGATGACATCAACCACCTCCTATTCTCTCCTCGAGCGCGCAGCCGACCAAAGCTCGTGCAGGAAAATGGGGGCGCGGAGATAACGGTGTCGAAAAGAGGTTGAACCTGCGACTCCAGAAGCTTTGAGTCACTGTCTCagtttctgtctcagtctctgtctctgtctccggATACGCGGAATTACCATCCAGAGCCGCTCGCGCGGACGGACAGGAAGCGCGAGCGCACATGAATTTGTCCCAACGCTGCAAACAACAAAGgcATTCGGGTTCAAACTGCTGAGGATTACCAAAACCAGGACATGAAGCCAAAACGGGTTTAAAAAGACAGTGTGtgtGCCTGAACGATTGTGTGTGCTTCCCCGTCATGGCTCCTGGCTCGGTGGAGGTGTTTCCCTCTTCTCTCTTGCTCCTGCTGGCCCTCCTGCTCTCCTCGTTGTCCAGCACCTGCCATGCCTTATCTTCCCCCAAGTTCACAAAGATCCCGACAGATCAGATAGGAGTGTCCGGTGGTGTGGTGTCCTTCGTGTGTCAAGCCACAGGCGACCCGAAGCCACAGGTCATCTGGAACAAAAAGGGCAAAAAGGTCAACTCTCAGAGGATAGAGACCATAGAGTTTGATGAAGGAGCGGGGGCGGTGCTTCGTATCCAGCCACTGCGAGCTCCGCGAGATGAGaatgtttatgagtgtgtggCCCGGAACAGTGAGGGCGAAATCGCAGTCACCTCCAAGCTGTCCATTATCAGAGAGGACCTGTTGCCATTTGGCTTCCCCAGTATAGACATGGGTCCCCAGCTGAAGGTGGTGGAGAGAACGCGCACTGCCACCATGCTCTGCGCTGCCAGTGGCATCCCCGATCCAGAGATCTCCTGGTTCAAAGACTTCCTTCCTGTGGAGCCAGCGCTCAGCCAGGGTCGTATTAAACAGCTACGATCAGgTGCCTTGCAGATCGAGCGGAGCGAGGAGACAGACCAGGGGAAATATGAGTGTGTAGCATCGAACTCGCAAGGAGTACGCTACTCCTCCCCGGCCAATCTCTACGTGAGAGGTACGGATTACATTCGTCGAGTGCCGCCCCGTTTCACCATCCTGCCCTCGAGTCATGAGATCATGCCAGGAGGAAGTGTAAATATCACATGTGTAGCAGTGGGTTCCCCCATGCCCTACGTGAAATGGATGCTGAACTCTGAAGACCTGACGCCTGAAGACGAGATGCCGGTCGGCCGGAATGTTCTGGAGCTGAATAGCGTCCGTGAGTCAGCCAACTACACCTGCGTGGCCATGAGCAGCTTGGGGATTATAGAAGCTGTGGCTCAGGTCATCGTTAAATCATTACCCAGAGCTCCCGGCACCCCCATCGTGACAGAGACAACGGCCACAAGCATCACCATCACCTGGGACTCTGGCAACCCAGACCCCGTGTCCTATTATATCATCCAATACCGGGCAAAATCACCCGACAGCAAGTTTGAGACGGTGGATGGCATCACAACGACGCGCTACAGCATCGGTGGCCTCTACCCCAACACTGAGTACGAAATCCGTGTCTCCGCATTCAACACCATCGGCCAAGGCCCACCTAGCAACAAGGTGGATGCTAGGACAGGGGAGCAGGCACCAGCCAGCCCGCCTCGGAACGTCCAGGCTCAAATCATCTCACCCAGCGCAGTAACAGTCAGGTGGGAGGAGCCTGAAGAACCCAATGGCCAGATAAAGGGCTATCGAGTTTACTACACCATGGACCCGTCCCAGCCAATGAGCAACTGGAAGATCCATAATGTTCAGGATAGTGTGATCACTACCATCCAGAGCCTGGCTCCATCTGAGACCTATACCATCCGTGTGTTGGCTTTTACCTCTGTTGGAGATGGCCCCTTCTCTGACTCAGTGCATATTAAAGTCCTGCCTGGGGTCCCAGGCCAGCCAGGGAAGTTCCGAGTGGGCAAAGTGAGAGATACGAGCATCGAGCTGATGTGGGATCCGCCGTTCTCTAAAGAGCCCATCAAGAGCTACGAGCTCATTTACAGAGCTGCCAAACATGGCACGCAGGAGAAGAAGGGCTTTGAGCCCAGGTCCTCGTATGTTGTCGAGGGTCTGCGAGCAAACACAGAGTACACCTTCTCTCTGGCGGCCATTTCCAGCAAAGGCATCGGAGCCTTCACCAATGAGATCATCCAGCGCACTGCACAAGCCAATGTGCCTAGGAACTTTTCTGTGAATCTGGCGACCAAGACGAGTGTGTTGCTGACATGGGAGTTTCCGGAGAGCAGCTCCCCCTACCGCTTTACTGTGGAGTATAATCGTCAGAAGATGGAGGTGGATGCTCGTTTAAGGAAGGCTGTGATCCCCAACCTGATGCCTGACACCAGCTACGATTTTAAAATCACCAGTCCTGAGGGCAACCTGGGTGGCCTGAGACACCGCATCCATGCCAAAACCTCACCTCCCATGGTCATCAATCGGCCTGAGATTGACCACAGCCGGGACACTGAGACCACCGTCACCATCATACTGCCCTCACTGGACACCAGGAACAACGTTAGGAATATCTATGTGGTGGTGGTTCCGCTGAAGAGAGGCCGAGGAGGGAACCGGCATCTAAAGAGCCCAGATGAAATGGACTTGGAAGAGCTGTTGAAGGACATTAGCCAGAAGCAGCATGACCCACGGCAGAGGCAAGTGGACCTGCGTCGCGCCTACATCACCGCCCGCTTCACTCCGTCCACCCTGCCTGCGTTCTTCACGCTTGGGGACCAGCTGGACTATGGTGGCTTTGATAACCGTGCTCTGGAGTCTGGCCAGGAGTATGTCTTCTTTATCCTCGCTGAACTCAACTCCACCACTGGGaaGATGTTCGTTGCCAGCCCCTACACGGACCCGGTCATTGCACCTGACTCAGACCCCCAGCCTCTGGATGCTGGAGATGGACTCATCTGGGTGGTAGGACCTGTCCTGGCTGTAGTCTTCATCATCTGCATCGTCATTGCTATCCTGCTGTACAAGAACAAACCAGACAGCAAGCGCAAAGACTCTGAGCCTGGCACCAAATGTTTACTGAACAACGCTGAAATGATGGCTCATCACCCCACCGACCCCGTCGAGATGAGACGCATCAATTTCCAGACACCAGGTATGATGTGTCACCCTCCTATCCCAATCTCCGTCCTGGCAGAACACACCGAGCTTCAGAAGGCTAACGACAACCTCCGGCTCTCCCAGGAGTACGAGTCCATTGATCCCGGGCAGCAGTTCACATGGGAGCACTCGAACCTGGAAGTGAACAAGCCAAAGAACCGCTACGCTAACGTCATTGCCTATGATCATACCAGGGTCGTCCTCTCACCAGTGAATGGCATTATAGGTAGCGACTACATCAACGCAAACTACATTGATGGCTACAGGAAGCAGAATGCGTACATCGCCACACAGGGCCCGCTGCCTGAGACATTCGGAGACTTCTGGAGGATGGTGTGGGAGCAGAGAGCTGCGTCGATAGTTATGATGACTAAACTGGAGGAGAAATCACGGATAAAGTGTGATCAGTACTGGCCCAGCAGAGGCACAGAAACGTACGGCTTGGTGCAGGTCACTCTGCTGGACACCATGGAGCTTGCCACGTTCTGTGTGCGGACCCTCTCATTGCACAAGAGTGGCTGTAATGAGaggagagaggtgagacagttCCAGTTCACGGCATGGCCTGATCATGGTGTACCCGAGTATCCCACTCCATTCTTGGCTTTCCTGCGCAGAGTCAAAGCCTGTAATCCTCCAGATGCAGGGCCTATCATTGTTCACTGCAGtgcggGCGTGGGACGTACAGGCTGCTTCATTGTGATCGATGCCATGCTGGAGCGTATCCGTCACGAGCGCACCGTGGACATCTATGGTCATGTGACGCTGATGCGCTCTCAGAGGAATTACATGGTGCAGACGGAAGATCAGTACAGCTTCATCCATGAGGCCCTGCTGGAGGCTGTCACCTGTGGCAACACTGAGGTGGCAGCACGCAGCCTCTACTCCTACATGCAGAAACTGGCACAGGTGGAAAGCGGCGAGCACGTCACAGGCAGGGCACTGGAATTTAAGcGCCTGGCGAACACTAAAGCCCACACCTCCAGGTTTGTGACGGCCAACTTGCCCTGCAACAAGTTCAAGAACAGGCTGGTAAACATCATGCCATATGAGACCACCCGCGTGTgcctgcagccaatcagaggccTTGATGGCTCTGACTACATCAACGCCAGCTTTATTGATGGATACAGGCAGCAGAAGGCATACATCGCCACACAAGGTCCTTTAGCGGAGACCACAGAGGATTTCTGGAGGATGCTGTGGGAGCACAACTCCACCATCGTGGTCATGCTTACCAAACTGAGAGAAATGGGGCGGGAAAAATGTCACCAGTACTGGCCTGCAGAACGCTCTGCCCGCTACCAGTACTTTGTGGTGGACCCCATGGCCGAGTACAACATGCCTCAGTATATCCTGAGAGAATTCAAAGTTACAGATGCAAGAGACGGACAGTCACGGACAGTCAGGCAGTTCCAGTTCACTGACTGGCCCGAGCAGGGAGTGCCAAAATCAGGAGAGGGCTTCATCGATTTCATTGGGCAGGTGCACAAAACCAAGGAGCAGTTCGGGCAGGACGGGCCAATCACTGTCCACTGCAGtgcggGCGTGGGTAGGACGGGTGTGTTCATCACTCTCAGTATCGTGCTGGAGAGGATGCGTTACGAGGGAGCTGTGGACATCTTCCAAACAGTCAAAATGCTGCGCACACAACGACCAGCCATGGTGCAGACAGAGGATGAATACCAGTTCTGTTACCAGGCCGCCCTCGAGTACTTGGGAAGCTTCGATCACTATGCAacataaaaggaggaagaacaCACTCATCTCACCAACAACCTGTCTCGATGTTTTACAACGCTACAGAAATTCTCTTGTTCCATGATGCCATTGCGAAGGGGAACGTTTTGAAGTACGATGACATCGAAAAGAAATttggaggaggaaaaaatacgacaaaatgacaaatgaaaAGGTTTTCTCTCAAGAGCTTCCCAGGGAAGTTCTGTATCACAGCAAGCTTATTACCTCAGTGTTCAGTTATTGATATTAATGTCGTGGTCGCCTTTTTAGAAATATTACAAtgtggataaataaatgaaacctctttcaaaacaaaaaaaaaatatgatatgtaaaaaaaaaaacaaacaatgaaatCAAACGCCTGGAAAATTGCTGCACTCTTCACTGGGAGTTTAACCCGAACTGTATTTGCCAATGAAAAGATCAGATGTGAACTCCAGTCAGCTCCTGAATGACGAAGGTTTTCGGTGCCGTAAAGGAAGCAGAACTCGTACCTTCTGTGCCTAAcggagcaacaacagcagagGGTCAAAGGTTATGGATTCTCTTGGTTTCGGAGGCGAACGGCTGTATCACTGACTCTTCTTACACTACATTAGTAATGTGATATAATCAGCTTCAGTGTCTCTTTTACTCCTGGTCAGTTGGAGCGCTATTGTGATTGAACCTTGCCTTTGAAGAGCTGTCAGATACGTCTATAGATTTTGTCGGATTTCGACAGAGCGCCTGTGAATACTGTTATTCTGATGTGtgtcactctttctctttctttctctttctctctgtctctttctctctccacaaATATGCTGCTTATACCCTGTGTGTGAGAAGAAAATATGAGTTAGCAATGGCTTAAATTTAGTCATCTCCTGAAAATGTCGAAAagtggagcttttttttttattataagatCCAAGACTGCAGATCAAGAAGCTGGTTTTTTTGAGCCCGTATAAAGACCATACACATACAATACGCCCTTATTCTGTTCTGAGATAAACACTAGGGGCAGTAATGACCATAACATGACCATGTATATATCTTGGCAGAAAATATAAAGCTGAAGTATTTCTAATTCTAATGGTCCTGCCAACTCTAAAGGTCTCAAAAAGACTCCTTTCACAAGTAAATTTCAAAGCATTCTAGTGTTCttactaaaaactaaaaagctTCGTAAAGTTGAATAAAAACCCTTGCCAAAAGCGAAGACTGACTGCAGAAGCCAGTAAAAGTCAGTTATTCCAGTTGTTCTCTCGCTTAATTAAACTGAGCTAGAagaaaatgttatgtttttgtttagtgGAGGAGTCGTGTGTAGGCATAGCACAAATGAGTTTCATATGAATAGTTACAGAGGATTTAGCACAAGCTGTCTGAAAcggaggaggatggaggacaGTTTTCGTAGGTCTGATACTCTTCTCGTCAAGAGACTAAAAGTGAGCCTTATTGTCGTCGTCAAATATTTAACCAACATGATTTTTTATTTCGTTTTGCTGATATTAtgcttgtatttttaataatatttatattattttggaGTACTTGCTGGAATATAATCGACGAGATGTTGTGTAGTTGGCAAGCTAACGTGACTGTACATGGTCCCTCTGTACGTTTTTTGATATTTCCTGTACAATTCTCTCTTAGAGTGTCCTGTAGGAACAGAACAGCACAAGGCCTGGAATGAGCttgttcctaaaaaaaaaaaaaaattgaattatcTCCCAGAAGGGCCAAACAACCCTCCGTACTTTTGTGAAAATGACCATGTACCCTGTTTCTCGTCAGAAAGATCAGCTCTCCAGAGTGTCAGTACTATAAATATAATTCTCctgctgataataataataattacaccaaAACAAATGACGACTACTTAAAAGTATTCGAGAGAGATTAAGGAACATTAAAATGACCACAGCGACTTTTAGAGCCTATTCTTTAAAGCACATACTGATGgagttgatgatgatgttatttTAACTTATATTTATTACCCTTTATTATCCAATCTACTTATTTATATTAGATTACGGCTGATGTTTGTTGATATATATGGAAATGGTTATGGTGAAATTGCACAATATACAGCATTATGATCAAAATAGCTCTGTAACAATGGAGCATATGTTCAAATGCAGTTTAACATGGGCTGAAGTGATAGAGGAGATGAACTTTTCTCCTCATCCCTCAAGGTAAAGCACATATGAAAGACTTACAACTGAATATGTAACAACCTTaaaagtacatacagtatatatagccAGCTTTTGACATATCTTACAAATGTCACAGCACATACAGTGCCCCAGATAGTATTCACCCCTAGtgattctttctctttttgctgtgtTGTAACATCAAATTTAAGTATATTAGAATGGGATTTTTCCCTTGCTCCTTTAGAAGtgactctctacagaaataaaattaaatgaattatataGATGTCCtcagaaatatttacaaataaaaaatctaaacactGCTTAATTGAAAAGTGTAAAGTTGAGAGACAATACTTAGTGCGTTGTCCTTTTGCAGAAAGTACAGCTTTGAGTCGTCTCAGATATGCCTCTGtgagctttgcacattttgattttggcattttctcCCATTCCTCAATGCAATTTTTCTCCAACTCTcccaaattagatggagttgaCAACAATTTTCAGGTCATGCCACGGATTTTCAATTAGATTTAAGTATAGTCTTTGACTCGGCCATTCTAAAACACAGAGCTTCTGTTTTCAAGCCATTCTTTTGTAGTTTTTGCTCTTAGACACAGATTTCTGGCTGACTGGAACAGGTTCTCCTCAAGAATCTGCTTATATTGAGGTCCATCCATGTTGCCCTTGATGGCAACAAGATTTTCAGGTCCTCCTGCTGGAAAGCAAccccagagcatgatgctgCTACCACCATCCTTGGTGATAGGAATGGTGTTACTTGAGTGTTGGGCTGTGTTTGGTCTGTGCCAAACATAATACTTATAGACCAAATGTCTCAAAATCGTTTTCCAAAAGCTCTCAGATTTTGTCCCATGGCATCTAGACAACTCCaggaattgtttttttttaaaaaaatgttagcctTTCTCAGAAGTGGCTTCCTTCTGGCCATTGTCCTAAATCCCAGAtctgtgaagagctgatgatatCGTTGAGGTCTGCACAGGTTCTTCTATTTAAGCCAGTGAGCTGTGTAATTCCTTCAGTGTTGTCAACCTcttgacacttctctgacaaaTGCCCTGCATGCCCGTGTGCTCAGTTTGGAAGAATGGCCTGATTTTGGTAGTGTCtgggttgtgccatatttttcccactttgttataatggatttcTTAGTAGTCCTAGGGAGTTTCAAAGCTTTGATGATCTTTTTCTAACCctctccagttttttttttcctactaaCTACTATATCTTGAAGCTTCATGGGCAGTTCTTTGGTCCTTGTGAGAGCACGACTGATCTGATCTGACATTTTATCTGTGAGACCTCCCAAAGTCAGTGATGTTTACTGTGCAAGCATACAATTGGACACaggtggatttgaaatgaatgcAGGTGTaccttatttaacatttttagtgtgagtgctcaagaaaattaaatactttAGACTGTTAAAAGAAGGGGGGGGGGATACTtatcaattaattttttaaaattattctgaGAACatccaaataatttatttaatgttatttatttagagaGTTACTTCAAaagaaccagaaaaaaaaagcattctgatatatttgatgttgcaatacagcaaaaagagaaCTAATCACTAGCGGGTGAATACTTCCTGAAGGCACTGtaaaagagggaaaataaaGCAGGATAACTCACAGAATTTGGATAAAAAATGGACCCCAAGATTTTAATACATTGCAAGATATTCAGGCCAAGTGCTAACAAGTGTTCACACTTTCAACCTCTTACTTCTCTCTGCTGATTTATTTGAAATCATATATGTAGATATGTTGACTttgtaataaaaacagaaagactgGATACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580330.1 lncRNA upstream 15652 13418555 ~ 13421383 (+) True LOC117599983
TU378255 lncRNA upstream 25428 13363825 ~ 13411607 (+) True G319382
TU378196 lncRNA upstream 130892 13239147 ~ 13306143 (+) True G319342
TU378192 lncRNA upstream 191765 13202033 ~ 13245270 (+) True G319340
TU378125 lncRNA upstream 279306 13156524 ~ 13157729 (+) True G319275
TU378685 lncRNA downstream 24396 13589599 ~ 13590316 (+) True G319755
TU378818 lncRNA downstream 291762 13856965 ~ 13894441 (+) True G319867
XR_004576917.1 lncRNA downstream 339324 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA downstream 343660 13908863 ~ 13909635 (+) True G319886
XR_004576915.1 lncRNA downstream 346368 13911571 ~ 13919146 (+) True LOC117595739
XM_026925726.2 mRNA upstream 11069 13422324 ~ 13425966 (+) True fem1a
XM_026925750.2 mRNA upstream 26224 13390167 ~ 13410811 (+) False LOC113533546
XM_026925748.2 mRNA upstream 26224 13390198 ~ 13410811 (+) True LOC113533546
XM_026925747.2 mRNA upstream 26225 13390167 ~ 13410810 (+) False LOC113533546
XM_026925890.2 mRNA upstream 131598 13299508 ~ 13305437 (+) False prkab2
XM_026925179.2 mRNA downstream 6506 13571709 ~ 13587075 (+) True LOC113533215
XM_026925181.2 mRNA downstream 9403 13574606 ~ 13587075 (+) False LOC113533215
XM_026925524.2 mRNA downstream 71262 13636465 ~ 13658131 (+) False ranbp3b
XM_026925522.2 mRNA downstream 71263 13636466 ~ 13658131 (+) True ranbp3b
XM_026925525.2 mRNA downstream 71263 13636466 ~ 13658131 (+) False ranbp3b
TU378000 other upstream 664168 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1864138 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1887847 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1888856 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1967536 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 272230 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 272230 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1262062 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2303813 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2364749 15929952 ~ 15936768 (+) False gpx4b

Expression Profile