RNA id: XM_026925092.2


Basic Information

Item Value
RNA id XM_026925092.2
length 2427
RNA type mRNA
GC content 0.39
exon number 5
gene id twsg1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13988603 ~ 14003700 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtagcagacACAGGCTTAACACCAGCAGCTGCTTTCTGATCCACACGgtgtgtatgtatgtatatataccgGAGTGGTGAGGATGAGGTCggctctcctcctccttctccttctctcctcacTCTGCTCCCTCCTCCTGCTCTCCCACATCCCGATCATCTCGGCATGTAACAAAGCTCTGTGTGCCAGCGACGTGAGCAAGTGCCTGCTACAGagcctGTGTCAGTGTCGACCATCGGAAGGAAACTGTTCCTGCTGTAAAGAGTGTATGCTGTGTTTGAGCACACTATGGGAAGAGTGCTGTGACTGTGTGGGCATGTGTAACCCGAGGAACTACAGCGAGACCCCGCCCACTTCCAAAAGCACAGTGGAGGACCTCCATGCGCCGATCCCGTCACTCTTCAGGGCCCTCACTGATGGAGACACTCCTATCAACATGATGGTGGTGTCGTTCCCCGTGGCTGAGGAGCTCTCGCACCACGAGAACCTCGTGTCCTTCCTGGAGTCTCTGGAGCAAGAGCATCAAAATGTCTCGCTGCCTGGGACAAGCATCCACGACACCTATGATAAAGATAACCTGTGCACGGTGGTGTATTTTGACGAGTGCTTGTCTATACGTCAGTGTAAGCAGTACTGTGAGTCGATGGGAGCGTCAAAGTACCGCTGGTTCCACAACGCGTGCTGTGAGTGCATCGGGCCTGAGTGTGTGGATTACGGTAGCAAAGCGGTCAAATGCATGAACTGTCTCTTCTGAgagcgctcacacacacacacacacacactctcacatggGATTGTGTTTCAGTATCTTATGGTTATTCCATCTTTTATTGCTGATGATGTGTAATATGATTTTAGTTTTCTTTGCAAAAAAATGGGTACAGTCCATCTTTCctgacattattaatattaattgttGATGATCTCAGCACAAATGATTGTGTGCTTAACCCTTTCCTGTCTGTGCAGTCTGTATCATTGTTAGGCACTAGATGGCACTCTCTTACAAAAAAGCTTCCTGTCTGATCACATAGCGAAGAGAAAGTGTATATACCATTAACCATTAATGCAGAAGAAGCAGTGCTTTGAAATCATAtataagtattattatttatatacagtatgaaacCTTTGTTCAAAGAAACCTATTGCACAAGAAGTCTATACCACGTACAGTATATCTACAGGTAATGCGTTACATTATGGTTCCCTTAACTggcattatttaacacattagttaacatgaacaaaccatgaacttcagcattaatgcaccataattaacattaacaaattaactAACACTTATATTAATTGATTGATGAATAAGAAACCAAATAAGCCAAAATATTAACCAACGTTCATACCATCATGAATAAAATTAAGCTCACAATGAGCAATATGAACACCTTAATGAACAGACCTGACActgaatacatacatatatatatatacacacacacacacatacacacacacagctagagACCAGAGTGTACAAAGTTCTCATTTTAGTAAATACACTGAAACCTAATTTCtacatggatttatttttattcgtGGATTGACAAGCTTAAGCCTGgtgtatttcattaacatttaaacaaacatcagtTAGActaatatgtgtgtttataccacaattctcaaatctgattggtcagaaagtgttgattactttctataatagcagctttggtaatagttccagctgcaagacaaatcacaagtttctattaattctattaatgcgtttttgtttctatagtaacaactcgttcacagggacgtgtatagCAAATGCTCCGCATATGccagcttttaaaaaatgtgttgttatttctcAAAGCAAAATGACTGccatggtgaagctttctgtgaggagaacattaatggaaggagtctccagtgccagcgctttgtaactgtcagtgaGTTGttcaccacaggaaagtcttcagattattttgcacttttttctgacttattaaaacattaaatgtaagcatTAATGGATAAACATACAGCATGTctttcattaatgaattaaaaaatgtaaacttggatgtgctgttattggaaaacacacacttgtcctTGATGATTTTCCTAAACCAGCATGccatgatgtgttttattcctatttactttctaaacattccttatggtttattaatgctgaatttcatcatttcttaatgcagtaaatatgttaataaacaGAAACCTTAATGGAAAGAGTTGCCAATGTATTCTTTTTTCGAAGATATGTTTGATAATGAAAACATTCAGGCAATATTTACATTCAGTTGACTGttttagcaaaaataaactGGTAGATTTTTGAATTTGACAAAAATAGCATTCGCTTCAGTAACATCACCAATAAACCATGCACCATTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576915.1 lncRNA upstream 69457 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA upstream 69457 13911571 ~ 13919146 (+) False LOC117595739
XR_004576917.1 lncRNA upstream 78323 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA upstream 78968 13908863 ~ 13909635 (+) True G319886
TU378818 lncRNA upstream 94162 13856965 ~ 13894441 (+) True G319867
TU378986 lncRNA downstream 14241 14017941 ~ 14018154 (+) True G320003
TU378987 lncRNA downstream 15129 14018829 ~ 14019036 (+) True G320004
TU378998 lncRNA downstream 76549 14080249 ~ 14126913 (+) False zmp:0000000521
TU378999 lncRNA downstream 76549 14080249 ~ 14127006 (+) False zmp:0000000521
TU379021 lncRNA downstream 133962 14137662 ~ 14140523 (+) True G320032
XM_034314762.1 mRNA upstream 3547 13949726 ~ 13985056 (+) True ankrd12
XM_034314763.1 mRNA upstream 3547 13949726 ~ 13985056 (+) False ankrd12
XM_026925273.2 mRNA upstream 40811 13932646 ~ 13947792 (+) True ndufv2
XM_026925299.2 mRNA upstream 90689 13837433 ~ 13897914 (+) True LOC113533270
XM_026925301.2 mRNA upstream 90689 13837433 ~ 13897914 (+) False LOC113533270
XM_026925567.2 mRNA downstream 2657 14006357 ~ 14015371 (+) True rnf126
XM_026925245.2 mRNA downstream 111074 14114774 ~ 14127012 (+) True zmp:0000000521
XM_026925244.2 mRNA downstream 111077 14114777 ~ 14127012 (+) False zmp:0000000521
XM_026925246.2 mRNA downstream 111102 14114802 ~ 14127012 (+) False zmp:0000000521
XM_026925679.2 mRNA downstream 340894 14344594 ~ 14372193 (+) True sirt6
XR_004580321.1 other upstream 92938 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 92938 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 1215736 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2415706 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2439415 11549115 ~ 11549188 (+) True trnai-aau_17
TU379509 other downstream 823565 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1865316 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 1926252 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2096833 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2108336 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile