RNA id: XM_026925101.2


Basic Information

Item Value
RNA id XM_026925101.2
length 1368
RNA type mRNA
GC content 0.43
exon number 6
gene id dnaaf6
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9943753 ~ 9952320 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attgaattgaattgaatcttcCAGAGTTTCCATTTTCCCTTTCTTAGAAGCAGGTTTAGTTGGGGTGTCGGGAAGATGAGTTGAGCAAAGAGTATCCAGAGTATTTCCAAAACCGGGATCAGTAACAGCAGGAAGTGTATATCTACAGATACGTCCATCAGACTTTTCACCCGTTCTTTACGTTTTTCAACACTTTTTGACATATTTATTCCACAGTTACATccttaataaaacacacagcggATGTGTAAGGTAAAGAGTTGAAAGCAGACAGTTTACGGGagttataatattttttgtcagCAGAGCTACTAAAAGTTATCTGAACATGCCGCCATCTTGGAGCCTCTAGCTCAAATTTAATCATCTTcccaatgcatttttttccGGGTCCTCCGTGATCAAAAGGAATCCGCCCAATCTGGCGACACTGCACGTAGTTACCCCTGGCAACAGTTAATCTCCTTGGAAACGGTAAACAGTTCTACAGACAGCTCAGCCTCTGTCTGTAGCCTCTGAGACTTTTACAGTCCATACATCTAATTACATAAAggtaatagaaataaaatggtGGAGTTGTCATCTCTCCGAAATCTTCAGGCTCTGTCCGACTTGCTCTCTCTACCAGCCGATGAAGAAAGCGACGCAGAAGACTGCAAGAATGTAAATCTGATGGCAAACATGGGTCCTGGGCACATTGGTGCTTGTTCTTCTACTTCTAGGCAAGACAAGAATGCAGTCAATAGTGCCTATGTGAAGAACACCAAAGACATCTGGGATGTAGAGGAGGTGACTGGAGGGACACACTTTGATGACCTTGCAGATCCACGTCCTCAGCCTGAgtatgagATTATCCTGAAGCAGAGTGTGGGTACTGAGGACTTGTTTCTGGGCATGAGCCGAAAGGATCCATCCTCCATGTGCTGTGAGAGCATGCTAGTGAGGGTAAAGCTACCGGAAACTAAGGCTTCTGATCTTGTGCTGGATGTGAAGGAGAGATTTGTTGACCTAAGAACTCCAAAATACAAGCTAGGCCTGCATCTGCCCCACTCAGTGCACAGTAAGGAAGGCACAGCCCGATTCATTACAGAGAGATATGAACTGGAAATCACACTGCCCACGAACAGACCTATGGACTCCATCAACCTCACCTGAAGAGAAGGAATGAAGAACTCATGGGCTGCCTCTGAAGAAAAAGAACTGTCATCAGTGGCTGGAAAAGGAAGACTTCATagaacagaaacatttcaaGGAACATCAAGCTATGGATTGTTTCCAAGTATTTCGAGCCACAATCAACTGTTTTGGGCTTGTACCATAAACCctcttaacattttaaataaaatttgcaattactatgtttttaaa

Function

GO: NA

KEGG:

id description
K24253 DNAAF6, PIH1D3; dynein assembly factor 6, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376171 lncRNA upstream 3516 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 63997 9878915 ~ 9879756 (+) True G317621
TU376155 lncRNA upstream 67933 9874996 ~ 9875820 (+) True G317618
TU376060 lncRNA upstream 124288 9819266 ~ 9819465 (+) True G317529
TU376057 lncRNA upstream 128096 9815277 ~ 9815657 (+) True G317526
TU376260 lncRNA downstream 153446 10105766 ~ 10106921 (+) True G317703
TU376326 lncRNA downstream 204957 10157277 ~ 10157530 (+) True G317754
TU376333 lncRNA downstream 233986 10186306 ~ 10187126 (+) True G317761
TU376532 lncRNA downstream 551843 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 565268 10517588 ~ 10520208 (+) True LOC117599937
XM_034297745.1 mRNA upstream 82605 9829378 ~ 9861148 (+) False fndc7a
XM_034297744.1 mRNA upstream 82606 9829380 ~ 9861147 (+) True fndc7a
XM_034297746.1 mRNA upstream 82607 9829382 ~ 9861146 (+) False fndc7a
XM_034314568.1 mRNA upstream 115865 9788997 ~ 9827888 (+) False LOC113533145
XM_026925733.2 mRNA downstream 6673 9958993 ~ 9977916 (+) True pip4p1a
XM_026925090.2 mRNA downstream 28866 9981186 ~ 9989044 (+) True LOC113533165
XM_026925529.2 mRNA downstream 51336 10003656 ~ 10034015 (+) True lig1
XM_026925570.2 mRNA downstream 90568 10042888 ~ 10053540 (+) True mpz
XM_026925572.2 mRNA downstream 90568 10042888 ~ 10053540 (+) False mpz
TU375892 other upstream 528589 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1130933 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1674555 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1679692 8263339 ~ 8264061 (+) True G316744
TU374748 other upstream 2247834 7695534 ~ 7695919 (+) True G316413
TU376185 other downstream 7009 9959329 ~ 9977901 (+) False pip4p1a
trnar-ucu_12 other downstream 235431 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 584111 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 584111 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 611515 10563835 ~ 10568896 (+) False eif4e2

Expression Profile