RNA id: XM_026925103.2


Basic Information

Item Value
RNA id XM_026925103.2
length 3061
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113533174
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16594144 ~ 16601594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTAACTTGATTCTCTAGCAGAAAAACGAAACTTTTAAGAAGAGGGCTGTGAggactgtgagagagagaggaccaAGATTCTGTGTTGTGAGTAAATATTTTGTCTGTGATCAAAACATCCAGAGATGAGGCGTTCTCAGTTCAGGAACTCTACCAGTCTGCATGGAGCTTCCCAGTCCCCAGTAACTCAGCTGCGGTTGGTGCTGGTGGGCAGAACTGGTTCAGGTAAAAGTGCCACTGGAAACACCATCTTGGGTGAAGAATGTTTCCCATCTAAACTGAGCATGAACTCAGTGACAAAGCAATGCAAGAAGGCATGTGGAGTAGTTCATGGGCGGAGCCTAGCGCTGATTGACACTCCTGGCTGGTTCGACACCTCCCTCCAGCAAAATGAGATAGCACAGGAAGTGTCTAGATGTCTGACCATGTGTTCACCTGGACcacatgcatttctgctcaTCATACCACTCGCTCGCTTCacagaggagcagcagcagaCTGTAGATATGATTGAGGAGGCTTTCAAGAAGAACATGAGTGATCACACAATCATCATATTTACCCATGCAGACGAGCTGGAAGGAGAGCCCATTGAGCAGTTCATATCAAAACAGGGCCAGAAAATCCAGGATATTATTGCACGTTTCGGTGGGCGTTTCCTGGCTTTCAACAATGAGAACCCAGAGAACCAGGACCAGGTGAAACAGTTCCTGAAGAAGCTGGATGAGTTGCTGGAACAGAACGAGTACCGTCACTTCACCAACCAGAAAACGGAGCATCCAGAGATGAGGCGTTCTCAGTTCAGGAACTCTACCAGTCTGCATGGAGCTTCCCAGTCCCCAGTAACTCAGCTGCGGTTGGTGCTGGTGGGCAGAACTGGTTCAGGTAAAAGTGCCACTGGAAACACCATCTTGGGTGAAGAATGTTTCCCATCTAAACTGAGCATGAACTCAGTGACAAAGCAATGTAAGAAGGCATGTGGAGTAGTTCATGGGCGGAGCCTAGCGCTGATTGACACTCCTGGCTGGTTCGACACCTCCCTCCAGCCAAGTGAGATAACGGAGGAAGTGCTAAGATGTCTGACGATGTGTTCACCTGGACcacatgcatttctgctcaTCATACCACTCGCTCGCTTCacagaggagcagcagcagaCTGTAGATATGATTGAGAAGGCTTTCGAGGAAAACATGAGTGATCACACAATCATCATATTTACCCGTGCAGACAAGCTGAAAGGAAAGCCCATTGAGCAGTTCATATCAGAACAGGGCCAGAAAATCCAGGATATTATTGCACGTTTCGGTGGGCGTTTCCTGGCTTTCAACAACAAGAACCCAGAGAACCAGGACCAGGTGAAACAGCTCCTGAAGAAGCTGGATGAGTTGCTGGAACAGAACGAGTACCGTCACTTCACCAACCAGAAAACGGAGGTTGTAGAGAAGGCACTAGCAATGTTGGAAcagaaaaagcaagaaaaactAGCTGAATCAATTAAGAAGGCCAAGCAGGAAGTAAGGCAGATGGCTGAACATCGCAAGGCTGACATCATTAAAAACCTGGAGGAGGAGAAGCAAGAGATAGAAAGATGCAGGAGTCACATCAAGGTTGAAATCCTCCATTTAACAGCAgaaattaacaaagaaaatgaaaacctTTATAAAGATCCACACAGGCTGCAGTTGCTGCAGGGATCTCTACAGGGTGCAAAAAACAGCCTCAGAAGGctagaggaagagaaggagttAAGGATAAAGGAaagtgcaaaaaagaaaaaagaattagaAATATGGATCAAGGaagaagaacagagaagagagcaagaggagagagaaaaggcttCAAATGAGGATGAAAGCAAATGGtattacaatgaaaaatatttcactatTCTGAAGTACCTCATCATTTTTTTGGGAGGTGCTGGAGCTGGATTTGCGCTGGCACCTGCACTTTTTATGACCGCTGCAGCACCTGTAGGACTGGCAGCAGAGTTAACCGCACTGCTCGGACCAGAGCTTGCAGCCATCGTGATGGCAGCAGCTACAAAAGCAGCTCCTTTAATGGGTGCAGCAACAAAGGTAGCTCCATTGGTGACTGGCCTTTGTTCCATTCAATAACACAAAAGCCAAAACATATGTCTGTAAGTTTGGAGAAATCTATAATGTTGTCATCCTCTAGTCCAAGGGTGTAAAACAGGCACAGAAAATGAATGTAGAATCCGTGTTCTAATTTATTACTGTGTGGTGAACCATAATTGAATTAAAAGATAAGAAAAAAGAGCTAGTATCTGTTTTTCTACTAGAGAGCAAAATAGACCAATAAATTGATCCGTAATTCTCCATTAGAAAGCTACGAATTTTACATATAATCCTAACTGGGTCCATTTCCTAATTAAGTCCATGTATTAGTCCAGTATAATCctaattaaatccatttcagttccagtttGTAGCGCTACAAAATTTGGAAAGGTTCAAGGGGGttaacatttatgcaaaacacTGTATGGTAAAACCATAATTTAGAAATGAACATGCTAATGGTAATgaattgttcatttgttttgttggtgATACAGTGTATATTCAATCTGGCCCACTTGACATTGGACTAAGTGTCATGTGGCCTGTTACCTAAAAAGTGATTAACACCCCTGTTCTAGTCTGTCTGATGATATCAGATGTTTGTAGTGTGTAGGAAGAATAAGAAAAggaacatttttattacaatcataatctgttttattattcattttgcatATACTAATCGCAGTCATTGTACTGCTTGCATTCTTCGCTACTTAGTGTAAAGCAGCTCTGTCTTTGGGCTTTCCTTTGATGcattaattacaaaatattttactgcttacagaaaaaaacaatatattaacTAGAACTGTAATTCGAAATACTTTTATGTTAATATACTACTAGTATGTACACATTCAATTAATCAGATACATAAGTGTGTTTCCATGTAACAAAGTGTGgggttcatagatattattgcAATGATAATGTAtcctataaaataaaacaaatttgagatttttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380732 lncRNA downstream 6381 16585447 ~ 16587763 (-) False stk11
XR_003403406.2 lncRNA downstream 46643 16546254 ~ 16547501 (-) True LOC113533305
TU380718 lncRNA downstream 46667 16546239 ~ 16547477 (-) False LOC113533305
TU380713 lncRNA downstream 73774 16518388 ~ 16520370 (-) True G321505
TU380677 lncRNA downstream 192617 16399300 ~ 16401527 (-) True G321470
TU380749 lncRNA upstream 7222 16608816 ~ 16609557 (-) True G321536
TU380904 lncRNA upstream 141312 16742906 ~ 16744015 (-) True G321652
TU381014 lncRNA upstream 371933 16973527 ~ 16973753 (-) True trnal-uaa_3
TU381314 lncRNA upstream 758194 17359788 ~ 17389919 (-) True G321998
TU381412 lncRNA upstream 878848 17480442 ~ 17481385 (-) True G322072
XM_034314744.1 mRNA downstream 6328 16564708 ~ 16587816 (-) False stk11
XM_034314743.1 mRNA downstream 6331 16564708 ~ 16587813 (-) True stk11
XM_026925341.2 mRNA downstream 67561 16509561 ~ 16526583 (-) True LOC113533290
XM_026925539.2 mRNA downstream 120456 16470099 ~ 16473688 (-) False cirbpa
XM_026925538.2 mRNA downstream 120456 16470099 ~ 16473688 (-) True cirbpa
XM_026925894.2 mRNA upstream 3804 16605398 ~ 16610978 (-) True LOC113533630
XM_026925105.2 mRNA upstream 34526 16636120 ~ 16638282 (-) True foxl2b
XM_026925043.2 mRNA upstream 64035 16665629 ~ 16678051 (-) True LOC113533139
XM_026925338.2 mRNA upstream 105622 16707216 ~ 16714338 (-) True abhd4
XM_026946139.2 mRNA upstream 285512 16887106 ~ 16912991 (-) True lrrc24
TU380669 other downstream 227140 16357574 ~ 16367004 (-) True G321462
TU380217 other downstream 869788 15687258 ~ 15724356 (-) False LOC113533563
TU380215 other downstream 876649 15687258 ~ 15717495 (-) False LOC113533563
TU379938 other downstream 1364888 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 1848657 14731912 ~ 14745487 (-) False theg
XR_003403441.1 other upstream 18039 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 372094 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 479427 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 898471 17500065 ~ 17500832 (-) True G322080
TU381602 other upstream 1253735 17855329 ~ 17872108 (-) False LOC113546399

Expression Profile