RNA id: XM_026925181.2


Basic Information

Item Value
RNA id XM_026925181.2
length 2477
RNA type mRNA
GC content 0.40
exon number 13
gene id LOC113533215
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13571709 ~ 13587075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCAGTGTGAGGAGTGCTGTCTGTTGTAGTAAATGGAGCATGAAGATTCTGGATGGTAAACTGAATGATCACTCTACATagCTATTCCCTGGATTGTGGAGGATCCCCGGGGAAGTCCAAAGAGTATAAAATGAGGAGGAGTTCTGAGAGCATGAAGAGTCGTGTCCTGGATGAATCACACTTTGAACTCCTTAACAAGAACCTccagagaagcagctccataCGAACCACCAGCACAATAGATGAGGAGGGGGCTGATCGTTCAGACGGACCTCTTAATCGCAGTAGTTTCAAGAACCATAGCAAAACATTCCACAAACATTTCCCAGAAATCTCTGAGATGGAGGATCTGATTTATGCTTTCACCTGTGCCCTCCAAAAGGAAGTGCTCTACCATGGCAAGATGTACGTGTCACACCAGCATGTGTGTTTCTACTCCTCTGTTCTCCTGAAAGAGACCAAGgTTCAGATACATATGTCCACAATCCAGAttataaagaagaagaacacaGCACGGGTTGTACCCAATGCAATCTCCATCATCACCAAAACTGGAGACAAAtatcTGTTTGGGTCGTTACGGAATCGAGACGTGTGTTTCAATGTCCTGAGGTCTATATGTCCACAGCTACAGAATGCAAGTCTTCAAATGTCTCCTGTAGAAAACGGCCATGAACTGGAAGTCGACGCAATTTCCAGTCACTCCAGTCAGGAGGACAGTACAGACCCTCACAGGTTCTCTGTCTCAGGGCAGGACAGGAAGACGAGCAGCAATGTTCCTCCCTTGTCATCAGTCTCTAACATTTCCCACGTCGAAGCAAGAAACAACTCCACATCATGCAACAGCACCAACAGAGATGGCCACTCTTCAGAGGAGAACACAGCTGTCTCCTGGGTGGCCATGGTAACGGAGAAGATCAGATCTTTCCTCTCCGTGGGAGGCACGACCAGCGTCAACAAACTCGTCACTGTCTATCTCATACTagttCTGCTCCTGGTCCTGTCATCTGGCTACATTGGTCTGCGTATTGCAGCTTTGGAAGAGCAGCTGAGCACACTTGGAGCAACGACTGAGTTTGGCCTACAGAGATCGTATAAGGAAACATAACACCTTGCCTGCATGAAGAGCCTGAAACATCCTGGAGGAGTCAAAACAAAGAACTTTCCATCTCTTAACATGCAGCACAACACAAGTCTTCACTGGCACAGTGAACTGACCGAGAATGAATCTGAAAACAGCAGACTTTATTTCCCTGGAGGTCTGCTCAGACTCTGGTTCCAGCCATGTCCCAAGTAGTGCACTGCATTTGGTGGTGGTGTAACCAAATAGAGAATTAACTCTTTAATGCATGGCATCCACCCTCAGGTACAGCTGAATTAAAAGTGGATtgaattggattttttttaggaaaGTATTAGAtacaaatatatgtaatatgccTCTACAGCACTTGGTGGCAAAGACATTAGATCATTACTATTCTGTAACACAAACCATtattctgatcagggttgccagaGTCATGTTTTTATGCCAAATTTGGCTACGTCTGAAGCAAAGTTGCAGTTGGAAAGCATGTCTGTAGGTAAAAttagatcttgttttaaagcaaataatctgaattaattCTAATCAATTTCAAACACAGGATATGATGAAAAAAGGGAAAGTGTTagtgcagacagtgtatctttcatttctgttttaatgtgGTTAATGTCCATACCAAATGATAAAAAGGTGTATTGTAGATATTGCAAGTCAGAAATGTGTGTACACCATTACACCCATACAAAGAGTAAGAAAAACAAGGATAATGCATTTCCCTTTTCCAGTATCTGAACTTTTGGGGCTAATTTCAGGACATACTTATGGTTTTTGAAATGTAGCTGGGCTAGAAATTTCgatgagacctggcaaccctgatccTGATACATATCCCAATCTCTCAATCCAGAATGCCTGATTGTCAGAGATATTCCGCACACCGAATATATTTCTCCATAGaagtttgaatttttatttaaattttgaaaCCAACTGTCCACAGACATGGACATTATCCAGCAACAGTCTTTTGGACATGTCCTGGATaaaattgctcttttttttttgttcaaattaaaacattttaagcttTAGTAATTTAAGTAGTAATTAAATTTAAGTAGGTGAGTAATTAAATTTAAGTAGTAGtaaatttaagtaatttaagtTAGAATAAAAAttactctaacacacctgaagCTCATCAATGGCTTGATAGTGAGACTACACTGgtctatataataaaaataagtacaaTGTTAATTTACTGTTAGtagtacattaatatttatacttCCAACTAGGGACACTGTAGACCACttaattatattacatattttttgaaACAgaatcttaatttttttatttgaatattgtttgttttatattttagacctactattaatgaatgaattaatgcatgggacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378293 lncRNA upstream 63879 13505106 ~ 13510727 (+) True G319415
XR_004580330.1 lncRNA upstream 153223 13418555 ~ 13421383 (+) True LOC117599983
TU378255 lncRNA upstream 162999 13363825 ~ 13411607 (+) True G319382
TU378196 lncRNA upstream 268463 13239147 ~ 13306143 (+) True G319342
TU378192 lncRNA upstream 329336 13202033 ~ 13245270 (+) True G319340
TU378685 lncRNA downstream 2524 13589599 ~ 13590316 (+) True G319755
TU378818 lncRNA downstream 269890 13856965 ~ 13894441 (+) True G319867
XR_004576917.1 lncRNA downstream 317452 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA downstream 321788 13908863 ~ 13909635 (+) True G319886
XR_004576915.1 lncRNA downstream 324496 13911571 ~ 13919146 (+) True LOC117595739
XM_026925076.2 mRNA upstream 9403 13437035 ~ 13565203 (+) True LOC113533157
XM_026925524.2 mRNA downstream 49390 13636465 ~ 13658131 (+) False ranbp3b
XM_026925522.2 mRNA downstream 49391 13636466 ~ 13658131 (+) True ranbp3b
XM_026925525.2 mRNA downstream 49391 13636466 ~ 13658131 (+) False ranbp3b
XM_026925211.2 mRNA downstream 133891 13720966 ~ 13807258 (+) True LOC113533233
XM_026925216.2 mRNA downstream 133891 13720966 ~ 13807258 (+) False LOC113533233
TU378000 other upstream 801739 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2001709 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2025418 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 2026427 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 2105107 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 250358 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 250358 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1240190 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2281941 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2342877 15929952 ~ 15936768 (+) False gpx4b

Expression Profile