RNA id: XR_004580315.1


Basic Information

Item Value
RNA id XR_004580315.1
length 6617
RNA type misc_RNA
GC content 0.51
exon number 25
gene id per2
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11399884 ~ 11464769 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCCGCCGCCgcttcattcactctctcagcTCCTCATTACTGATTCGCCCACGCGAGCAGCACTCCGTCACTGGCCATGGGTTTCCACGTGAGGCATAGGCCTGCCTTATATAAAGAGACTGACGGCACTTTCAGCCAATAGTCACATAAGCATCTTTGTGCCCGCCTACTTTCATTGGAAACGCAATTTTCTGAGCCAGTCTGATTGGTCGAGGAGAGACTTGGCTGGTGGAGTTTGAATTGAGGTCATTGCTCGCGCTGGAGATTCAGGGCAACAGTGTGAGGAAACACTGAACCAAAGTAAGTGCAGTGTGTCAGGCGATACTGGAGGCAGAACCGAGAAGCCCAGGAACCTTACTGTACAGAAGTTCGCCTTGGGAGGAAAAAAGGTTGGACTGACAGGGCTGCTGCAAATGCAGGACGTGGGACCACTGGAGTGGATTGGATAATGATTGTTGCTGTGGGGGTCATCTGACTGAGAAGACACTAAATTCCAAGCTAACAAGATACCCAGGCCTAATTTGATTCCACTGTGTCATAATGCCACTGAGATGATGGGGTAATTTTCTTAATAACAGCACGAATGCAGAAGTCCATCTTCATGTCTGAAGACGCAAACTCAAAACCGTACCTATTTTCCTCTCTGGAGGGCCAGGACCAGGCCACTGGCTGCAGTTCCATGGCAACGCTTCATCGAATTGGCAGTTTTGCAGAGGCAGGAGAGCTTGGACTGGCCTCAGAGGGCAGTGACAGCAGCAGTCAGGACCCTTCTGCCTCACCCCACAGTGACCGCAAGATGGCACACTCCTTGCATGAGGATGTGGAGATGAAGAGCAGTGGTTCCAGTGGAAGTGGGACTGAATCACAAGGAAATGAGTCTCATGGCAATGAGTCACATGGAAACTCATCAAACGGGAATGAATCCACCGGAAGTTCTAATGGCAATAGCAAGGATTCGGCCCTTTTGGAATCGTCAGGGAGCAACAAGAGCTCCAACTCCCACAGTCCCTCACCTCCCAGCAGCTCCAATGCCTTCAGTCTGCTAAGTGCAAGTTCTGAACAGGACAACCCTTCCACTAGTGGATGCAGTAGTGAAGAGTCTGCCAAGGCGAAAACACAGAAGGAGCTGATAAAAACCCTCAAAGAGCTGAAGCTCCATTTACCAGCAGATAAAAGGAACAAGGGCAGCAAGTCCACcactctgaacacactgaaGTATGCCCTTCGCTGTGTCAAACAGGTTGAAGCTAATGAGGAGTACTACCAGTTGCTTATGATCAATGACAGCCAGCCGTCTGGCCTGGATGTATCCTCATACACGATAGAAGAGATCGACAGCATCACGTCAGAATACACGCTGAAAAATACAGACATGTTTGCAGTGGCAGTATCTCTGATCACGGGCAAGATTGTGTACATCTCAGATCAGGCGGCGTCCATTCTCAACTGTAAGCGGCACGTGTTCAAGAATGCCAAGTTTGTGGAGTTTTTAACACCGCAGGACATCAGCGTGTTCTACAGCTTCACCACACCATATAGGCTACCATCTTGGAGCATGTGTACAGGAGCTGaATCTTCACCTTCTGACTGCATGCAGGAAAAGTCATTCTTCTGTCGCATCAGTGGAGGTAAGGAGTGTGAGGGAGACCTGCAGTACTACCCATTCCGTATGACTCCTTACCTAATGAAGGTGCAAGACACAGAGCACACTGAAGACCAGTTCTGCTGCCTTCTGCTGGCTGAAAGAGTGCATTCCGGCTATGAAGCTCCAAGGATCCCCACGGACAAACGCATcttcaccaccacacacaccccaagctgtgtgtttcaggatgtTGATGAAAGAGCTGTCCCGTTGCTTGGATATCTACCACAAGACCTGATTGGTACACCAGTACTTCTGCACCTGCACCCAAACGATAGGCCATTGATGCTCAGCATTCACAGGAAGATCTTGCAGTACGCTGGTCAGCCGTTTGACCACTCATCCATTCGTTTCTGTGCTCGAAATGGAGAGTACATCACCATGGACACCAGCTGGTCCAGCTTCGTCAACCCCTGGAGCCGCAAAGTGTCCTTTGTCATTGCACGACACAAAGTCCGCATGGGTCCGGTAAATGAGGACGTCTTTGCAGCTCCAGCCACAGCTGAGGGTAAAGCAATGGACTCGGATATCCAGGATATCACAGAACAGATTCATCGGCTCCTGCTTCAGCCAGTACATAATAATGGCTCAAGTGGCCATGGAAGCCTAGGCAGTAACGATCATCTGGTGAGTGTGGCCTCATCCAGCGACAGCAATGGAAATGGGGTCCGTCCACGTGCAGATGATGAAGAGGGTCGAGCCAAACCTAGGACATTTCAGGAGATATGTAAAGGTGTTCATATGCAGAAGAGCCAGGgacagcagttcaaaaagagtCCAAGCACAGAACTGCTCCAGAAGAGTCCGGTAGTTCGGCCCAAAGACTCAGCATACCCAGTAAActggagagagagtgtggagGAGCAGCAGGCCACCATACAGGAAGAACTCGCATTGAAAGACCAGACTGTCTACTCATACCAGCAGATCAGCTGCCTGGACAGTGTAATTAGgtatCTAGAAAGCTGCAATGTGCCTATCACAGTGAAACGTAAATGCCAGTCGTCCTCCAATACCACTTCCTCTAACTCAGACGAGGACAAACAGAAGGCAGCTGAAAGCTCTATGCAGGTGGCTGAAGCACCTGGACACCTGAAGTCCCAAGCTGGTCTTTCACCTCTGGAAGTGTCGAAGAAGCCGAGCGGCTCGGGCGTGGTGGGCACTTCGCTCACTCCCCTGGCACTGCCCAGCAAAGCTGAGAGTGTGGTGTCCATAACCAGCCAGTGCAGCTACAGCAGCACCATCGTACATGTGGGGGACAAAAAAACCCAGCCGGAGTCAGAAATCATTGAGGATGGACCCAGTGCTGGAGACACAGCAGAAGGCCCCACTCCAGCCACTCCTCCTGCTACAGTTTCACCTCCCAGCCAGGAACGAGAAGCATATAAGAAACTAGGCCTGACCAAGCAGGTGCTGGCAGCACACACGCAGAAGGAAGAGCAAGCCTTTCTCAACCGCTTCAAGGAACTAAGGGGGGTTCACACTTTCAAAGGAGACTACCTGGAGAAGCAGAAAGGACAGGCCACGTCTGATGCCGGACCTTCTCGTGTTGGTAAACAGGGGGGGAGAGCAGAACCTGCCACTGGCCGGAGGGGCCGCAACAGAAAGTCCAAATCCAAGCGCATCAAACAGAACGAATCGTCAGATAGCACCATCTCACAGCGGAGGCAGCTGTTCAGGCAAGAACTGCAAGGACTGAACCAGACTTCATGGTCTCCTTCAGACACCTCACAGTCTGCCTTTCCCATCGCATACCCAGCCGTTGTGCCTGCATACCCCCTCCAGGTGTACCCAGGGACCAATACCATGCCACCCAGGGTGGATGCCCCACTCTCAGGATTTGGAGACAGCCAGTGTACCCAGAATCCACGCTTCCCCATGCAACCCATGCAGCCCCAGTTCCCTGCCCCTCTTGTCACACCCATGGTGGCACTTGTGCTGCCCAACTACATTTTCCCACAACTAGGAAGTGCCCCTCGGCAGCCTTTCTACCCTGAGCAGGCTTTGTTCCCACCCACTCAGGTTCCATTCCAACCCCAGACGACGTTTCCTGTACAGACTCAGTTCACGCCACAAAATCCTTTTCCAGCTCAGCCATTTCCTTTCACGCCACTGGACAAGCAACCCAAGCCCACAGAACCAGAAACGAGGGAGGAGCCTTCACGGAGCTCCACCCCTCAGTCACTGGGTGGACGGGACCAATCATCTCCACCCTTGTTCCAGTCACGGTGCAGTTCACCACTGCAGCTCAACCTTTTGCAGCTGGAGGAGAGCCAACGCACCAGTGAAAGACAGGAAACCACAGCAACTTCTACTGGTACTCAAGGGAGCACTGCAGTGGAGAAAGGAGCAAACGCTGGCACGCAGACCAAGACAGACAAAGAGCCAgaagATGCAGATGACCTGCACCACTGTGATGCTTTCTCTTCATCCAGTGATCTGTTGGATATCCTCATGCTGGAGGACTCTCGCTCCGGCACAGGGTCAGCCACATCCGGGTCCCTGGGTTCTGCTTTTAATGGCTGTGGCACGTCAGCTTGTGGAAGTGGTGGCTCTGCTAGTGGAACTGGGAGCAGTCACACCAGCAATAACAGCAGTAACTACTTTGGCAGTGTGGACTCTTCACAGAAGTCCCTTAAGGCCAAGAGAAAAGGAGGTGGTGTTTCAGGATCCTTGGAATTAGAGGAGAGTGAGAGTTTGATCAAATATGTCCTGCAGGATCCTCTGTGGCTCCTCGCTGCCAACGTGGACAAGGCTGTAATGATGACATACCAGTTGCCCTCTCGATGCCCTGATCCAGAACAGAAGAGTTGTGAAGGCAACCGTCACTCGTGTCGCAGAAATCCAAGCCATAGAATCTATGCAACTCAGCCAGGTAAAGCTCAACAATATGGAATGCCAAAGGCGCCGAAAGGAGAGACTATGGTACTACTTCAGTAGTCCTGAACACCAGGTGGCGCAGTGCTCCTCATGACCCTCCGTGAAGTGAGCACCTCTCCTGAGCGAGCACCTTCCAAATCTCGCTCCTCCTTGCGCTGATCGTCTCCGGTGCAGCTGGGAACTTCATCGACTGTACCCATGCTGAGAAGCGGGGTGTCAGTCACCCACTGTACCAAAGCTATGTAAATACTGTAGGCTCTGTGTCAGTGCCTTAAACCAAGAGTGCATCTCTCTCCTCATCACCATCACAACCACGTTCCTGGTGGTGCTGGGTTTCCTGTGGGTGCAGACCCACGACCCCCAGCTCTCTTGGAAGGAGTGAGAAATCACACGCTGGTTGGCACAATGCCATGCCAACTGTCTCTTCACCCCCTCAGTCAATGTGGCCTCAAACTCTATTGAAAGTATCAGCAAGGTTTTTCTTCATGGAGAAAAATGGGGCGGCCCACGGCCATGTATCGATTACCGTGGGCTCAAGTGAATCAAGTCACCATCAAGTATCATTATCCCCTGCCTCTGGTTCCAGCAGCTCTGGAGCAACTACGAGAAGCTAAGATATTCAAGAAATTTGATCCACAAAGCATCTACAACCTTGTGCATATCCGTGAAGGAGACAAGTGGAAGACGGCCTTCAGCACCACCTCTTGCCACTTTGAGTACTGCGTAATGCTGTATGGGCTATCTTCGATGCCAGGAGTATTTCAGTGCCTGATTTAATGATGTCTTGCAGGAGACATTGGGGAAACTTCTTCATAGCCTACATCGATGAAATACTGCTATACTCTCCACATAAATCCAGCATGTCAAGAAGGTATTATCTCAGCTTCTCAAACATCAGCTCTGTGTAAAAGGAGAAATGTGTGAGTTCCATGTGCACAAGGTGGCTTTCCTGGGCAACATCATAGGGCCAGAGGGGGTGCTCATAGACCAGGACAAGGTTGTAGCGGTAACAAACTGGCCGGTGCCAGTTAAGGAGTTACAGTGTTTTTGGGCTTCACCAACTTCTATTGATGTTTCATCCAGGGCTTCAGCAGTATAGTATCTCCACTAACCGCCCTGTTAAAAAAGGGAATCAAAAAGTTGCAGTGGAACCCCTCAGCAGACCAAGCGTTCTCGCAACTCAAGGAAGCTTTCACCACAGCACCCATATTAAAACACCCCAATCCCTCCAAGTCATTCATAATGGTAGGTAGATGCATCCAAAATGGATGTTGGGGCCATCCTCTCACAGCAGTCAGAAGAAAAGCTCAAGCTCCACCCAGTGGCCTCCTTTTCTAGGAAACTGTCCCCTGCTGAGAGAAACTACGACGTCGGAAATGAAAGCTCCTTGCTGTTAAACTAACCCTGGAAGAATGGCATCACTGGCTGGAGGGGGCCCTCCACTCATTCAAGCTTTACATGGATTACAAGAACCTATGGTATATCAAGTCAGCCAGGAGATTGAAATTTCATCAGGCACTCTGGGCCCTGTTCTTTGCCCACTTTGACTTCACTCTCTAGTATCGCCAAGGTCCAAGAACACCAAAGCAGACTCCATCTCCTACATGTATCCAGCACCCTCTTGGGAGCACTTGGAGGAGCGCATCTTGCCCAAATCAAGTTTTGTAGGAGCTCTCACCTGTGACATTGACAGGGAGATCGAGGGTGTTCAGGAGGTGAGGATCCCCACTCAGTGCCCAGTGGGGAAAAGTTTGTGTCGATTCCCATACTGGAAAAATTAAGGGCTCACACCTTCCCTGCCACACGACACACCAACTACTTCTTAGTAGTACAGGTGGTCATAGATCCTGCAAGACATCCATAGACTTATCTCATCCTGCTCAGTCTTTGCAAAAGCCAAAGTACCTTGCACCCTGCCAGCAGGCAAGCTCCTCCCACTTCCTACACCCCAAAGAGCCATGGTCACACTTAGCCATAGACTTCATAACTGATTTTCCCACATTGCAGAGAAAAACAGTCATCATGCTGATCATGGACTGGTTTTCCAAGTCCCTATGCCTCCCCTCAGACTGCCGTCAGCCTTTGAAATGGC

Function

GO:

id name namespace
GO:0016525 negative regulation of angiogenesis biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009411 response to UV biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377003 lncRNA upstream 230745 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA upstream 280057 11112953 ~ 11119827 (+) True G318332
TU376936 lncRNA upstream 390738 11007948 ~ 11009146 (+) True G318273
TU376903 lncRNA upstream 412308 10984227 ~ 10987576 (+) False G318248
TU376904 lncRNA upstream 437514 10959921 ~ 10962370 (+) True G318248
TU377440 lncRNA downstream 312875 11773943 ~ 11774148 (+) True G318647
TU377452 lncRNA downstream 337890 11798958 ~ 11799181 (+) True G318658
XR_004580299.1 lncRNA downstream 372240 11833308 ~ 11846411 (+) True LOC117599957
TU377478 lncRNA downstream 409699 11870767 ~ 11870966 (+) True G318683
TU377493 lncRNA downstream 564140 12025208 ~ 12025443 (+) True G318697
XM_034314684.1 mRNA upstream 25175 11357570 ~ 11374709 (+) True LOC117599968
XM_026925192.2 mRNA upstream 57745 11324127 ~ 11342139 (+) True LOC113533220
XM_026925193.2 mRNA upstream 61067 11324127 ~ 11338817 (+) False LOC113533220
XM_034314685.1 mRNA upstream 84006 11308021 ~ 11315878 (+) True LOC113533219
XM_026925046.2 mRNA upstream 146202 11238239 ~ 11253682 (+) True ap1s3b
XM_026925545.2 mRNA downstream 12777 11473845 ~ 11479551 (+) True itm2cb
XM_034314760.1 mRNA downstream 37259 11498327 ~ 11533561 (+) True gigyf2
XM_034314761.1 mRNA downstream 37259 11498327 ~ 11533561 (+) False gigyf2
XM_026925732.2 mRNA downstream 74065 11535133 ~ 11544725 (+) True snorc
XM_026925818.2 mRNA downstream 135631 11596699 ~ 11622845 (+) False pax3a
TU376560 other upstream 830988 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 836890 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 837270 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 1212060 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 1421983 9959329 ~ 9977901 (+) False pip4p1a
TU377149 other downstream 6231 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 87040 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 88047 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 111759 11572827 ~ 11572897 (+) True trnag-ccc_6
TU378000 other downstream 1303987 12765055 ~ 12772867 (+) False G319170

Expression Profile