RNA id: XM_026925208.2


Basic Information

Item Value
RNA id XM_026925208.2
length 3340
RNA type mRNA
GC content 0.48
exon number 15
gene id epc1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9416189 ~ 9486194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTTGGGCCGTGAAGAGCGAACGGAGTCTTAAAGAGTTTTTAATGTCCGCCATGTTGGCTATGGCGTACTGAACCAAAGAAAGAGACCGGAGCCAGTAGGAAAAGTAGACCGACAGAGAGCGAACGAGATCCGGGCTTTCCCGGTTTCGCTCGCTCCGCTATATTATACCTACAGTCAATCGAAACGTAGACTCCGGgatcacaaaataaaatctttcatGACAGCTGTATTCAAATCAATGGTGAACGTTAGGAGATCGGATACATTTATGCTGCATCTcgtattattaaaaaaatgagtaaattgTCGTTTCGGGCACGGGCGCTGGACGCTTCCAAGCCTTTACCCGTCTTCCGTTGTGAGGATCTACCCGACCTGCACGAATATGCATCTATTAATCGGGCTGTGCCACAGATGCCAACGGggatggagaaagaggaggaatcGGACAAAAAGGGCTGTGACATGGAAAGAAATGGAGGATTATTACAGCTTCCAgGAGCATCATCTGCAGCGGGCGATCTCAGCACAACAGGTATACGGGGAGAAGAGGGACAACATGGTGATTCCTGTGCCTGAGGCTGAGAGCAATATCACATACTATGAGAGCCTCTATCCAGGTGACTTTAAGATGCCCAAGCAGCTCATCCACATACAGCCCTTTAGCTTGGACACAGAGCAACCGGATTATGACCTGGACTCAGATGATGATGTGTTCGTTACCAAGCTAAGGAAGAAAATGGAGGTGGGGGCTCTGCAGTTTGAGGAGATGATCGACCGGCTGGAGAAAGGCAGTGGGCAGCAGTTGGTGACTTTGCAGGAGGCAAAACTCCTTCTCAAGGAGGATGATGAGTTAATCAGGGAGGTGTTTGAGTATTGGACCATGAAGAGAAAATCATGTAAAAGTGGCTCTCTCATCCCGGCCGTAAAACAGGAGAAGCGAGATGGTTCGAGCACCAGTGACCCCTATGTTGCCTTCAGGCGCAGAACAGAAAAAATGCAGACCAGGAAGAATCGTAAGAATGATGAGGTTTCCTATGAGAAAATGTTAAAGTTGAGAAGAGATCTAAGCAGGGCTGTTACCATACTGGAAATGATAAAGAGACGTgagaagagcaagagagaatTGCTGCACCTCACGCTGGAGATAGTGGAGAAGAGAAATGGCATGGCTGATTTTGGGGGTGAGGTAATGGCAGAGGTTCTGGCTCAGAGGGCACTAGAGAAGCCGGTTATTCCCCTGATCCCCATCACCACCAGCAGCCAGTACAGACATACAGAAAATGACCGCGACTACAAGAACAAGCTGGACAAGCCAGAAGTGGTACGTCAGAAGAGGAAGTATGAGAAGAAACCGAAGCCCTTGCTGCTATCTGGTCAGTCTACCCCTGCAGCAGTCAACAGTAAAGCCCTTAACCAGTATGATTTCCCCAGCTCAGATGAAGAGCCCTACTCACAGCTATTTTCTGGCTCCTCGGAGGCAGAAGAGGAGAATGATCCTGATGGTGTGTTTGCGTTTAGACGCAGGTCTGGCTGCCACTATCAATCTGTGTGTGGAGGGCAGGGTTTATGGCCATGGTCAGATTCTGCTGAGGGTGGTTTGGGAGATGCTCGTTACCGTTACTCTGTCACCACACTCACCATACCTCACCGATGTGTGGGATTAGCACGACGAAGGGTTGGAAGAGGGGGCAGggttcTGTTGGATCGGGCCTACTCTGACTGGAATGCTGTGTATCATGGGTTGGGCTTAGGTTCTCCCGCCCCCTCATTTACCCACCAGCCTGCTAGTATGGATACCTCACATACCATTGTCCAGACCTCTGCCTCGGGTCCTTCCTCCTGCTCCTCTACATACTCATCAGACCTCTCGCAGATCCTCCATAATATTAAGAGCTGTCGCTGGAGGCACTTCAGACCTTGGACGGCTCTGTCCCATGACTCCAATATCTTCCAGCCCTGCTCAGCACAGAAGCTGAGCTCTGGCCTCTTCAGTCCAGATAAAAATCGTGCCGACAGCAGAGCAGCTGCCGCCCCACCCATAACTGtgtttaCGGCTGAGCAGTACCATCACCATCAGGAGCAGCTAGCCTTGATGAAGAAAGACCAGCTGGAGCAGGCACAGCAGCAGCACCGAGTCAATGCCAAGACACAAactttttcatCCATGATCTTAGACTCTGCGAGTGCACAGTTTGCTGCCTCTGCACTGGTGACTTCGGAACAGCTGATGGCACTGAAGAGTAAAGAGGAAGGAATTCTGGGAGTTGGAGTCAATGGAGTTATATCAGCCTCAGGAGTCTATAAGGGCTTGCACTACACAAGAACATCCTCCACCAGCCCTATACCCACCTCTAACCATCATCAGTGCAACACCCCTACCTCCAACCCCAACAATGGAACTTCCTCAGCTAATCACCATGTTGGCTCAGACAGCCCTGCCCCTACACAGGTGCTATTAGCCGGGGCAATGAGAGTGGGTGTGCCATCATCAGGTGCAGCATTAAGTGTGCGGCATCTGCAGCGTCAGCTCACGGTTCCAACTTCTGCCCTAAAACTTGCAGCCAATGTCAACAGGCAGCTCCCTAAAGTCACAACCAGCTCATCCACCCTTGACATGGGCACCAGgGAAAATCATGATCAAGAGAAGCCAACATTGAACAGTATAACAGAAAACACTGTAGCAATGGAGGTTACGTAGCCCTGCCCCTCTTCCTTCATCACCCCAAGATTTGGGGCATCTAATCTAGGTGCTGTGCATCAGTGACATTGTGTGTCAGCGGCAGCTGTTGGGACTAGACTGCAGTGCTTGCCGTTTTTGTTTCGTTAATGTCATCTGTAAATTATGAAATAAGCATTTATTCTATGTACAGTGATGCATATTTGTTATATGGCCCTTTGTACATAACATTTACTTGAATACAGAAATTGTTCAGTTATGTTTTGCACTTAAGGAGGGGGGGTTCAAAAAACTAACTGCGACTTTGTTGGAGTGAATGgtggtgtgtatgtttgtatggTGATGTGAGATCACATGCATGGTGTAAACCTGctgttttatctatttattgtgAGGTGTTTACAGGAATTTTTagttagtatttttttatactgtgtaACCTGTTGCGGTCCtgtgtgggtgtctgtgtgtttaaccATATTATGTGTCAGTTTTCTTGTGAAAAGATGCAGGTTTTTCCCCTTGTTCTGTTCCCTTGTATTACAGTCAGCTCCCCTCATGGTCATCTGTGTCAAAGatcaagtgtgtgtatatacacacacacacacacacacacacacacacacacacacacacacacacacacactgtccact

Function

GO:

id name namespace
GO:0032777 Piccolo NuA4 histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU375937 lncRNA downstream 1060 9412271 ~ 9415129 (-) False G317422
TU375938 lncRNA downstream 1182 9411315 ~ 9415007 (-) True G317422
XR_004580308.1 lncRNA downstream 6246 9404390 ~ 9409943 (-) True LOC117599963
TU375939 lncRNA downstream 6377 9404384 ~ 9409812 (-) False LOC117599963
TU375870 lncRNA downstream 183293 9232672 ~ 9232896 (-) True G317370
TU375944 lncRNA upstream 14471 9500665 ~ 9500867 (-) True G317428
TU375993 lncRNA upstream 153178 9639372 ~ 9642911 (-) True G317470
TU375991 lncRNA upstream 153485 9639679 ~ 9642911 (-) False G317470
XR_004580293.1 lncRNA upstream 171708 9657902 ~ 9659672 (-) True LOC117599950
XR_004580338.1 lncRNA upstream 210562 9696756 ~ 9699099 (-) False LOC117599991
XM_026940864.2 mRNA downstream 442914 8969854 ~ 8973275 (-) False LOC113542985
XM_026940865.2 mRNA downstream 442914 8969854 ~ 8973275 (-) False LOC113542985
XM_026940863.2 mRNA downstream 442915 8969854 ~ 8973274 (-) False LOC113542985
XM_026940859.2 mRNA downstream 442918 8969204 ~ 8973271 (-) True LOC113542985
XM_026940861.2 mRNA downstream 443378 8969854 ~ 8972811 (-) False LOC113542985
XM_026925909.2 mRNA upstream 165381 9651575 ~ 9685425 (-) False zeb1a
XM_026925911.2 mRNA upstream 165381 9651575 ~ 9685340 (-) False zeb1a
XM_026925910.2 mRNA upstream 165381 9651575 ~ 9684514 (-) True zeb1a
XM_026925913.2 mRNA upstream 165381 9651575 ~ 9671567 (-) False zeb1a
XM_026925912.2 mRNA upstream 176263 9662457 ~ 9685427 (-) False zeb1a
TU375761 other downstream 442977 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 462079 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 530480 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 927560 8477223 ~ 8488629 (-) False vcpip1
XR_004576923.1 other downstream 1557575 7858496 ~ 7858614 (-) True LOC117595746
TU376553 other upstream 1041088 10527282 ~ 10528250 (-) False ccl20a.3
trnaw-cca_17 other upstream 2062174 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 5245718 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 5741278 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 6201064 15687258 ~ 15717495 (-) False LOC113533563

Expression Profile