RNA id: XM_026925218.2


Basic Information

Item Value
RNA id XM_026925218.2
length 3306
RNA type mRNA
GC content 0.40
exon number 12
gene id napgb
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13807775 ~ 13819461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGGGTGGGGGGGTGAGGAGAGCGCGCTCATCCCCTCAGAGCTGTGTGAGCAGAGTCCTGCTTCCCTGCGCTGCTCTTCATCCTTCACTGCTTCCTCTTCACAAAATGGCAGCGCAGAAGATAGCCGAGGCACACGAACACATCGCCAAAGCGGAGAAATGCTTAAAGACCAGCATGACCAAGTGGAAGCCGGACTATGATGGAGCCGCATCTGAGATGGCTAAAGCTGCTGTGGCTTTCAAAAATGCAAAGCAGTTCGAGCAAGCAAAGGATGCGTACCTGAAGGAGGCAGAGTACCACACGGAGAACAAAGCATTGTTCCATGCTGCAAAGGCAATTGAGCAAGCAGGTATGATGCTGAAGGATATGAAGCGACTCTCGGAGGCTGTTGAACTGATTGAGAAAGCCAGCGTGATGTACGTGGAGAACGGAACATCAGGAACTGCAGGCATGGCTTTGGACAGAGCCGGCAAACTTATAGAACCAGTGGATCTGGAGAAAGCAGTGGACTTGTATCAGAAAGCAGCATCTGTTTTTGAGAATGAGGACCGGCTCAGACAGGCTGCAGAGCTGCTGGGAAAAGCCTCCAGACTTCTGGTGCGACTGCgcagGCTGGACGAGGCAGCTGTCTCTctgcagaaagagaaaaacatgtACAAGGAGATTGAGAATTACCCCACTTGCTTTAAGAAAACCATAGCACAAGTGCTGGTCCATCTCCATCGAGGCGACTTTGTAGCAGCGGataagtgtgtgaaagagagttACAGTCTTCCTGGGTTCAGCGGCAGCGAGGACTGTGCTGCAATGGAGACGTTACTGGCGGGTTACGACGAGCAAGACGAAGATGAGGTGTTTCGTGTGTGTAACTCACCTCTTCTCAAGTACATGGACAACGACTATGCAAAGCTGGCCATTTCTCTGAAAGTACCTGGAGGAggggggaagaagaagaaatctcCCAGCGCTCCACAGGAGGGCGCTCCAGGAGCGCCGGCTGCGGAGGAAGAGGACGAGTATGAAGGAGGACTGTGTTAAGTTAATCTGGGAAACGTCAGCACTTATGCACCAAGTGCGCACAGTATGTGCacaatagagagaaagagagtgacggagaagagaagagaagagagagtatATATTTCTCTATAGAGAATGTGTACGAGAGTAACAAAACATATAGGTGTATATATACTTTGTGACTTTCCCATACCATCCAAATCCTGATGACTGACTTTGTTTTCTGTGCAGAGTGTCTATACTCTTGAAGCTCACTGTAATGAGAAAGGAATACTTCAGCATTGTTAGCCCAATCTCTCAATCTGTAACATATGTATGATTACCACAAGCAAGAAATTTCCctgtaataagaaaaaaaaaaacagaaaacctgtttactcgaAATTCACTTAAAATGTAAGCATGTTAACATGAAATACTTATTTTTCTACAACGCTCAAGTTTTTCAGTCTAAAGTTTGTCAGTTAAGCTCTATTTTCTTACTTCCTCACAGAGATAAGACTACTTTTGCAGAGATAAAAATTTGTGTTCATGCTCTAATGACTTCTAAGCACAGAAAGGCtgcatttacagctttacagatacCACAAAACCTTTGAGAAAGCACAAGTAAACAGTaagtttttattgtattttaaaatgttggaaaatgacattttaaaaatgacataccAGCTTTGCTAAGACTGTTTCATGCTACgttctttatttttaaggtGTAACAGGTGTCGTTTTTGAATTTCAGCTATATTGTTGAGAATGTTTATTCCGTTATAAGTGAGTTTTCTGTAAATAGGGTTTCTAGGACAGGGAAAAGTAGAGAAATTTTGGTCTGAGGAAATATACAGTAGGTAGAgatcagaataaaaaatactggagtattcctttcaatcaatataaaaatataacaaaagctatttttatgttattagtTTATTTACCAAAATTTCTTTTATCACGTACATCTTATATTTACTATGTTACTTACTATGTGTTGTCATATGTACAGTATCCTGTATCATTGTGAATATCAAATTGTTGACGTGGTTTATGCAGGCATATGTAAATGACGTGGTGTACAGTAACTTATTCATTGTGTTCTTGAACTCGGCCAGTGCTaactgatgtctttttttgtctttgtctttttgtcaaCTATCCCTTTAATGTATAGCTATCAGAAAAAATATGACTGCGCACAAATGCTAGAAATGCGTAATATTTAATTAAGCAAGCTTCCCAGTGAGCTACCATTATTAATGACAAAtactttaaacatttctttccaATTATATTTAGAATGAACATGTAAATTTAAGCTTGATTTCCCATTAATGACGGGTCTTTTCAGTGACTCTGATTATTTGGTTCAGCTCAACAATATCAGTCGACTCccaaagtcttttttttccctaaactTTCTCTAGACAAAGTTTGCAATATTCTAAGCAGTGGTTGTGCCTCTTTGCTTAAATTGTTCTATGAAATCTTACTCTACCgtctaattaacaaaataacattagtCAGCAATACACTTTGCAATATCTATCTAATCTAATCAGCAAGGCACTACAAATATGCATTAACGACTACAGTAAGTGTTTGTGCATTCATGTTTTTTGTACCTGCTGTACCTGTCTGTGCTGCATTAAGAAGATTATTCTGATAAATTGATATGATATATATGCAAGTTGGCTCTCATGgttcacctaaaagagccgAGTCAAAGAGCTGACTCGTCTGTCAGTGACACGTTGTGATTTCCTACACTGTCAGAGTGCGAAGAGTACCAAATGTGTGTTAACATCTGTGCGCTGAAATGAATTTAGGAAACCTgggttaaaattaaagttaGGATCAGTTCTCTTGTCTGTATAGCTGCATTCATTAGGCAAAAGGCAAAAGGGGGTCTTTGATAAAATGCACAGTTTTAGAAATAGCTTTCAGgatgtcatttttgtgttttaaaatcctGACACAATGTTTTCTGTTTACAGCAAGACCAATGACAGTCGTGACGTGATGTTTAACACTGTTCAGCTGTTTAACACTGAAACCTGGCTGACTTTTAGGAGTAAAGCCGTGCTTTGAAATTCCTACAATGCATATCCAATAGTTATTATCCTTTCAGATCACCAAAAACATGAGGCTGTAGAATCATATAAAACAATCCTGATGTGAAGGGGGTTCTTCTGTGTCTAATACATTCCtctgatgatgctgatgataatgatgatgacgatTAGTGTATGCACAGCAATAAACACCTTTGTTGGTGCACAGTA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K21198 NAPG, SNAPG; gamma-soluble NSF attachment protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378748 lncRNA downstream 127673 13679496 ~ 13680102 (-) False LOC113533556
TU378702 lncRNA downstream 178318 13629247 ~ 13629457 (-) True G319766
TU378700 lncRNA downstream 192032 13612520 ~ 13615743 (-) True ccl25a
TU378684 lncRNA downstream 220244 13587091 ~ 13587531 (-) True G319754
TU378597 lncRNA downstream 378812 13428011 ~ 13428963 (-) True G319674
TU378866 lncRNA upstream 12394 13831855 ~ 13834798 (-) True G319906
TU378946 lncRNA upstream 121150 13940611 ~ 13945349 (-) True G319974
TU378947 lncRNA upstream 128847 13948308 ~ 13949723 (-) True G319975
TU378970 lncRNA upstream 190448 14009909 ~ 14010188 (-) False G319995
TU378973 lncRNA upstream 190448 14009909 ~ 14010528 (-) True G319995
XM_026925505.2 mRNA downstream 97078 13705300 ~ 13710697 (-) True LOC113533381
XM_026925917.2 mRNA downstream 104357 13693403 ~ 13703418 (-) False abhd8a
XM_026925918.2 mRNA downstream 104357 13693403 ~ 13703418 (-) False abhd8a
XM_034297789.1 mRNA downstream 104357 13693403 ~ 13703418 (-) True abhd8a
XM_034297791.1 mRNA downstream 104362 13693403 ~ 13703413 (-) False abhd8a
XM_026925900.2 mRNA upstream 90404 13909865 ~ 13931138 (-) True acss2l
XM_026925666.2 mRNA upstream 322742 14142203 ~ 14336583 (-) True LOC113533496
XM_026925764.2 mRNA upstream 582468 14401929 ~ 14404823 (-) True rxfp3.2a
XM_026925763.2 mRNA upstream 588991 14408452 ~ 14429093 (-) True creb3l3b
XM_034314772.1 mRNA upstream 851811 14671272 ~ 14705998 (-) False plpp2a
trnaw-cca_17 other downstream 2259336 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 3279525 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4834563 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4853665 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4922066 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 912451 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 1408011 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 1867797 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 1867797 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 2538113 16357574 ~ 16367004 (-) True G321462

Expression Profile