RNA id: XM_026925219.2


Basic Information

Item Value
RNA id XM_026925219.2
length 3871
RNA type mRNA
GC content 0.43
exon number 6
gene id rab12
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13820665 ~ 13834815 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAGTCGCAATGCGGGTTGGACAAACATGTAACGGGACGCGAAACGGGACGGAACCGGAAGTCGCGATGACGTAACGACAGTTCTCCTCTACCTAACACCAGACAACCGCGAAGAGGAAAAAACTTTGTCTAACTCGACGGAAGGGCCGCTAAAAAGTTGATTAAAGTGCTGCCACATGATGGCGGTCCAGTCCTAAACCGAGCCCGGGTCACAGATGTGGAGTTAGGGATGAATTCGAGGTGTGAAATCCAGCGGAGGCCCGGCGGCGGCGGCAGCGGCAGCGGCTTCAGCAGCAGCGGCGGCGGCTTCAGCGGCGGCGGCTTCAGCGGCAGCCCCGTCACCGGCTCCCCCGCTATGGGAGCGCAGTCGCGCCGCAGGAAGATGGCTCCCAGACCGGCGGATTATAAACTCCAGATCATCATCATCGGCTCCCGCGGTGTGGGAAAGACCAGCCTGATGGAGAGGTTCACTGATGACACCTTCTGTGAGGCTTGTAAATCTACCGTGGGTGtggattttaaaatcaaaacggTGGAGCTCAGAGGAAAGAAGATCAGGTTGCAGATCTGggacaCCGCTGGTCAGGAGAGATTCAACAGCATCACCTCAGCCTATTACCGAGGCGCTAAGGGCATCATCGTGGTGTATGATATCACCAAACAGGAAACCTTTGAAGACCTGCCCAAATGGATGAAAATGATCGACAAGTATGCATCAGAGGACGCTGAGCTCCTATTGGTTGGGAACAAGCTGGACTGTGAGGCCGACCGCGTCATTGCACGACAGCAGGCCGAGAGGTTTGCCTCACGGATATCAGGGATGCGATTCTGCGAGGCCAGCGCCAAGGACAACTTCAATGTGGATGAGATCTTTCTCAAGCTAGTGGATGATATTTTGAGCAAGATGCCTCTGGAAATGCCCAGTAGAGAACTCTCCAACAGCGTCCTTTCCCTTCAGCCCGAGCCTGAAGTGCCCCCAGAACTGCCGCCTCCTCGCATGCGCTGCTGCTGAGCCTCATCTCGGTCCTCCTGCTCCAGAAAAACCCCATCGTCTCCTATCAGCCCCTGCACTTCCAGCGACTGACCACCAGGGGTAGAGTGCCCCTGAATGCACTGAGGCCTTCCTACCTGCAGGGAGCTGTGGACTCCAGGGCATGTGCAGTGGGAGGGCAGTTCCAGGAGCAAAAACATTCAGAATAATTCACCACATTTAGACTTTGTCTCTGTACAATACCGCTGTAAGGTTTCCAACTACATGAAATCCAGACTGACCAACCGACTTCTCCTGCTCTGACCGTCTAGTTGCATACACACCTACAAATagcgcatcacacacacacacgcatatacatatataatatccCCAGTTCAGtataaggaggaaaaaaagatttctcaAGCTTCTTCAGTCTTTTTAAGAACTCTTCATCTCTGTAGCATCTCAGTGATCAAGTGCACGCTCATGACCTCAAGAGTGTACGTCTTGTATTGATTTAAAGCTGGGCCAGTCACGAGCAAGTCAGATCAGACTTCCCGATTCAAACAGCTCCTCTTTTCTCCTGAGTGATTTACCATCCAGTAAAGAGTTTCGTTTAGGAGTAGCATGCACGATCCCTCGCTACACTAgggttttctgctttttcagctacagcatttacatttacgtttacatttatggcactTGGCAGATGCCCTTGTCCAGAACGACTTACAGCAGCAGTCaaaccaaatgcaaataaatgtaattcaCTGAAGGAGAAAGGATAGGTGAACTTTAATTTGTGAATTCACAAGCCTCAGTCTTCGGTTGAAAGCAGTCGAAGGCAGCtcttcagtggaaaaaaaatggaggagctgcttattattaaggAGCAGTAAAACCAAGCTgctttcttactgttgcttggtgCACACCTTCAAAACAATTCCCGTCTCATCCACTGACATACACTAGCGCTTTTGTGGTACagttctgggttttttttccaccctctctctgcctgctaggattgtTCTAGCAAATATTGCAAATCTATAAATGTACCAGACACCAGAGTTTCCAATTCTGGTTATTTTCTGATAGGGGATGGTGGTCAGACTTACAGCCTCGGTCTATCAGTATTCCTGTTCGTCATGTTCTTGCACTACAATCCGCACTCGTAGCTGAGATTTTCCAGGGCAGGCTGCGTACAGAAAACTCTGAAGCACTAACGCATGATATAGTTCACTACCAGTGCCATTTCTGCGACTTTTGAATCAATAGAATTACACTAAATTACagagggtttgatagagggTGCTAAAAGAACTGCAACATTTATACCTAAAGGGctacatggaaaaaaaacaagctgcgTAGATGACATTAAATAGCGACAACAAGAACACAGCCCTTTGTTCCTGACTAAATGTCACGTAAATGGATATTAGGGGCTGTATTGTAAAAAGGACTGTTGaatgatgaaatgtaaatgCTGCACCTCGTTCTGGAGCATCTTATTTTGTTGTCACTGCAGATATTGCCATGggaaacacacatttacacaaatagCTATTATACTCGCGTCACGCCATGAGTCGGCGGTGTCACGTTGGTCTGCCAAGATGCTGTGGATTATTTGAATTGATTGTCTTCATAACACGGCTCAACATTTTGGTGTTCTAGTCTTCTAGGCCTCCTGTAATCACTAATTAACAAAAGGCACAATAATTTATGATGAGGACAAaaatggagctttttttttttttttttttctgagtgctCCTGATTTGATTTGAGTGCTCACAATCATGCACAGAGATTTCGAGGTGTTAATAtgtattcacattcacattcacattaaacGAAATACCCCATAACTGCATAAAGAACTAATGTGGCAGCTTTGGTTCTTATTCTGagaaacaggtgtgtgtttgtgtactgaACGTCTAACCCTCGTGTAGCAGTGCAGGAGTTTTCACACAGCTCCAAGCTcatgtatttcattttcatatttaatatgatttCTAACAACAGCTTTGTAAACTTTTATAAACCAACCTAAACTTTGCAGTATTTCTCATGGTTCCTGACATTTTTAGGGAATGTGTACTAACCTGAAGGttgtttgctatttttttttttttttggtgaaagtgCCAGATTTGTTGATGAAGGGCCTTTATTTATCACTAAGTGCTTTTTACTTGACTTATTATGTGCAAAATTGTTTTTACTTctgttttcctttgtttgtaTTCTGGATTCTTGAAAGACGATGAGTCAGATTTACTAAGCTTTTGCTAGAATTGTTTTCTGTCTCTATTCTCAAGTtcttttgcctgttttttttttcccaagagaAATTAGAAttgttgattttctttcttttcttggaTGTTTTAAGTTGAACTCTCCATTTTTGAAAGCTTTTTAAGTCaaattctcttctttttttatatgcGTCAGTATTGCTGCAGAAACACTAGTAATCACACTTGGTAAATCTGTCACATGGTTTTCTCTTGTGTTATTGAACATGAACATGTCATGGCCTATAAAAATTCTTCATCCCACTGTGAGGGTTTCTTTAGTGAAGTAGCAATAACTGCTGCCTTTACAAATGTCCATTTTGTATAGAGTAACCTTATGTTAATTTTCATCACCTATAGGACTATTTTAGAATTTATGATAcagaacttatttaaaaaaattcaataaaaaggggaaaaaagtgaaatggaCCCTCACTTAGATGTTGAGGTGAGGAAGAGTACTTTGTAATCTGAGTTTAGGTATTTGAAACCGTTTGgcatgtttaaacatttttgtgatatttataaCTCGTGGTGTTCTTGAACTAATGaagtgcaaataaaaaaaatatat

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07907 RAB12; Ras-related protein Rab-12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378685 lncRNA upstream 230349 13589599 ~ 13590316 (+) True G319755
TU378293 lncRNA upstream 309938 13505106 ~ 13510727 (+) True G319415
XR_004580330.1 lncRNA upstream 399282 13418555 ~ 13421383 (+) True LOC117599983
TU378255 lncRNA upstream 409058 13363825 ~ 13411607 (+) True G319382
TU378196 lncRNA upstream 514522 13239147 ~ 13306143 (+) True G319342
TU378818 lncRNA downstream 22150 13856965 ~ 13894441 (+) True G319867
XR_004576917.1 lncRNA downstream 69712 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA downstream 74048 13908863 ~ 13909635 (+) True G319886
XR_004576915.1 lncRNA downstream 76756 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA downstream 76756 13911571 ~ 13919146 (+) False LOC117595739
XM_026925211.2 mRNA upstream 13407 13720966 ~ 13807258 (+) True LOC113533233
XM_026925216.2 mRNA upstream 13407 13720966 ~ 13807258 (+) False LOC113533233
XM_026925213.2 mRNA upstream 13407 13720966 ~ 13807258 (+) False LOC113533233
XM_026925215.2 mRNA upstream 13407 13720966 ~ 13807258 (+) False LOC113533233
XM_026925212.2 mRNA upstream 13407 13720966 ~ 13807258 (+) False LOC113533233
XM_026925299.2 mRNA downstream 2618 13837433 ~ 13897914 (+) True LOC113533270
XM_026925301.2 mRNA downstream 2618 13837433 ~ 13897914 (+) False LOC113533270
XM_026925302.2 mRNA downstream 2618 13837433 ~ 13895741 (+) False LOC113533270
XM_026925273.2 mRNA downstream 97831 13932646 ~ 13947792 (+) True ndufv2
XM_034314762.1 mRNA downstream 114911 13949726 ~ 13985056 (+) True ankrd12
TU378000 other upstream 1047798 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2247768 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2271477 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 2272486 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 2351166 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 2618 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 2618 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 992450 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2034201 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2095137 15929952 ~ 15936768 (+) False gpx4b

Expression Profile