RNA id: XM_026925253.2


Basic Information

Item Value
RNA id XM_026925253.2
length 2089
RNA type mRNA
GC content 0.43
exon number 7
gene id mbd3a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15571964 ~ 15578078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGTGTGAGGAGCGGGTAGGGGGTCATTAGGTGAGAAGAGCAGCGTGTGAAATAAAGAAGGGACAATTCAACCATCATCACATCCCAAATTTCTTTTCGGTCAAGTTCTGCAAGCCCAACTCCGCTGGGAAGCATGGAGAGGAAAAGGTGGGAGTGCTCGGCTCTCCCAAATGGTTGGAAAAGGGAAGAAGTGACCAGAAAGTCGGGCTTGTCCGCGGGGAAAAGCGATGTCTATTATTTTAGTCCCACAGGAAAGAAGTTTCGGAGTAAACCCCAACTGGCCCGCTATCTTGGCAACTCCATGGACCTGAGCTCGTTCGACTTCCGTACTGGCAAAATGATTATGAGTAAACTGAACAAGAACAGACAACGCCTACGCTATGAGCACAGCAGTCAGAACAGGggTAAGCCTGATCTAAACACTTCTCTACCGGTGCGACAGACAGCGTCCATCTTCAAGCAGCCTGTTACAAAAGTCACAAACCACCCAAACAACAAAGTGAAGACAGACCCGCAAAAAGCTGTTGATCAGCCAAGACAGCTCTTCTGGGAGAAGAAGCTAAGTGGACTAAATGTGTATGACATAGCTGAGGAGTTGATGAAGAGTATGGATCTTCCCAAAGGCCTTCAAGGGGTCGGCCCAGGCTACTCGGATAAAACGCTCCTGTCTGCCATCGCCAGTGCCCTGCACACCAGCAGCGCCCCCATCACAGGCCAGCTATCTGCTGCTGTGGAGAAAAACCCCGGAGTCTGGCTCAACAGCACGCAGCCCCTCTGCAAGGCCTTTATGGTGACTGATGAGGACATCAGGAAACAGGAGGACCTGGTGTACAACGTGAGGAAGAGGCTGGAGGACGCTCTCATGGCTGACATGCTGGCTCAAGTAGAAGAGACCACTGGTGATACGAAGCCGGTGAAGGAGGAGACCAACGGCAGCGGTGAAATGGAGACAGTATAGCCACAATTGCAGTATTCTTCTCCTGCGCTGACCTACAGGATATTTACCAGGACATGAAAGCTCATGCTGTCTCTTGATGGAAAAGTAACTCTTTTGCTACTTTATGCAGTGACCCTCCAATTGAACTGTGAAACTTTGTGTTTTATGCAGGCAGTTTCTAGGAACTTTTTCacctttgtaattttttaaaaacattttggtttgttttaaatctgagTAAGCTGATGTCTTGCTGTACTCCAACTACATATGAGATGTTCTTTGTTCTTACACACGCACAGAGTGTGCATAAAGTGCTATCCgcaacacatcacatcacaagaGCTTTTTAATATACTATGCTAGACAGGAAGTTTATGCAACCCTAGGTTCTGATCTAGTGTATTGTCAAGCTAACAGTACGATTATGCTCATCAAGGGAGTTATAAACGGTTATAACAGTTAGGATGTAACATAAAATACAGGCATACAAATATAATCACTTCCTATCAATTAACTCTGAAATAGGTTGACATCACTAGAACTAATCTTATCATTATTGGTGCTTTTCTTTTCCGTTTTACAAATCAGCAGATTTGTCATTCTTCTCATCTGTGATTTTTAAGGGCTAACAGTCATACACTATACAGTAATATACAATAACTACAGTAATATAAGAAATGgttgctttaaattttcttaaacACTTAGTGTTAGGAACATATTCCCCTTAAAATGCAGAGCTCTTAGTAACCCAATGGCCAGACAGTGATGTATTAAAACTCTAAAATAAATCAGGAACAAAGGGCTCCAGGTGACGCATCAAGGCTGTTAATAAGGCAGTTCTTGTACATACTGCACTTACAGTTACTACCAGGAAGATGTGTAATTTCTAAGATCATTTTTGGTGTACAGTCCTCTCTGCTTTTCTGATTATGACCTAAAAAATGGTTCTTAACACAATTTAAAGGCATTGCTTTCCAGTTGACATCATTTCTTCTCAATTATCaggctttttattttctaaaattggGGCTAAATGTCGAACAGGTTGTTGGTGGACATTTGAATATTGCTGTGGAAAGAAAGTgtgtaaactaaaaaaaaaaaacgtttttatTTGGTGCTGCTCATTCAATAGGTCACTTGTTT

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380114 lncRNA upstream 877 15570694 ~ 15571089 (+) True G320977
TU380088 lncRNA upstream 1493 15566554 ~ 15570473 (+) True LOC113533167
TU380086 lncRNA upstream 25874 15543897 ~ 15546092 (+) True G320949
TU380071 lncRNA upstream 108734 15461854 ~ 15463232 (+) True G320935
TU379980 lncRNA upstream 230759 15340566 ~ 15341207 (+) True G320848
TU380120 lncRNA downstream 17946 15596024 ~ 15596226 (+) True G320981
TU380127 lncRNA downstream 35116 15613194 ~ 15613541 (+) True G320988
TU380130 lncRNA downstream 37919 15615997 ~ 15616218 (+) True G320991
TU380131 lncRNA downstream 38833 15616911 ~ 15617123 (+) True G320992
TU380138 lncRNA downstream 47724 15625802 ~ 15682209 (+) False slc25a42
XM_026925093.2 mRNA upstream 1488 15566560 ~ 15570478 (+) False LOC113533167
XM_026925493.2 mRNA upstream 8181 15534922 ~ 15563785 (+) True tcf3a
XM_026925495.2 mRNA upstream 8181 15534922 ~ 15563785 (+) False tcf3a
XM_026925494.2 mRNA upstream 8181 15534922 ~ 15563785 (+) False tcf3a
XM_026925701.2 mRNA upstream 50745 15514412 ~ 15521221 (+) True map2k2b
XM_026925249.2 mRNA downstream 1943 15580021 ~ 15586283 (+) True LOC113533252
XM_026925561.2 mRNA downstream 72543 15650621 ~ 15658676 (+) True LOC113533414
XM_026925001.2 mRNA downstream 81898 15659976 ~ 15666070 (+) True armc6
XM_026925405.2 mRNA downstream 89675 15667753 ~ 15682276 (+) True slc25a42
XM_034297740.1 mRNA downstream 220113 15798191 ~ 15842389 (+) True LOC113533481
TU379509 other upstream 743195 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1676301 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1676301 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2799099 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3999069 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 290938 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 351874 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 522455 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 533958 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 553257 16131335 ~ 16132364 (+) True G321257

Expression Profile