RNA id: XM_026925299.2


Basic Information

Item Value
RNA id XM_026925299.2
length 8342
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC113533270
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13837433 ~ 13897914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGGCTCACGGCACCGGGCGTCACACCGCAGCggctgcagatttttttttttttcccgtcaGATAGAAGACGATCAGCAGGAGAAACGGAGAGCGAGACGGCAGGAGGGCCCAGGAGATCGAAAGCAGAGGATGGGTTAAGTGGAAGCTGTCTGAAAAGGGAAGGACGGACACAGCCTATTGATCTCGCATTTCCGGGCTGCAGATGCAGTTGTGCCTCGCGCGCGTACCATTTGTTGCTGTTTGCTGAAAAGCAGGGATTAATGGGATTCTACTAAGAGATCTGTGtgcttatttctctctcttccctcgACGATGGATGAGCGGAACTGAATGAGAGTTGGGCATCAGTTAGAAGTGATGAGAGAGACGGGTGAAGAGTGCCGCGTTGCTGGTGCCGTGTGCGCGCTCGGTTCGGATCGCTCCGGGGTTGTTTTCCGCTCGCTGTTATGATGGAAAGCGCTGATGGCTCGAGCAGCGACGCCAAACTGCAAAGCCAGCCGCTGGAGAAGAAGAGGTTAAACCGTGCACCGTCTCCGGCCAGACCTTTCCTGAAGGATGGCCACTCCAGAGCTCTTAAATCCACCGCGCTTACACCAAAATCTCCTAAACTCaacaagcagcagcagcagcagcccgCGGCGTCCTTCACTCCACACAGCCGCGCTGTGAGACGCGCCGCGACCGGAGCGAAGGACAAACCGGCGCCGGTGAAAAGCGCCGCCAAATCCTCAGCGACTAAAAAGGCCTCAAAGGTCACGCAGGCGAAACCGGTCGGGAAAGCGGCGGACACCGTTAGTCGCCTTGCAAAAAGCGGAAAGGGGAAGCTGATACCTCTGTCGCGCGCTCCTCTGGCCCACGGTTCCGACTCGCCGGTGCGCGTTCCCACGGGGCGCCTTGCTCAGACAGACAGCAGCTCGGATCTGTCCGACTGTCCCTCCGAGCCGCTGTCCGACGAGCAGCGCCTCGCTCAGGCCGCCAGCAGCGATGCCGAGTCAGGAGCCGGATCGGGATCCAGTGAGCGCGGACACGCGGCTGCAGATGAAGCCGCGGACCCCGGGGCTGTGGGGGCCTCTGGCGCTGTGGGGGCCTCCGGTGGAGCGCGACTGCACGGCCAGAGAGCGGACATCACCGCGGCTCAGCCACAAGCTTCACCTGCGCGAGAGAAACCCAAACCGGAAAAACACACCGAGAGCGCGCAGCTCAAACCGGAGGCCGGCAAAGAGCTGGCAGAGGAGGATTTATTACGGGAAATTGAAGAGCTTCGCTCAGAAAACGACTACCTCAAGGATGAAGTGGATGAGCTGCGTGCTGAGATGGAGGAGATCAGGGACAGCTATCTGGAAGAGGAGGTGTATCAGCTGCAGGAGCTGCGCAGGGAGCTGGACCGCTCCAACAAGAACTGCCGCATCCTTCAATACCGGCTGCGCAAGGCAGAGCAGAAAAGCCTGCGAGTGGCCCAGACTGGCCATGTGGATGGAGAACTGCTCCGTAACCTAGAGCAGGACCTCAagGTTGCCAAAGACGTGTCGGTGCGTCTACACAATGAGCTGGAAAGCGTGGAGGACAAGCGCACACGAGCAGAGGACGAGAACGAGATGCTCAGGCAGAAGATCATTGAGGTGGAGATTTCCAAGCAGGCTCTGCACAATGAGCTGGAGAGGGCCAAAGAGATGGCAATAAGGAGAAGAGGGAGCCGGGAAACATTCAAGGACAAAAAATCTCTTTCTcagGAGGACAGTGCCGACCTGCGATGTCAGCTGCAGTTCTCTAAAGAAGAATCAGCCCTGATGCGTAAGAAGATGGCCAAGCTTGGCCGAGAGAAGGATGAGCTGGAGCAAGAGCTGCAGAAGTACAAGTCTGTGTACGGGGATGTGGACAGCCCCTTACCCCTGGCCGAGGCACCGGGTGGCGGGCCGCACAGCACACGTGAAGCCGAACTCCGGCTACGCCTCAAGCTTGTAGAGGAGGAGGCCAATATTTTGGGCCGGAAGATTGTGGAGCTTGAAGTGGAGAACCGAGGCTTGAGGGCTGAGAACGAGGACCTGCGCTGCCAGTATGAGCGTGATTGCTTTGGCCGTGAACCTTTCTCCAGTGTGCCTACATCTCCATTTGGTGCAGACGCTCCAGAGTCTGCCACTGAGCTGCGACGCCACTTGCAGTTTGTGGAGGAGGAGGCTGAGCTGCTACGACGCTCCATTTCCGAGATTGAGGATCGCAACAAGCAGCTGACCACCGAGCTCAATCGCTTCAAATTTGGACCTTCCGATGGTGAGGCCGAGGAGGTAGAGGGTGGAGGTGCTTTGGCCATGCTGAAGCCTGGAAACAGTGGTGCAAGCATGCCAATGAGTGGCACAGTGTCCCTGCAGGAGGAGCTAAAAGCCGCCCGGATGCAGATTAATGAACTGAGCGGGAAGGTGATGAAGCTGCAGTACGAGAACCGTGTACTGATCTCAAACATGCAACGCTGCGACCTGGCTGCACACCTGGGCCTTCATTCTGCAAGTCCTCGTGATAGCGATGCTGACAGCGATGCTGGCCGCAGGGATGCCGAGGAGGATGAGACAGGACGGCTCTTACTGCTCCACCCCAAGCGAGAGGGGCCAGTGGGTGGAGAAAGTGACTCTGAGGACCTGTTTGAGAAGACAGCTACCTCAGGTTTTGGGAGCGCTGGGAAGGGGTCAGATATGGGAGAGCTTGGAGGGGTGGAGCTCACAAAGCGGAGACGGGAGGATCGCGAGATGCTTGGTGGTATTAAACGGGAAGCTGAGCGGCTAGGAAAGACAGTGGAGAGGCTCATCTCTGACACAAACAGTCTGATCTGTGAGGGGCGTCTTGTTGTGACCGGGGCCGACTCTGTGGGGGAGGGTTCTGACTTCAGGGGTGACGGCGACTCAGCTGAACCCAAGCCTGACTCTCAGTCTCAGGTGCTAGATGCCATCAATGCTCGCATGCGGACATTCCGGGCAGAGCTTTATGCCTTCATGGAGAAAGTGGACCACCTGGGCGAAGGTCTGAGGGACCGCAGCGATGATCTTTCGCCAATGCCTAATCTAACTGAGTCGAGCAGCTTTTTGTCAACTGTCACGTCCATGTCCCGTGACTCGCCTATTGGAACTCTAGGAAGGGATCTGTCGACAGACTTTCAGTCCGGCCGGAGGCAGGAGTTCGAGTGGTCCCTAGGCCGGCGGAATGGCCCGGAGGCGCCTGCGCTCAGTAGATACGGCAGGCCCCACAGTGTCAGAGCCGAGCTCCGGGAGCCGAGCTTGTCTGAAGTGGGCACTCCTGCCAGGGAGGCACCGTTCTGTCTGGATCTCGAGAGGAGGATGAGAGCAGGACAGGAAGAGAGGGACAACCTACCATCCTCCATCACTCAGGAGGAGGAGTTGAGACATCTGGAGGCACGTCGAGGTCTGGAGCTGCAGGGTCTGCAGACGCACGAGCCCGCATGGCCACAGGAAAGAGCTCTACTGCAACAGGAAGTGCGCCTGTTCCGGCAGAATGCCATCATTGTCTACATGAAGCTGCGCTGGATCCTCATGCACTGGAGGCTCGGGCGCAGGACAGACGCAGCCGAGGAGGGAGCTGAGTATGAACGCTTGGAAAGCATCCCAGAGATTGGATTGGTGAGAGAACGAGCTGAGGAAGACACAGAGCGGGAGGACAAAGTGTGTCCCCAGGCCATGTGGGGAGACATCCCTGACCCTGGACCACTCTTACTGTCCCCGGATAAACTCCACTATCAGAAACAGgcaggTGACACTAGACGGGTTCTTCATGCCCTGCGTTCTCTGCTGGAGGAGTTGAGGGCGGAGCTACGGGAGGAGGCCCAGAGATGCTGTCAGCTGCAGCAGACGCTGGCCAATGAGAGAGCAGCATGGGAAATACAGCGTGCTGAGATGAGGAGCCGCATAGCACAGCTGGAGGAGTCGAGAGGAGCAGAGTTAGTAGGCGGAGCAGACTCCTTgtggcaggagagagagagggagcaggagAGGGAACGTGAGGAGCAGAAGAGGCTTCTGGCCGATAGCCACAGTGTGGCTCTGGAGCTGCGCTGGAAGCTACGGCACGGCGAGAGGCGATGGACCCGAGAGAGGAGTGAACTCCTCGAGAGCTTCGAGAGGGAGCGACAGGAGCGAGACCGCAACGTACAAGACCTCCACCGCAAGATGGAGAAGATGCAGCGGGAAATACCTCCCCGTCACTCTGAAGGAGGGACGCCGCGTGTCTTCTCCCCTCAGGACAGTCCCTGTAAGGCCCCCAGATCTCCACGCTCCCCTCGTGGAGCTCCATGTGCGGTGTCTCGTTCTCACTCTGACTCGGAGGCCACATTGGAAGAGAGAGCACGACCCAGCGAGAGCCTCTTCTTGGATGCTCTGTCTCTGGATCCACCAAACGAGGCCGAAGTTCCTCCTTCATCCAGACTGGAAAGTGAGAAGAGGTTCCCCTGTCTCAATGAAGCATTAAATGAAATCTCAGAGAGAGCGGATCCTGTACTCTATCCTGAGGAAGAGATGACCAGTGGTAGCCTCCTCAGGGCAAAATCAGTCTGCTCTATGAGTGATTTCCAGCGTTTGATGGACAGCTCCCCCTTCCTGCCAGACAAGAGCAAGTCAGGTGAATGTGGGCGGGATGAGGTGACTCCACCCCTATCTCCTGATGACCTCAAATATATTGAGGAGTTTAATAGCAAGGGCTGGGATCTCTCCAAATCCCCACTGTCTTCCTGCCCAATCCCAGGCCCTGTGCTGCCCCCACAGGTAGTGGAGGCATGGGTGGAACGGGCAGATACCCACAGACCTGTCCCTTCTTCATCAGATACATTTCAGCCAGCTGCATGGTACTTGACCACCAGTGCCACACTAACTACAAATACCACAAGCAGCCTGGAGCAATGTCAGCGTCTGGCTGCAAGAGGCTCCCCAGTGCCTGACCACTTTGGTGTGCGTGTCCTCCACAGCCCCACTAGGGCAGAGAGGTTAAACCCAGGACCATCAGATCAGGAGTATGCATTCTCCAGAGTGAGCAAGGAAAATGAAGGGGAGGACATTTTCGGAGGAAGGTGGCCATGTGAACTGAGACATTTGGAAGGTGGTGAGCATGCAACTCTATGCACTGCAATGGGTTACACATCCTCGCTTGAGCTAGAACTCTCTCGGAATCTCAGTGATGACATGAAGGAAGTGGCATTTTCTGTCCGGAATGCCATCCGCTCCAGCACAGCAACTGGTACTGCAGACCGTCAGATGCGTGATGCAGCATGCCAGACCAATGGCTCAATGACACGTGGCACGCAAACCACACAGGGTGTGAATGTGGCACTGCAGACACTCGCCAGCAGCCCTCGCCGCTGCCTCACTCCAGTTTCATCGCCTTCACGTAGCCTCAGGAAGGCACAATACTCACCTGCCACACAGGCCAAGTTTGAACGGTCATGTTGTTCACCAAAATACGGATCACCCAAGCTCCAGCGCAAGCCCTCGTGTACCAATACTGCACAAGGCAAATCTGAACCCCCTGCCACCTCATCGAGAGCTCCAACGCCAACTTCTCAGTCTCTGAAGGGCAACAGTGAGTCAGCATGGGCGCGTTCTACCACCACCCGAGATAGCCCTGTCCACACCACCATCAATGATGGCCTCTCCAGCCTCTTCAACATCATTGACCATACCCCAGTGACCTATGACCCAGCGCAGAAGTTCAACAAGTCACCCAGCCGCTCCAGGCCCGTTGAAAGTGGGTCTGCAGGTGCATCAGACCCTAAAGCAGGCAATGGTGGAGCACCACAGGACCTTGCAAGGCCGTCCAGGGGTCGTTCGCCCAGCCCTATCCAGCTCATAGTGGAATTACAGGGTGAGAAGAACCCAGAAACAATTAGCATCAGGCAGGACTTGTCAGCTCCACCAGGTTACACGATAGCAGAGAATGCAGCACGGATATTGAATAAGAAACTGTTGGAGCAGGGCTTCAGGGAGGAGAAGAAACAAGGTTCAGCCACGGCAGCACAGAGCAAAACAGGAGAAGTGGACAAACCTGGATGTATTGAGGACCTCCCCCGATCACCAGTAGCCCCGCCCCTGGACTCCTGTTTCCTTCGACCGGCACGTCCTGCCAATCGCCGCCCTCCCTCTCGCTGGGCTGCGCgctctccttcttcttcacCCAACTACAAAGACCACATAGAGAGGTTCCGCTTCCCCTCACCCATCAGACCTGCTCAAACGATCCCAGAGACAGAGGAGTCCAGTCAGGAACTACCTCAGCACCCAGCCTGAGGACATCCTGCACCAGCCAAGCCTGCTCactgtcctctcctctcctctcttctccttcttcttcttcttcttcttcttctttctatcCTCACCCCTCCTACAATTACCTCTAGACTTCTGGATTGTTCTCTCCATCTGTCCTGTtatcttctcctctcctccctgtcacattctcctccttttttcttccCATCCCCTCTActatctttccttccttcttttcctcttcttctcctcaCCTTTCCTGTCACCTTCAactactttttttcttctcatccCCTCTTCTGTCATTTCTTcctctcatcctcttcctctcctcaccTTTCCCCAcctctttctcttgcttttttctTCTCAGTCCCTCTTCTAttgtttcttcctctcttccttttcttctcctcacCTCCCTTGTTTTTATCCTTTCCTAattctcttcattttttttctctctctcatttttctgcTAATCTTATTTGGCTTTCTGTATTTGcttttctcctctcctttcttcctttttgtctcttctctcttaCTCATTATCCTCCCATCTTCTTAtatcctcctcttccttttcCCTGTCCTCTACCTCTTCCTTCTAccatctttcttttctcttcaccTTCTTTGTCTTGCTTCTCTCCTCctcattctttcatctttccTATCCATCccatcttcctcatcatcctttcatttttttcttacacataTCCTCTGCCTGTTCTCCTCATCCTTCTCATTCTGTCTTCACCTTCTCTTGTCCTTTCCTCTTACCATTCTCACACGTTCCTCTCCTTTTGTCCTGCTCATCTTCCgtccctcctcttctctcctcctttctcctcttctcctccgtCTCTTCTCCTTTAATCCAGCCTGACGACACAAGCACCACCAGAGTGTTGGACCATTCTAGCTCTTCTCACACCCTTCACATCCTCAACACAGGGGATGAGAAAAGGACGAAGTTCCTTGAGCACCAGCCGACAAGCAACAACCTTCTAGTACTTTCTGTGAGAATTCAAGGACCTCGAATGTACTGAAGCAAAACAACACAACCTACTCCATCAGAGGTGCCTAAACACACTTGATATCTCAATGGTCCCATATacgtgtgtctctgtgtatatGCAATACGTATGAATTTATATGTGTTGGTCagattaagatttttttcttatatccTGGGGAAAACCGGATAAATCGATTTTGTCTAAATGTTTACATGTCgttggttttttcttttttttgctcattcatTAAGGATATATATGTTATCTCCCATGTACATACTtgataaaattattttcttattttttagcGTGatagttttctttgtttttttctgcttgtgGCTTAAATTTATTTGAGTACGaagaaaagacattttatttattttatacaccgAAAAAAGAAAATGCGACAGAAGAACAGAAACCTGAGTCAgggaaacatgaaacatgatgtCAACAACACTGACGTATTTATTACTACAAATGTAAAGTTGAATGTTTAATGCACCACAAAGGGAAGGTAACTGGCAACTGATTATCCTTATGCATATTTTCCTGCATAATTTGATCTGCATGCCTTTTAAACCCTAGCACTTTAGTGCATGATATTAAATGCTGTTGTACCTTGTGCTATATCTCTATAATATAAGACAGCCCTATATacgaacacacactcacacacacacacacacgcacacacacacgcaaaccaCTGTCCATGGTCTGTACTTTTGTTGCCATCAAATTTACACAAGTTAGACCACTTTTTAAGTCGCTTATTGTACCTATTGCCCTGTCTTTGTAtagctgttattattatatttaaattctttctttaatttaaaggaCAAAAATGGGATTGTAAAAAATATGatgaatgttttaaattaagtCAGTGTCTAAAGTCTAATGATATAAAGTCTGTTTAATtggtaataaaaatgaatgtgtatTTACAGAAATTACCTGACAGTACCTGACTGCTTACaatcttctgttctgttctaatctgatttaaaaaaaaaaaaaaaagggaccaTCAGAGAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378685 lncRNA upstream 247117 13589599 ~ 13590316 (+) True G319755
TU378293 lncRNA upstream 326706 13505106 ~ 13510727 (+) True G319415
XR_004580330.1 lncRNA upstream 416050 13418555 ~ 13421383 (+) True LOC117599983
TU378255 lncRNA upstream 425826 13363825 ~ 13411607 (+) True G319382
TU378196 lncRNA upstream 531290 13239147 ~ 13306143 (+) True G319342
XR_004576917.1 lncRNA downstream 6613 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA downstream 10949 13908863 ~ 13909635 (+) True G319886
XR_004576915.1 lncRNA downstream 13657 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA downstream 13657 13911571 ~ 13919146 (+) False LOC117595739
TU378986 lncRNA downstream 120027 14017941 ~ 14018154 (+) True G320003
XM_026925219.2 mRNA upstream 2618 13820665 ~ 13834815 (+) True rab12
XM_026925216.2 mRNA upstream 30175 13720966 ~ 13807258 (+) False LOC113533233
XM_026925273.2 mRNA downstream 34732 13932646 ~ 13947792 (+) True ndufv2
XM_034314762.1 mRNA downstream 51812 13949726 ~ 13985056 (+) True ankrd12
XM_034314763.1 mRNA downstream 51812 13949726 ~ 13985056 (+) False ankrd12
XM_026925092.2 mRNA downstream 90689 13988603 ~ 14003700 (+) True twsg1a
XM_026925567.2 mRNA downstream 108443 14006357 ~ 14015371 (+) True rnf126
TU378000 other upstream 1064566 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2264536 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2288245 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 2289254 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 2367934 11467299 ~ 11469499 (+) True G318439
TU379509 other downstream 929351 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 1971102 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2032038 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 2202619 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 2214122 16112036 ~ 16120033 (+) False si:ch211-178n15.1

Expression Profile