RNA id: XM_026925321.2


Basic Information

Item Value
RNA id XM_026925321.2
length 6214
RNA type mRNA
GC content 0.44
exon number 15
gene id wdr47a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10347841 ~ 10392507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGGCCACACCCCTCTCCTCGGGTAGAAGCAAAGCACATCGGTGTAACACAACACTGCAATGTCCTGCGCTTGTATCgtgaacagtgttttttttccctagtttTTCTCAGCTGTTTTGGTATATGCTTATTCTTAGAGACGCCTAATCCGTAAAAGTTCGTTTTTCAACAATCCTACCGTGGGAATTTTGGGCGGTAGCTATTATTGGATTTTCAAGATTTACTCAGCGTTCtgaaatctgaccaatcagaaccgcCGAAAGAGATGTTCCCAGCATACGCGCATCTGATTGGTGGACGGCGCAGAGGAAGCGTTCGCCTGACAACCAGCGCTAGGGAGGTAACGGCACTGAGAGAGGAGAAACAACAAGAGAGATAAAGCCAGCGCccttataaaataattaaattaaacatccAAGAGGATTGTTGTGTGACAGCCCAATTTCTAAGAACCAGAAGAGACCGTCTGCAGTTTGCGTATATGTAGACTTTATCAGAAGTCTGCCACCATGACAGCTGAGGAGACCATCAACATAAAGGAGGTGGAGATCATTAAGGTGATTCTGGACTTCCTGAACTCACGGAAGCTGCACATCAGCATGCTGGCCCTGGAGAAGGAGAGTGGAGTAATCAATGGCCTCTACTCAGATGATATGCTCTTCCTCAGGCAGCTTATTCTAGATGGACAGTGGGATGAGGTGCTGCAGTTTATTCAGCCTCTGGAGTGCATGGAGAAGTTTGACAGGAAAAGATTCCGTTACATTGTACTTAAGCAGAAGTTTCTGGAAGCTCTCTGTGTAAATAATGCCATGTCAGCTGAGGATGAGCCACAGCATCTGGAACTAACCATGCAGGAAGCTGTAAAATGCCTCCATGCTTTGGAAGAGTTCTGTCCCTCCAAAGAAGACTACAGCAAACTCTGCCTTCTCCTCACTCTTCCTCGTCTTACCAACCATGCTGAATTTAGGGATTGGAACCCAAGTACAGCACGCGTACGCTGCTTTGAGGAAGCGTGTACCATGGTGGCTGAGTTCATCCCGGCTGACCGCAAGTTGAGTGAGGCAGGTTTCCGGGCCGGTGCAGACCGCCTGTTTCAGCTACTGGTCAAGGGTGTGCTGTATGAGTGCTGTGTTGAGTTCTGCCAGAGCAAGGCCACAGGCGAGGAGATCAGTGAGGCCGAGGTGCTGCTGGGCATTGACGTGCTCTGCGGCAATGGCTGCGACGAGCCTGACCTCAGTCTTCTGTCATGGCTACGGAATCTGTCACCTAGTGTCTTTTCGTGTGCCTTCGAGCAGAAGGTGCTCAATGTGCATGTGGACCGGGTGGTTAAACCAGTACGAGCGGCCCATGCTGACCTGCTCACACCGCTCGTCAGCAAACTCTCACCATGCCCTGCCTCTCCTTTGCGCCGCCCACAGTCAGCTGACACCTACATGTCACGCTCGCTCAATCCAGTGCTGGATGGCCTTGCCTATGGCCTGTCTGGCCtagagagaagaggagggacCAGAGCCAGTGAGGTGGGGAAAGCATCACCCATGTCACATTCATTTGCCAACTTCCAATACCCTGGGGGGCAGAACCTGAGCCGGAGTTTGATGATGGAGGAGTCACAATGCCAGAGCATCTTTGAGGAGTCACCTGAGAGCTCCAGAACTGAAACTCCCTCAGATAAAATGATGAGCTTAAGTGGTTCCCAGAACTCTCGCCCAGTCTCTGCTCCGGGTCAGGATGCCCCACCAACCACCTCTACAGAGAAGAATGAGTTGCGTGACTCAATGGAACAGTATCAGGAGTACTATAGGCAGCGCTTACGTGTACAGCAGCACCTGGAACAGAAGCAGCAACAGAGGCAGTTATACCAGCAGATGCTGCTGGAGGGTGGAGTTCAGCAGCAGGAGACTTCACCCACTGCCAAGCACAACCTCACTGAGACGTTTCTCAACAGatcaATTCAGAAGCTGGAGGAGCTGAATGTTGGGATGGATGATCTGGGTGAGGAGGTTCAggctctctctctgcagtgtaatggtggaggaggaggaggaggagatgcaGGAATAACTTCAGGGGGTACCACAGACACAACACTTCATCAAGATGGGGCAGGGCTTAGCAGCAGCACCCCTCAGAGAAACAGTGGACAAGCAACTGTTCCACCTCCCACTGAGTCCCCTGTGCTACCAAGTGTTCAGATGGAGAGAGGAGGGCAGAGTGACACCAGCATGACACGCACTAAAGAAACAGAGGGAGATAAGTCCAAGACAAAGTTTGTAGCAGTGAGTACTTTGGAGGATACACAAGCTGTGCGTGCTGTGGCCTTCCACCCATCAGGGGCATTCTACGCTGTGGGCTCCAACTCCAAAACCCTGCGGGTCTGCGCATACCCTGACACACTCGAcaccagTGGTGCATCTAAACCCCCAGTGGTGCGCTTTAAGAGAAATAAGCATCATAAAGGTTCTATTTACTGTGTGGCGTGGAGCCCCTGTGGGCAGCTTCTGGCCACTGGCTCCAACGACAAATACGTCAAAGTGCTGCCTTTCAACACTGAATCCTGCAATGCCACTGGTCCTGATCTGGAGTTCAGTATGCATGATGGTACTATTCGAGACCTGGCCTTCATGGAAGGGCCTGAGAGTGGAGGATCCATCTTAATCAGTGCTGGAGCAGGAGACTGCAACATCTATACTACTGACTGCCAGAGAGGACAGGGGCTTCATGCTCTTAGCggacacacagGCCACATACTGTCACTGTACACATGGGGAGGCTGGATGATTGCATCTGGTTCACAGGATAAGACTGTGCGTTTCTGGGACCTACGTGTTCCCAGCTGTGTGAGAGTCGTAGGGACGGCTTTCCACGGGTCAGGTAGCCCAGTAGCCTCAGTGGCAGTGGATCCCAGCGGGCGTCTGCTAGCCACAGGCCAGGAGGACAGTGCCTGTATGCTGTATGACATCAGAGGGGGGAGGATGGTGCAGACATATCGACCTCACTTGAGTGATGTGCGTTCAGTACGGTTCTCCCCTGGAGCTCACTACTTGCTCACTGGCTCCTATGACACAAAGGTTATCACCACAGACCTACAAGgagaccTGACGAAGCAGCTGCCATTGACTACAGTAGGACAGCACAGTGATAAAGTAATCCAGTGCAGGTGGCACCCGCAGcacctctccttcctctcctcatCTGCTGATCGCACAGTCACCCTCTGGACACACAACACATAGAGCCATCTCTCACCACACATCTCACTCTACTGACAAAACTCCCCAGTTGGATGAAACTGtaaatactctgtgtgtgtgcgtgtgtgtgcatgtgtgtgtctgagtttattatttctatattctttttctctttgctttGTGACAGCCTCTCTTCCTTGCCTCTTCTTTATCAATGTTGCGTAAATAGTAGCAGTTAAATTGTTTTCACACGAGCTACATGGTTCCAAGTGATTTCAGCATTACCTATCAGCAAAAAAAGatactgttttattaattaaaaacagaacaaacaagTAAATAGGTCAAAGTAGCACATGTACAGAGCACTCCCTAATTAAATGAGTGAAACTACATGATttctaaaatgctaaaaagaTCTCTTTTTGCTGAAAGATGCATACATAACATGTTTTATGATGTTATATAGGCAATGAAGTCAGCAAATCTCATTATCACATTACACAAACAGCTGGAGTTGGACATACTACAACTTGTCAGATTTCTCACAGTTCCAGGAGTTTATGTTCCCTTTCAATGGTGCACTATTGCCTGTATTCATCGTCCAATTACATAACTGACCGTATCACTGTAGTATTGTAAACTTCTTTAagttttttaattgtaaaaagCAAACCTGATTAAAAAAGACAGAGGCTTTTTTACACCTGTGTGAAAATAGAAATGTATACTTTTTGAAGTGTACATTAAGTATACTTCAGTCATGGTCTTGATCTTCTTCTATCACACAGtcataatgttagctaacttgcTAGAGTCACATATCTACTGCTGGACACATAACATTAGCTGAGCTAATTATGTTGTTGGCAACATCGTTGTTAAATAATGATGTGCCAGTTCTGTTAGGCATGCACACCTCTGTTTTTCCACCCACACTTCTAGAAAGAAATCTGTTTGTCTCCAATCAAGCTGGATTTCAAAGCTGGAGATCTGACTCATCCCACCAGATCATCTGTGCTGTCACTTGGCTCCAGCCAAACCCTTGATCTGAAAATCTGGGGAAAATGGGAGATAAAATTCTGTAGTGCATATCAAGCTTTAGGCAAACTAGCATTAAAAAGTTAATCAATGATTCTCACTCTAGAAGGGTCAGAATTCTTCCAatattttcagacattttatgATTGGAAAAGGTACACGAGTCTTGTTGTGTGAGATGGTCAGTGGACTGATACAGGCAACAGCCAATGACAGAGCAAGGAggggaaagaaggaaaatggtGAAGAGATGTATGACCAATGCACCACAGAGATGGAGGATAAACTTTGTGAATCAAACTTTGAGAACTCTGAAAATGATGTCCCAATTGATGTCCTAGTTTTCATCCACAGTTCTCAGTTTTGTTTCTTATACTTATCTGTGTAAAAAGGCACAAACAAGTTAACTAAGATGCAGTATGTTtagctccatttttttttctccatgagATCCGTAGTGCTGAGGAGATGTTTAGTCTATGAATGCTGTgaagaaatgtgtgtaatacCCCATGGCCAATTTCTAATTGTCAGGCTTTTATAAGTCATGCAGTATATGCACATCATGAAGGAAGATCAGACTATTGGCCAGATCTTAATGTTGGCCCAATTAAGTCATTTGTTAAACATAAAAGTAACACATTCTGAAGTGTGCAACACATGCCTCAGATACCTGAACCTCGTGAATAGATGTTTCTGTGTGCTGTGTATTTCGTGTGGTGCCTTGGTTCATGGGTCATTTATAAAGCTTTATGATACACTCAGCCATTCCAACCAACCAGGTATTAAGAAATAACTGGGATTAGGGTCAATtccattcagttcagttcagcatATCCAATATTCACCTGCTGTAATTTGAACTAACCTCTTCATTCCATACGGTTATCgtttatttattctttgtgAAATGTCCTTATGGTCTGGAAAGCTCTTCATGAACAAAACTAAATCAgtcatataaaataatttaatacattcattccttcatcttcagtaactactttgtCATGATCAGGGTGGCGGTGGAGCCCATCCCTGGAACACATTggagcatgaggcaggaatctataataataataataataataataataataataataggtggATTGTTGATTTGCCTCTAGGTGGGAATGAGAGTgtggatagactctggatccacctcaACCCTCATAATAATGCTGCGGTGGTATGATGGTGCAGcatgtagtgtttgtgtttctccGTGTGTTTCCTGCATCATAGTCCCGGGTGCGTTCCCGAGTGTTCCCTAGATAGGCTTCAGATATATTGCATACCTGAGCAGGATAAATTGGCTAGGATAACTGGCACTGAACAGATTGAATTGACAcccattttaaaagaaacagtgGTATAAAGTGCTCATAAATAGTCACCATCCTCTCATTGATGATCCTCTCACACTCAGTgttttgctgctgtgtgtgttaaatagaAAACGCattcaggaaaaagaaaatgtacagtttGTGATCAAAGGTGTTAAAAAGAATTCGGTCTATGTGCAAGTAGACTGTCATGCATTATACTATTACTGAATTACCTTCTGTATGAATGTAAATCCTGTGTTTTTCCCTATTGCTTGAAATGCAGTGCTTTTGCCTGAAAGACAACATCTGTGTGCATCTCTTGCCTATAAAATCACTGTTTTTCACTACTCTGTTAAAATGTTGAACTAAGATGATGACAAATTTATGCCATTTTAAATTTAGCCAAAAACATTGATGTTatcctgatttatttattattttgtcagaTCAAAactaacatattaacatatttattttagcatttctgTTAGAGCCTTGATCTAATTTGTCTTTGATAGCACCCTATTAATgcaagtatttatttaatttttttttcaaattcggGAACTAAtgtcattaatattttatgcaAAAACAAGTGTCTGCTGCTGTAGAGTCAAAATAAAGACTTCTTTGTCACTTTC

Function

GO: NA

KEGG:

id description
K24746 WDR47; WD repeat-containing protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376510 lncRNA downstream 521 10344638 ~ 10347320 (-) True G317918
TU376489 lncRNA downstream 20291 10318011 ~ 10327550 (-) True G317897
TU376427 lncRNA downstream 45033 10234012 ~ 10302808 (-) True G317849
TU376405 lncRNA downstream 161798 10181696 ~ 10186043 (-) True G317827
TU376404 lncRNA downstream 168537 10175691 ~ 10179304 (-) True G317826
TU376530 lncRNA upstream 104213 10496720 ~ 10496953 (-) True G317937
TU376534 lncRNA upstream 125964 10518471 ~ 10520263 (-) True G317941
TU376540 lncRNA upstream 128106 10520613 ~ 10522428 (-) True G317943
TU376550 lncRNA upstream 133758 10526265 ~ 10526474 (-) True G317953
TU376576 lncRNA upstream 169860 10562367 ~ 10562528 (-) True G317977
XM_034314574.1 mRNA downstream 405529 9935223 ~ 9942312 (-) True LOC117599941
XM_026925427.2 mRNA downstream 453074 9874783 ~ 9894767 (-) True prpf38b
XM_034314774.1 mRNA downstream 453715 9874783 ~ 9894126 (-) False prpf38b
XM_034314861.1 mRNA downstream 559188 9715945 ~ 9788653 (-) False LOC113533399
XM_026924978.2 mRNA upstream 1376 10393883 ~ 10460626 (-) False camsap2b
XM_026924977.2 mRNA upstream 1376 10393883 ~ 10460626 (-) True camsap2b
XM_026924979.2 mRNA upstream 1376 10393883 ~ 10460625 (-) False camsap2b
XM_026925864.2 mRNA upstream 134843 10527350 ~ 10528279 (-) True ccl20a.3
XM_026925752.2 mRNA upstream 177678 10570185 ~ 10584166 (-) True LOC113533548
TU375761 other downstream 1374629 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 1393731 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 1462132 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 1859212 8477223 ~ 8488629 (-) False vcpip1
XR_004576923.1 other downstream 2489227 7858496 ~ 7858614 (-) True LOC117595746
TU376553 other upstream 134775 10527282 ~ 10528250 (-) False ccl20a.3
trnaw-cca_17 other upstream 1155861 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 4339405 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4834965 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 5294751 15687258 ~ 15717495 (-) False LOC113533563

Expression Profile