RNA id: XM_026925322.2


Basic Information

Item Value
RNA id XM_026925322.2
length 1382
RNA type mRNA
GC content 0.53
exon number 10
gene id sh3gl1a
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13217490 ~ 13241937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGAATACGGATAGGCGAAAAAGATAGAGCCACCGTGTGGGTTCTGTGAAGGTGTTGGTGCAGGAAGAAGTGTTGctggagttgtgtgtgtttgtaacaaCCAAAGAGACAGGAACGAATTTCACATTTTCCCTGGTGTATAGAGTGACAAGCCGACGCAAAGATGTCTGTCGCTGGCTTGAAGAAGCAGTTTTATAAAGCGAGTCAGATGGTGAGTGAGAAAGTAGGAGGAGCGGAAGGCACTAAGCTGGATGAAGACTTCAAGGACCTGGAGAGGAAGGCTGATATCACCAGTAAGGCCATTGTGGAAGTGTTGTCCAGAACGTCAGAGTATCTGCAGCCCAACCCAGCATCTCGGGCCAAACTGTCCATGCTGAACACTATGTCTAAGATTCGGGGGCAGGTGAAGAGTACCGGATATCCACAGGCAGAGGGAGTTTTGGGGGAGTGCATGGCCAGATACGGCCGCGAGATGGGGGAGGACACCAACTTcgGTGGTGCTCTTGTTGAGATGGGGGAGTCTATGAGGAGGCTGGCTGAAGTCAAGGATTCCCTGGATATTGACGTGAAGCAGAACTTCATCGACCCTTTCCAGACCATCGTAGACAAGGATCTCAGGGACATCCAGCATCAGCTAAAGAAGGTGGAGGGCCGGAGGCTAGATTATGACTACAAGAAGAAACGGCAGGGAAAGATTCCAGATGAGGAGCTGCGCGCTTCTCTGGAGAAGTTCCACGAGGCCAAAGAGGGTGCAGAGATCAGCATGCACAATCTCTTAGAAACTGATgtggaacAGGTGAGCCAGCTCTCCGCTCTGGTAGAGTCTCAGCTGCAGTATCACAAACAGGCGGTGCAGGTGCTGGAAGAACTGTCCGAGAAAATGAGAGACAGACTGAACAATGCCCAGGCTCAGCCACGTCAGAAGCGAATGCCCAAGCCAATGCCCAGCTTTGACTCGGACCCGGAGTCTTCTAACGGGAGTTTCAGCCCAACATCTGTTCCCTCGAGCTATAACGCAGCGCCTGCTCTACCCACCCGAACCTCTGTACGCCAGAAACGGCAATCACTGGACCAGCCTTGCTGTAAAGCCCTGTATGACTTTGAGCCAGAGAACGATGGAGAGCTGGGTTTCCGTGAGGGCGACATCATCACACTGACCAGCCAGATCGATGAGAACTGGTACGAGGGCACGCTGCGTGGCCAAGCCGGCTACTTCCCCTGCAACTACGTCGAGGTGGTGGTACCACTTCCTCACTGAAGCCCACTGACTGGAGAAACGAGGGACggcagggaagagagagagcgagagagagatatagagttGCAGTGGTGACAAGATGGAGGGTTAAATAAAAAGCAGCAAAGGCTGGAGACTTGGAAC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K11247 SH3GL; endophilin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378125 lncRNA upstream 59761 13156524 ~ 13157729 (+) True G319275
TU378124 lncRNA upstream 63058 13153131 ~ 13154432 (+) False sema6ba
TU378185 lncRNA upstream 68628 13148652 ~ 13148862 (+) True G319334
TU378181 lncRNA upstream 77008 13140274 ~ 13140482 (+) True G319330
TU378169 lncRNA upstream 114882 13102347 ~ 13102608 (+) True G319318
TU378255 lncRNA downstream 121888 13363825 ~ 13411607 (+) True G319382
XR_004580330.1 lncRNA downstream 176618 13418555 ~ 13421383 (+) True LOC117599983
TU378293 lncRNA downstream 263169 13505106 ~ 13510727 (+) True G319415
TU378685 lncRNA downstream 347662 13589599 ~ 13590316 (+) True G319755
TU378818 lncRNA downstream 615028 13856965 ~ 13894441 (+) True G319867
XM_026925873.2 mRNA upstream 1433 13185931 ~ 13216057 (+) True rorcb
XM_034297752.1 mRNA upstream 62963 13021142 ~ 13154527 (+) True sema6ba
XM_026925325.2 mRNA downstream 11673 13253610 ~ 13265447 (+) True stap2a
XM_026925327.2 mRNA downstream 11768 13253705 ~ 13265447 (+) False stap2a
XM_034314561.1 mRNA downstream 25817 13267754 ~ 13285252 (+) True sema4e
XM_026925890.2 mRNA downstream 57571 13299508 ~ 13305437 (+) False prkab2
XM_026925889.2 mRNA downstream 57576 13299513 ~ 13305437 (+) True prkab2
TU378000 other upstream 444623 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1644593 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1668302 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1669311 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1747991 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 595496 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 595496 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1585328 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2627079 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2688015 15929952 ~ 15936768 (+) False gpx4b

Expression Profile