RNA id: XM_026925335.2


Basic Information

Item Value
RNA id XM_026925335.2
length 7542
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC113533285
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12063866 ~ 12363593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacgcacacacacacacacacacgcgcacacgcacccacccacccacacacacacacacacacactcgcgcgcgCGCTCCTTTACTACGGCTGGCGATGTGACGCGCCACGCTCGCCTTGTGGAATAGCGGAGGATCCAGCGCGTGAAGAAGCGGAGGAGTGCGGCTTTGCTTTTTTCCACGGAAAGGGATGAAGCGACAGCGGAGGACGCCGATGACCATGACTGTGGATTTTCTCACGTTTTTGTGCGCCGTCGCGGCTGTTTCAGGGATGGAAGaGACGATCTTGGACACACGGACTGCCACAGCTGAGCTCGGCTGGACAGCGTACCCTGCATCagggTGGGAGGAGGTGAGCGGCTATGACGAGAACCTAAACACCATTCGCACGTACCAAGTGTGCAACGTGTTTGAGTCAAGCCAAAACAACTGGTTAGTGACTACGTTTGTACGGCGTCGTGCCGCCCAGCGTGTCTACGTGGAGATGCGCTTCACAGTACGCGACTGCAGCAGCATCCCACGTGTTCCCGGCTCCTGCAAAGAGACATTCAACCTGTACTACTACGAGAGCGACCAGGTGATTGCCACCAAGGGGGCCACATTCTGGACAGAGGCGCCCTACCTCAAGGTGGACACCATTGCTGCAGACGAGAGCTTCTCTCAGGTGGACTTCGGTGGGCGCCTCATGAAGGTCAACACAGAGGTGCGCAGCTTTGGGCCGCTCTCCAAAAACGGCTTCTACTTGGCCTTCCAAGACTACGGAGCGTGCATGTCACTGCTGTCGGTGCGTGTCTTCTACAAGAAGTGCCCGAGCGTTGTGCAGAACTTTGCAGTCTTCCCTGAGACTACAACCGGTGCTGAGAGCACGTCGCTGGTGATTGCTCGTGGGTCCTGCATCCCAAACTCAGAGGAAGCTGACGTGCCCATCAAACTGTACTGCAACGGCGATGGCGAGTGGATGGTGCCCATCGGTGGCTGCACCTGTAAGTCTGGCTTTGAGCCTGACAACGGCAATATCTGCAGAGCATGTCCTCCTGGTACTTTTAAGTCCATGCAGGGCACAGGGCTGTGTCTGCAATGTCCTCCCAACAGCAGGTCCACATCTGAGGCCTCCACCATTTGTGTGTGCAGGAACGGCTACTACAGAGCAGATGGAGACCTGCCAGACATGCCCTGCACTAGTGTCCCGTCTGGTCCACGGAACGTCATGTCTGCTGTGAACGAGACGTCGGTGACCCTGGAGTGGCACGCGCCTCGTGAGACCGGAGGCCGAAGAGACGTCGTCTACAACATCGTGTGTAAGAAGTGCACTGCAGAGCGGCGCTCATGCTCGCACTGCGACGACAGCGTGGAGTTTGCGCCGCGCCAGCTGGGCCTCACCGATACCCGTGTGTTCATCAGCAACCTGTGggcacacacactatacacgtTTGAGATCCAGGCCGTCAATGGTGTGACCAACAAAAGCCCGTACCCGGCGCAGCATGTCTCTGTTGACATCACCACTAATCAGGCTGctccatCCATggttcccataatgcaccagGTCAGCTCCACCATGAGGAGCATCACACTATCATGGCCACAGCCAGAACAACCCAATGGCATCATACTGGACTATGAGCTGCGTTATTATGAGAAGGATCTAATGGAGGTTAACTCGACAGTACTGAGGACGCAGACAAACACAGTTCGCGTAGACGGACTCAGGCCCGGCACAGTCTATGTGGTGCAGGTTCGAGCCAGAACAGTGGCTGGATTCGGCAAATACAGCAATAAGATGTGCTTCCAAACTCTCACAGATGAAGACTATAAGTCAGAGTTGAGAGAGCAGTTGCCACTCATTGCTGGCTCAGCGGCGGCTGGTGTGGTCTTCATCGTGTCCCTGGTGGCCATTTCTATAGTCTGCAGCAGgaAACGAGCTTACAGTAAGGAGGCAGTGTACAGTGACAAGCTTCAGCACTACAGTACAGGCAGGGGCTCACCAGGGATGAAGATCTACATCGATCCATTCACCTATGAGGATCCCAATGAGGCTGTGCGTGAATTCGCCAAGGAGATTGACGTCTCTACTGTCAAAATCGAGGAAGTCATTGGAGCAGGTGAATTTGGAGAGGTATATAAGGGGCGCCTGAAGTTGCCGGGTAAGCGGGAGATCTACGTGGCCATCAAGACCCTCAAGGCAGGCTATTCTGAGAAGCAGAGACGGGATTTCCTGTCTGAGGCATCAATCATGGGCCAGTTTGATCACCCCAACATCATCCGTTTAGAGGGCGTTGTCACCAAAAGTCGGCCAGTCATGATCGTCACGGAGTTCATGGAGAATGGAGCATTGGACTCTTTTCTCAGGCAAAATGATGGCCAGTTCACGGTGATCCAACTGGTGGGAATGATGCGAGGCATCGCGGCAGGCATGAAGTACCTGTCTGAGATGAACTACGTTCACCGGGACCTGGCCGCTCGCAACATCCTGGTCAACAGCAACCTGGTGTGTAAAGTGTCCGACTTCGGCTTGTCACGCTACTTGCAAGAGGACACATCTGACCCCACCTACACCAGCTCACTGGGAGGGAAGATCCCTGTGCGGTGGACGTCTCCAGAAGCTATCGCGTACAGGAAGTTCACATCAGCGAGTGACGTGTGGAGCTACGGCATCGTCATGTGGGAAGTGATGTCATTTGGCGAGCGGCCGTACTGGGACATGTCTAACCAAGATGTGATTAATGCCATAGAACAAGACTACAGGCTTCCTGCACCGATGGACTGCCCCACTGCTCTGCACCAGCTCATGTTGGACTGCTGGCAGAAAGACCGCAACGCTCGGCCACGTTTTACCGACATTGTCAACACACTCGACAAACTCATCCGCAACCCGACGAGCCTAAAGGCTGTTGCTAGCATGCCGTCCATtcCGTCTCAGCCGCTATTGGACAGGTCTCTCCCTGACTTCAACACCTTCAGCTCAGTGGAGGACTGGCTGTCTGCTATTAAGATGTCTCAGTATAGAGACAATTTTCTCAACTCTGGCTTCACTTCCCTGCAACTTGTCGCCCAGATTACTTCAGAAGACTTGCTGAGGATAGGCGTGACTCTGGCCGGCCACCAGAAGAAGATCCTGAGCAATGTGCAGACCATGCAGATGAGCCAGTGCCAGTCTCCCACAGCACTGGCATGACTACAGCAGGCGCCAGTCGACGGGCCAGGCATCCTGCTCAGCGTGCAGGAGCGGGTGAGCACTGGCACGTCGGAGCGCGCCAGGGTTGAGACGGTCATTCTGATCTGATAAAAAGACGCGCATGTGCTGAAACACACTCCAGATCAGTGTGTCTGTAAAGAGTAAACAAAACAGGaatccctgtctgtctgtccatctatctgtctctggCTGTACATACAGGATATCCATCTGGCcattaataaagcaaaaacGGTCAATCCATTTCTAATACCAAGGACATATCTActattttttcttcactttcagTTTGCTCATGGTTCATCATGctgattcttttctttttcttaactATTTTAAACTGTGAGCGCAACTGAGGATCTActaccaagaaaaaaaaaacacctcctgATGCACTTCTTTTTTTGGTtgctgttatatatttattttcttttctattgaAACGAAATACAGCTATACCTCGTAGTCCTCTGCTTCCCAGCATCACTACCTGACAGCCGGCTTTGCCAAAGGACGTCTTGAACGGCCTGCGTGtatatctttaaataaatatgaatatatctCTGGAGTAAACCTTCATATTGAAGGTGCTTTGTAAAAGATACATATGTGCATACTTTTCTCCTGCTTGGGTTTTGGGCACAGTGTGCATTGCGTGGATAATACTGGACTCATGGTAGACTCCAAAGAAAAGGAATTTAATGTAGTCAAGCTggggaaatgaaatgaagccCAAAAGGACAATCTTCAAAGATTTGTGGCTGTCGCGGAGCAAAACACTGTAGAAATGTGATTTAATTGTGTATAAACAACTTGTAGGGTAAAGCAAATGAAACCTTCAGGCTACCAAACTGGACGATGTATATTGTAGAAGTTTCCATGCTGATGAACACTTAACTGTACagtttttctccttcttcttcttcttcttcttcttcttctgttcatgttctttttcttcctttctttatgATCCTCTCTGGGTTTCTCTTGTTCGTTTGTGTTGGAGTGTATGGTGGAGCTGTCTAAggacagctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgctaccTAAACTCTCTGGTACGTCCATGTTAGTGTTATTGCACTGTTAAATATGCTGTACTGCTGTTCGTCTTCAAAACAGGGTCTTCAAAATTCGCTAATCAAGTGTTTACATGTTCAATGAACTGATGAGCATATAGTCAGCTAGTGCTAGGATGATCAgcatgagtctctctctctcacacacacatatacacacacaaacacacgtttAATGTGTGGGGCATGAAGCACCATATGTGTTCTGATAACATTGTTGAACCTAGTGCACAAGGTCCCTGACATCAGTCTGGTGCAAAGAGTGACTGGTCATCTGTGGCTAGGCTGTACATCTGCACGAACCTTTGCTAACAGATGCCTGGTGCCCTATCAATGAACACATTCTCCTGAAGTGATAAttgagatcacacacacacacacacacacacacatacacacaggcttTGGGCTATGTCCTGCTCTCGCTTCTTTGGTTGCCACGGTGAAAGTAGCACGACCTTGCATACTCTTAATGGGGATGGGGAAGATGGGATGGGGATGCTGGCCTGAGATGAAGAAGGAAGCATTATTCTAGTTTAGAAGTTAATGAGCAAAAGATTCAGGGTGAGAGTATGTTTGCTGAAAGCAaatggtctctctctctgtctctctctcttcctccctctgaCTCTGCCCTTATTTTAGGCCTTGCTCCATTCTCTTCTCCTGTGAACAATATTAGCAGTGGTTAGGGTTATGAAAACACAGAGAGGGCTTTCACAGACCAGTGTGTTAGCAATCAATGGATGTGTATTTAGAGAtcaccttttcttcttcttcttcctctttcagTTCTAGTGCTGAAAAACAGGGCAGGAATGCCATTGTTGTACTTCTGATGGTCAGGGACTTGTAATAGGCTGCTAtgggaaagtgagagaaagatggctggatggatggatggacgcatggatggatggatggacggttGGATGGACCgatagatggatggacggatggacagacagatggatgaatggacaaATTGGCAAAGGTTTCCAgggaagaactcaagtgacctgggcagagccctgacctcaaccccactgaacacctttgggataaattaGAAGGCTGACTACACCCCACGCCTTCTTGCCTGACCTCAGcacccaacctcactaatgcttttgagATGAATGGGCCATTCTTCAGAGCCACACACTAAAATCTATtggaagccttcccagaagagtggattATAActctttcccagaagagtggaagttattataacaacaaaatgggaactaaatctggaatgggatgttcaaaaaatgcacatgggtgtgatggtcaggtgtctacaaacattTTACTATATAGTGTAGGGTGAATGGATGGACAAATTGATGGATGGACAAATTGATGGAtggacaaatggatggatggatggatagatggatagatggatgtatggatagatggatggatggatggatggatggatagatggatgtatggatagatggatggatgggtgggtggatgggtggatgagtgaaaggaagaaagaatgtATAGATGGGCAAATGGATGGGTAaatttaccattttttttaaagtctagATTACTCGCTGGCTGGCTGGCtagctggatggatggatggatagatgaacaCATTGATGGttggatagatgaatggatggatgggtgaaaggaagaaaggatggTTGGTAGATTGGGTAGATGGATGGACGACTTGGATGGATGGCTGGCTGGATGGATGTGTTGATGGATGGTTGGGTGTTTAGATGGAAGGATGAACAAATGGTTGTATAGATGGTCCGTCGTTGGATGGATGCAGTAGACGAGTGGATCGATGTACCAATAAAGAAAGGGttcaataaaaacacaagctAGTCTGATATGTTCTTAATTATGTCGCATACAATACATTATCTACATCAAATGTTGAATATTTGATTGAGTCTATAAAAGATTTTTTACAATATAAACCTTCATATAAATCATGAAGGAGCCACAAACAATTTAAACCAGGTCACTGTATCTTGTGGTAATCTGCAAAGCAATCACTGGTGTTCTGATATTAGTATTAACTgtgtaatacaataataatgatcagATGTGTAAACGTAAAGGGGCATTCTGGCATAAAACTGGTGTTTAACATATTTGTTCCTATTATTTAATACTCTAATTTTCTAGATAGCAAGAATAGCAGAGTAGTACATCAGTGGGTTTTCTATTGCTGCCACATTGTATTTATTGCTATTATTGTTCTTTCTCTACACTACCTAGCATGCATTACTGAAATGCATTATATAGTTTATGGAAACTCTAGCAGAATGTAGCACAAAAGGCAAGATTCATTTGAAGATTTCATTTCTAGTAAATATGTATGGAGTGGCGAAAGCTAAACACTATAAGAgagatgattttaatttttgcCAGAATGTCCCTTTAGCTCTTTCTCTACAATCCATGgacatgaaagtgtgtgtttcccTGTTCTTTTCATATCTTGCTCCAATCCGTTTCTCCTTattctaccaaaaaaaaaaaaacacacacacacaaagaaaaaagctGGCAATGCTGAGTTTCACCTCGAGGAGATTTAGCCTCATGTCCTGACAATGGATTCATGTCCAAGACAATGTGGATGTGTGTTACACTGGGATTTGCTGcttttattctaattttatCACTCTTTGCTTGGAGTGTAGACATACAAACACTCACTTCTGTGCAATTTTGGCAGAATTATACCagtgcttcttttttagcaTGCCAACAGCAGAGCAAGGCATGTCACGTCTGTATGTTTCCCTGCACGGCTCACACATGCGGGCAAATGCGGGAGAATAGATTTAGTGTCTGGCTGTAAggctatgtgtgtgtaggtgtatgaGTGCATGGGATTAAAACGACTGTCTGGAACCCAGACAGTGTCCTTGTACACATATACTGTAagggagagagtgaaagagacacacacacacagtgtgtgagagaaagagacatagagagagagagagagagagagagagagagaggatggacaCTAGAAGCATGGCATGGACACTCGTTCCCAcgtttatgtatatatagattTAAAGGAAATGCCCTTCATTTCCTGCTTTGTGTCTCTGTATAGTTAAAACCTGTTTATTGTGATGAGTATGTCAGAGTTTGTAACTGTAACTTTCTGAGAAATATTGTACTAAAAACACACTCAATAAAGATCTTGGTAGTCCAGAACTCACACAATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377454 lncRNA downstream 262004 11801647 ~ 11801862 (-) True G318660
TU377417 lncRNA downstream 357989 11619876 ~ 11705877 (-) False wu:fb63a08
TU377432 lncRNA downstream 370532 11689489 ~ 11693334 (-) True G318639
XR_004580347.1 lncRNA downstream 431945 11629570 ~ 11631921 (-) True LOC117599995
XR_004580348.1 lncRNA downstream 431954 11629570 ~ 11631912 (-) False LOC117599995
TU377875 lncRNA upstream 220272 12583865 ~ 12584089 (-) True G319059
TU377987 lncRNA upstream 270300 12633893 ~ 12648886 (-) True G319163
TU378012 lncRNA upstream 391175 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA upstream 400661 12764254 ~ 12765991 (-) True G319182
TU378022 lncRNA upstream 409056 12772649 ~ 12796934 (-) True G319186
XM_034297713.1 mRNA downstream 358031 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297716.1 mRNA downstream 358031 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925718.2 mRNA downstream 358031 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297715.1 mRNA downstream 358031 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297714.1 mRNA downstream 358031 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925363.2 mRNA upstream 73110 12436703 ~ 12523017 (-) True gpc1b
XM_026925637.2 mRNA upstream 271464 12635057 ~ 12722764 (-) False gpc5c
XM_026925636.2 mRNA upstream 271464 12635057 ~ 12722763 (-) True gpc5c
XM_034297706.1 mRNA upstream 361341 12724934 ~ 12726494 (-) True LOC117595730
XM_034297734.1 mRNA upstream 389057 12752650 ~ 12754252 (-) True LOC113533469
trnaw-cca_17 other downstream 515427 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 1535616 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3090654 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3109756 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3178157 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 2368319 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2863879 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 3323665 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 3323665 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3993981 16357574 ~ 16367004 (-) True G321462

Expression Profile