RNA id: XM_026925341.2


Basic Information

Item Value
RNA id XM_026925341.2
length 3837
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC113533290
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16509561 ~ 16526583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCGAGCTCGCCACGCGCGTGCGGCTCGACATCGGGTCGGACAAGGGACGGAGAGGAAGAGCTTTAACGCAGCGTGTTTGTCTTAGTGCTCGTGCTGATTACCTTTTAGTGCACAATAGTTCTGGCATTCTTTTACgcaatgtatttttgtattttctgaaAAAGAACTAAATCATATCTACAAACGCTTTTGGTATATTTTAATAGATACGACGTTAACATCGACATTGAATTGAAATAGAATTGAAGTTGTACCGATTGTCAGGAATCGCATCGTCCGGACTGTCTGGATctcaaagttaaaaaataaaaaataaaaaaatcctaggagatcaCGCGAGAGGAATATTCACGTGGACCAGACacatagtgatttttttttttttgctcgaGCTCGAATGGAGCAGCACGCAGAAGCGCGAGGCTGCACCGGTCACGGATCGCGATCCCGGTGTTCCGAGCTCCTGCACGAGCACTGCATGCATTTATCCATCCAGTCGACGACGGGCACCCGCTTCGAGCTGTCTCTCCCCGCGGAGGAGACGGTGGAGGGGCTGAAGAGGAGGCTTTCACAAAAGCTCCGAGTGTCCAAAGACAGGCTCGCGCTTCTGCACAAAGACACGAGGCTAAGCTCAGGGCGGCTCCAGGACTTTGGGGTTACGGACGGGAGCAAGTTGACCCTCGTGCCCTCGGTGGAGGCAGGATTAATGTCTCAGGTCTCCAAACCAGAGCAGTCCATCATGCAAGCGCTGGAGAGTCTGACAGAAACTCAGGTTGGTGACTTCCTATCAGGTCGCTCTCCGCTGACACTTGCCCTTCGTGTAGGGGATCACATGATGTTTGTGCAGCTGCAACTGGCCGCGCAAAACTCGGGTGTCCAACAGTGCACCACTAGGGGACCTTTGAGCACAACCAGGACTGCCCAGCACAACACAGTGCCCTGTGGGGGCAACAGTGAGCACCCTCATACTCCAACCACTGCCCACAACAACCAGAGGGCATCAGCTGGACACCACGCCCACCACGCCCACCACACCCACCATGCTCACCATGCTCACCTGTCTCCCCCCTCCAGTCCTACACTTTCCCCAGGATCTGTCCATTATCCTCACCTGGCCACAGGTGCCTGTAGCCCTGCCCCCAGAGCAACCACGCCTTTCCAGCAGGGTGAGTGTGGGAATTCAAGTGGAAGTGGAAGCACCAGCTCATGGCCAAGTCGTAAACCGGGTGCGGTGATAGAGAGCTTCGTGAACCACGCTCCTGGGGTTTTCTCTGGAACCTTCTCAGGCACCCTTCACCCGAACTGTCAGGACAGCAGTGGGCGTCCACGCCGTGACATCAGCACCATCCTGCAGATCCTCAATGATCTACTGAGTGCCACACGCCACTACCAGGGCACACCTCCTGCCCTGGCCCAGCTCCGCTGCCATACTCAGACACCTGCGTCTCCCCGAGAGACGCCGCCCACCTCGCCATGCCCGCCTCCCTCACCCACTGTCATGGAGCTTCCATCAGCACCTGTGTCACCATTATCATCCTCACCTACCTCAGACAGACTGGCACTGAGCCACAACCGCATCAGCAAACCAATGGGCGAACCCTCCAGGCAGACGGAGAACAGGGCGACACGCTGTAAGGTGGAGCGTTTGCAGTTGTTGCTGCAGCAGAGGAGGCTCCGCAGGCGGGCGCGGAGAGAGCCCCGGGCTCCCTATCACTGGCTGAGCGAGCGCAAAGCCACCCGAAGCCACAGCAACAGCAGCCTGAGCAGTGACGGCTCCATCGACCTGGACTACGACGAGGCGCTCTGGAAGAACGACGTCCAGACCGACATCAGCTCTGAGTTCGTCGTGGCCTGAATGAGCAGCCCAAAGAAAGAAGGATGAGAGAATGAAAAGATTACGAGTGGCTGAAAGAGAAAGGATTTACTTTACGTAATGATGTGTAATGCTGGAATTTTTAGCGTTTGTTCAATATGAAACACAAAATAGCATTGGGAAGAGAACTCGTGTTCTACAGCATGAAGCGAACCAAGAGAGTGTCTTTCTGTACTCTAGATACACAAGATGTTCAAAGATTCTGAGACTTTTTCACCCGGTTTGCTCAATTGACTGTCTTAACATGGTGGTGGTTTGAGTTGCTGTTGTTACAAAAATGCGTCATGTAGCATTATGAAGCAAGAaattcaggtgtttctctcTGGTTTATTACATTTTGCACACTTCTTGACCTGTGAGCATTAAggtttcctttctttgtttttgataCTCAGCTTGGTTGAAACTCAGCTCAAGTGAACTCAAATACAAATTAACTCAAATCCAGAAAGCATTTATTACAGACACATTCTTTGCTTGTTCACACTTGTATATGTAACTGTATCTACTGGTTAAAGTATTAAGGTAATATCCCAGTGCCTCTGTTTACCACTTAGTGTATTGAAGCATCAAATCTGGAacacatctggatttttttttttttttttctgctacaaAGGATGACGTGCGAAAGAGAGGAGTCTTGTCTGGTCATCCATCTCATTATAACTAGGACCTGATTCTGCAGAAATGTACAATTCTGCATGCTTCTTGAACATACAAGGAACTATTAAGTGGGGTCATTCACATATTGGCTCTGTAGCACCGTTTTACAAACTGATTTGAAGAGAAAATGACTTATGTAGTATTTTAGGTTTATGTCACCTGCTGACCCACATATGCCCATCAAGATGAAGAGTAACGTCGGACATCTTTTCCACTATGGACCATTGCTGTCTCAACATTTGTATGATTGAGAAAACTGGAAATGAGGCATGATAACATATACATGGATGGACCTTGTGTACAGTGGCCTTactgatctttaaaaaaaataataaaaaatagcgAAATGTGCAGGCACTGGAAACTCTGGATCCTTGATGtgtattgtgattttttttttctttttaaattaaggaCACACCATTAGAGCATTAGTGAAAGGCTCCTGTGCCTCAACAACGTGCCTgagacaaaaggaaaaaagacgTTTCTTTCCTCGTCTGATAAGTCCCTCAGCCTTCTCAGCTGAGAAACAGAGATAAAAGAGTACttgctctgtgttttgtttttggcttttttttttttcgatcaTGATGTAATGTCTGTCCTGTGTATCTCTTGTGCATCGTTCGTCTTGTGTACATCCTGTCTTTCATTCTTGAAACCAGAATctccataaatatatatagatatatataatacatataaaaagaGGAACAGgtccaaataaacaaatatcacTCTGTAAACATACTCATAATATGTCACAATGTGGACGTCTTCTGTTTCAGCACCAAGTTCCTAAAATATTGTTACCTGGATGCATGGGATatgatataatttatttaaggTTGAATTGAATATATGAGTAGTTCATAAGGAAATATACGCATTTGGTTGGGATGTTGTTTTTAAAGTTGacgctggtgtttttttttgttttgtttttgttttttgtcaacGCTGCATTTTTTCGTTGCCTGTACTGTCTTGTGATCTCACAGGTGAGGAGCCTCTGCTTGTGTAGCACATTTTTATAactgttttaatttataaagcCGATCTTGCAACTGTGAAGAAACGTTATCTGATGTTTTTCTTGTCacctcttttgtgtgtgtttgtttttctctttatttccgtttttgtctcttttgtcAAAAATGAAACCTGGTATTGTAAAAGAGGGAAACAACTAAAAcaactgattttctttgttcatAAGCaatacatttcagtgtggcttgctgtagacatttttttctttttaggtaataaattttaattttaatgcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380675 lncRNA downstream 53438 16394208 ~ 16456123 (-) True G321468
TU380677 lncRNA downstream 108034 16399300 ~ 16401527 (-) True G321470
XR_004576910.1 lncRNA downstream 114022 16394753 ~ 16395539 (-) True LOC117595731
TU380672 lncRNA downstream 134218 16374510 ~ 16375343 (-) True G321465
TU380548 lncRNA downstream 286247 16187976 ~ 16223314 (-) True G321354
TU380718 lncRNA upstream 19656 16546239 ~ 16547477 (-) False LOC113533305
XR_003403406.2 lncRNA upstream 19671 16546254 ~ 16547501 (-) True LOC113533305
TU380732 lncRNA upstream 58864 16585447 ~ 16587763 (-) False stk11
TU380749 lncRNA upstream 82233 16608816 ~ 16609557 (-) True G321536
TU380904 lncRNA upstream 216323 16742906 ~ 16744015 (-) True G321652
XM_026925539.2 mRNA downstream 35873 16470099 ~ 16473688 (-) False cirbpa
XM_026925538.2 mRNA downstream 35873 16470099 ~ 16473688 (-) True cirbpa
XM_026925803.2 mRNA downstream 117281 16385427 ~ 16392280 (-) True cib3
XM_034297792.1 mRNA downstream 166724 16336003 ~ 16342837 (-) True LOC113533484
XM_026925546.2 mRNA downstream 182604 16308558 ~ 16326957 (-) True ap1m1
XM_034314744.1 mRNA upstream 38125 16564708 ~ 16587816 (-) False stk11
XM_034314743.1 mRNA upstream 38125 16564708 ~ 16587813 (-) True stk11
XM_026925103.2 mRNA upstream 67561 16594144 ~ 16601594 (-) True LOC113533174
XM_026925894.2 mRNA upstream 78815 16605398 ~ 16610978 (-) True LOC113533630
XM_026925105.2 mRNA upstream 109537 16636120 ~ 16638282 (-) True foxl2b
TU380669 other downstream 142557 16357574 ~ 16367004 (-) True G321462
TU380217 other downstream 785205 15687258 ~ 15724356 (-) False LOC113533563
TU380215 other downstream 792066 15687258 ~ 15717495 (-) False LOC113533563
TU379938 other downstream 1280305 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 1764074 14731912 ~ 14745487 (-) False theg
XR_003403441.1 other upstream 93050 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 447105 16973688 ~ 16973770 (-) False trnal-uaa_3
trnal-uaa_4 other upstream 554438 17081021 ~ 17081103 (-) True trnal-uaa_4
TU381420 other upstream 973482 17500065 ~ 17500832 (-) True G322080
TU381602 other upstream 1328746 17855329 ~ 17872108 (-) False LOC113546399

Expression Profile