RNA id: XM_026925363.2


Basic Information

Item Value
RNA id XM_026925363.2
length 5263
RNA type mRNA
GC content 0.44
exon number 9
gene id gpc1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12436703 ~ 12523017 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCTGTGGCACCGGAAGCTGGAAGCTAAATCCGCTCTTTTTGGCTTTCGGCTCATACAGAAGAGGTTTTGATGTAACGTCCTCTAGAGGCGCGCGAGCTCGATGCCCCCTGCTTTCCCGGCTGTCGGCGCGTTGTCTAAGCATTTGTCCGGCCCGAGAGCGCAGGAGAAGCAGCACACTGACTCTGGACCGGACCACCAGCGAATCAGCTTCATTATTCAGTTTCCACTTTAATACATTATTGAAGACCTCTCTAAATAAACATACTGGAGCTGGTGCGCAAGTGTAGTCAATTGACAGGCGCGGAGTAAAGGCAATTGCTCACCAGACCGGCAGCGTAGgcgttttttccccccagtgcGTCTCAGTTTTGCAACAAAAAGCAGCACTGGAAAGAGAACTTGAACGCCAGTTTGAACGCGTGGACATCTTCAGCAGCAACGGATCAGCATTTACACTAAGCGCGTCCAGGTCATTGGGTTTCAGTCGGATCTGAAGTGCGGGATGGATGTGCGCTTAGCGCTCGTGCTGTGCGTCCTGGCCGGAGCGGTGAGCGCAGAGAGCGCCACCGGGAAATCTCGGAGCTGCACGGCTTTCCGAGACTTCTACAGCTCCAAGGGCTTCAGCATGAGCGGCGTTCCGCAGGCGCAGATCTCCGgtGAGCACTTGCGAGTGTGTCCACAAGGCTACACCTGCTGTACGAGCCAGATAGAGGATAATCTGTCCAACCTGAGCAGGAAAGAATTTGAGGACCAGGTGAAAGAATCTGGGCACACTTTACAGGTCTCACTCAACAGCCAGTACAAAAGCTTTGATGGTTATTTCCAGGAGCTGCTGAACCGTTCTGAAGCTCATCTCCGTGCCTCATTGCAGTCCACCTTCGGTTCGCTCTTCTCCCAGAATGTCCGGGTGTTCCAGGATCTGTATTCAGATCTGCGGCACTACTACCGTGGCTCCAAACTGAACCTGGAGGAGGCGCTGAACGACTTCTGGGCGCGTCTGCTGGAGAGGTTGGTGCGAGGACTGAATGGGCGCTACAGCATGGGCGAAGATTATCTGGATTGTGTGGCGAAGCAGGCAGAGACGCTGCATCCCTTCGGAGAAAAAGTACGAGAGTTCAAGCTCAAGGTCACACGCACTTTTGTGGCTGCCAGATCCTTTGTTCAGGGGCTCGTCGTTGCTGGGGAGGTGGTGCGAAAAGTTTCTCAGGTTCCTCTGAGCGTGGAGTGTGTACGTGCTCTGATGAAGCAGACATACTGTCCTCACTGCAGAGAAATGGCCTGGGCTAAGCCATGCTCCCCGTACTGCAGAAACGTGATGAAGGGCTGTCTCGCCAATCAGGCAGACCTGGACACTGAGTGGAAAAACCTTGCAGatgctaTGCTACAGGTGGCTGATCGGCTGAGCAGACTCCCCACTGTGGATGCAACCATTTTGTCTCTGCCTAAGTGCATTGCTGATGCCATCATTTACATGCAGGACAACCTGAACACTTTCAACAGCAAGgTGTTTCAGGCATGTGGTACACCTCCAGAGAACCCCAGCCCGGAGGAGCCGAAAAAGAGAGGCAACCCCGTAGGAGAAGACTTCAGCAGCACTTCAGCAGCAAGCGTGGAAAAACTGTTATCAGATGTATCCCACAAGATAAGGAACATGATGCAATACTGGATTCAGTTGCCCAATAAGCTGTGTGTGGACCGAGAGGCAAAAAGCAGTGACGAGAACAAATGCTGGAATGGAATGGCCGTAGATAGGTATCTCCCAGAGGTGATTGGAGACGGACTGGCCAACCAGATCAACAACCCTGAAGTGGAGATTGACATCACTAAACCAGACATGATTATACGACAACAGATCATGCAGCTCAAAATCATGACGAGCCGAATGAAGAACGCCATCGATGGCAACGACGTGGACTTCCAGGATGCCAgtgATGACATCAGTGGCTCTGGAAGTGGAATGTGTAATGATGATCAGTGTTTCCACAACCAGCAAATTATGGTTCGCAGTACACGCAGACCGAGAATCTATCCCAACCTTCCTGGGAACAAGAATGAGGTGAAAGCTGACGGAAGACGGATCCTCCCTTGCTCCGCCCTTTACCTGCTCTCATTGGCCACAGTGCTGCTTAGGCGATAATTGTtgtttcagccaatcaggactCAGTATGGGATGGGGATGGACTGAGGAGGGGCGGGGGCAGTTACGTTGCCAAAAATAATATCATAACAAGCATATGAAATTTACAAACAATagcaaaatgtggaaatgaaCAGTCCTCTTTGTCACTATACAGAATATACTTTAATTTCTGTTCTATATGTCTGTTTTGAATACCTGCACTCCTTCTCTGGTGTGAGGGAAATATCACGCATTTAAGAACTGAGAAGTGATTCTCTAGGTATGGATTTAACTACATATTTGAAGTTCTGTGCCATAAGAGCTGCGAAAATCTCttatttgtgctcattcaaaAATTAGGATTTtagataatttatttattgctacCGAATCCCCTCCAATCCTGAAATCCAGTGTATTTAAATGTCTGGAAATCATCATATAGGTCACATCACCTGTTTATCAAAAACAGTAAGGAGAGAAGTTTTAGACTTCCACAATAATAACCGTGGGCCTGCAATAGGTTATCTTTAAACCATTGTTCTCATAGACGGCCATctcttttttcacacacactttcttgtgcttttaataatcattgttatttttttccaattgCAGCTTTAAGGCTCGGGCTTGCATAAAACACTACCTATATGTACCACAGTTATGAATAAAGCGCATAAATGATAACACATGCATAATTTCGGCAAGGCAAAGAGCAATATTTTGGCTTTGAAGTTCACACACCAGCAgaataaaaaagacaatattTTCAAGAAGTTGTATCACTTCACCGAAGCTGTATGTGATTCTATATGATAGTGTCTTGATTTAATGAAATTTCCCCATCATCTCTgagcttattttttttattttttttttttcagaaggcATTTGTAAGGAGATTGAAACACTGCACTATAGTGTACTTCAGTAAGACAGCAATGTGCAGGTTTCAGTAATGAACTACATGATAGAATCCCCTCCCAAATTTCCCTCTGTACTTCTCTTTTAGAAAATGTTCACAGTGCTTATGTGTTGCTCTCACTGCAACGCTAgtgatccctaatgagcatgTCTATGAATGGCGCTCTGTAGACAGGGATAGAAAAATACAGTGTTGAGAAGGAGGTTGAGCATTTTGGATGGTGTTTGTGGACAGGTAGATATTtggaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtcttggTGATAGATATTCAGATGCATGTGTTAGGGATGTCACCAAATATGAAttcattatttggaatgaactgaTTTGAATCTGTTCAAAACAGGTACAAATACTGATATAAATAGTAGGCGcacaattgtgttttttttttttctctttctgccaGAAATATTCACAGAGCATCAGGTCCATACTAGAGGTTTTTGTCGGTATTGAGATCCTGTATAGTCATACAAGAGGAAGTTTTTACTTTTCTGCCGGAGTGAGCGAGTGGTCAGATGTGAAGATTGAGAGACAAATAAAGAGTGCGGGAACGTGCAGCACTGAACAATGCACGTGTAACAGCCTTACTAACAGTGTTGCAGTGGTATCAGGCTACTACAAAAGAACCATTAGAAccaaatttgttagaaaatatcacaaacagatataaacaaaaataataactgcacaagCAGGTTTAAACAGTCGCTCTAGTTAAGACTAATTATGAACTCAAGTTTGAggctgtatctgtgtgtttgtggacaCAGATAtttggacgtgtgtgtgtgggcgagTCTTTGACTGCTTGGGCATGTGGACATGAGGGTCCTTggaggtgcgtgtgtgtgtgtatgtgtatgtttgtctaTGTCGGTAGTAGATattcgtgtgtatgtgtgatagaGAGTGTAAATCTGAATGCTCATCTTTCGGTGCCTGTGACAGAACACCCCTGTTCTGGAAATGAGTAATAATGGCGCAGGGTGATAACATCACTACAGAACATGCAGTGGACTCGATTGCGTTCAGATTGCACAATGCAGTTAATGCAGCCTATAGTGATGATGTGCTCAAAACCACTGCATGCTGGGACATCCCTTTTCTCCTCCACTAGTCATCTCTTGTCCTAGCAGACACATTCCAAAACaatgtgtaaagaaaaaaaaatacaaaaaaaaaatgtaaatttatttgcACAACTTTGTCAATCTCTGTAAATCTCATTTCAGTTCTCCATTCCTTTCCTGATAGCTTTTTTGAAATACTGCACTTTTTGTGACATATATGTTGCCTCTTAAGTAACACAGCAGCCACCGCACGACTTGATTGACGATCTGTAGCTGAGCATCAGTGATAAAGCGGCTGATCGATTGGGATCATAGGTTGAAAAATGTGTATTACCAATTGGATCAGAAAATTGGATAGAAGCAAAGACAGAATCTTATCTGATAGCATCGTGGATAATAGGGTCCAATATAGAAGGAGAACATAATAATTAGTTTGTTGGTTAAAGGTAGGTGTATGCAGAACAGTGAATTTGTGGTCAGGTTTCAGTGCTACCTTAACCCTCATTTATACATGGCGTTAGACCAGTATGTACATATTCAGCCAATAAACCACTAAAATTATTACACAACATCCATTTAACTGGGACGATCTTCTGGGATAGTTCTTCATCATGTGTAAAGGACTGAAGGAGACAGTAGCACACACTGGGACACATGGCAGAATGGTGCCATGGATATTGGGTACTGGAAAATGTATACACTTTTTCAAAAAGCAGGAGTACATAATTGCATGTCATGTATTAAGAACAAAGTCCATTGAAGGGTTCAGCCGATTCTGATCACAAGCCCAGGAATGCCTGTTCCACCAACTTGGGCCCTAAATAACCACTTGTAGTGTTAAATATGGCTGACATTggtgaaatgaaatttaaacaagaaaaaaatgcaaatatctACAAAATGTTCTGATATATGctttaatgttttgtgtttccatttctcttttttttccaataaacaccaatagagagtttgtgtttgtggatggagtgtcaaaaaaaattgatgCAAATTTGATGCAAATTTGTCAATTTGCTGTTTTAtgttcctggaaaaaaaaaagtacttgtCAATTATATACATCATTCAATTTTGAAAA

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08107 GPC1; glypican 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377454 lncRNA downstream 634841 11801647 ~ 11801862 (-) True G318660
TU377417 lncRNA downstream 730826 11619876 ~ 11705877 (-) False wu:fb63a08
TU377875 lncRNA upstream 60848 12583865 ~ 12584089 (-) True G319059
TU377987 lncRNA upstream 110876 12633893 ~ 12648886 (-) True G319163
TU378012 lncRNA upstream 231751 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA upstream 241237 12764254 ~ 12765991 (-) True G319182
TU378022 lncRNA upstream 249632 12772649 ~ 12796934 (-) True G319186
XM_026925335.2 mRNA downstream 73110 12063866 ~ 12363593 (-) False LOC113533285
XM_026925333.2 mRNA downstream 73110 12063866 ~ 12363593 (-) True LOC113533285
XM_034297714.1 mRNA downstream 730868 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925637.2 mRNA upstream 112040 12635057 ~ 12722764 (-) False gpc5c
XM_026925636.2 mRNA upstream 112040 12635057 ~ 12722763 (-) True gpc5c
XM_034297706.1 mRNA upstream 201917 12724934 ~ 12726494 (-) True LOC117595730
XM_034297734.1 mRNA upstream 229633 12752650 ~ 12754252 (-) True LOC113533469
XM_034297707.1 mRNA upstream 233687 12756704 ~ 12757144 (-) True LOC117595732
trnaw-cca_17 other downstream 888264 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 1908453 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3463491 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3482593 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3550994 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 2208895 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2704455 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 3164241 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 3164241 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3834557 16357574 ~ 16367004 (-) True G321462

Expression Profile