RNA id: XM_026925383.2


Basic Information

Item Value
RNA id XM_026925383.2
length 1937
RNA type mRNA
GC content 0.45
exon number 9
gene id calr3b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16187989 ~ 16193122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAAACCTCACCAGACCTGGCTGAGGTGGACAAATCGCTGGAGGGGGAAGAGCTAGGAAGGAAGACTGGTACTGCTTCACGAGAAATTTGAACTAAAAATGCAAAGCTTTACGTTGTTTACGATATTTTCAGTAGTGCTGTTGACGTTTTCAGTCGAAGCTACTGTTTACTTTAAAGAGCAATTCCTCGACGGTGATGCATGGAAGAGTCGATGGGTGAACTCGGAACACAAATCTGACTATGGACAGTTCAAACTCACTGCTGGAAACTTCTACGGTGatgcagagaaagacaaagGCTTGCAAACCAGCCAGGATGCCCGCTTCTACGCTGCCTCTGCACGGTTTGAGCCCTTCAGCAATGAGGGCAAAAGCCTGGTGATCCAGTTCTCTGTGAAACACGAGCAGAAGATCGATTGCGGAGGCGGCTACGTCAAGGTCTTCCCCGCTGACCTCAACCAGGCTGATCTGCACGGAGACTCGCAGTACTACATCATGTTTGGTCCGGATATCTGTGGTTACAGCACAAAAAAGGTCCACGTCATCTTTAACTACAAAGGCAAGAACCACCTCATCAAGAAGGAGATCAAGTGTAAAGATGACGAGCTGACCCACCTCTACACGCTGATCCTGAACCCAGACCAGACCTATGAGGTGAAGATCGACAACGAGAAGGTGGAGTCCGGCACCCTGGAGGAGGACTGGGACTTCCTGCCTCCTAAGAAGATCAAGGACCCTGAAGCAAAGAAACCAGAGGACTGGGATGATCGAGCCAAGATCAGTGACGAGACAGACACCAAGCCTGAGGACTGGGACAAACCTGAGAATATTCCAGATCCTGATGCTAAGAAGCCTGAAGACTGGGATGAGGATATGGATGGTGAATGGGAGCCTCCCATGATCCCCAACCCAGAGTACAAGGGAGAGTGGAAACCAAAGCAGATCGATAACCCCAACTACAAAGGAGTCTGGGTGCACCCAGAGATCGACAACCCCGAGTACAGTCCTGACTCTGAGATCTACAAGTTTGAAAACGTTGGAGTTATTGGGCTGGATCTGTGGCAGGTCAAGTCCGGGACCATTTTTGACAACTTCCTGATCACAGATGATGTGAAAGAAGCAGAGGAATTTGGAAAAGAAACATGGGGCGTTACTAAGGGTCcagagaagaaaatgaaagatgaGCAAGATGAAAAGAAACgcaaagaggaggaagaaaagaacaAGGACCAGGACACAGAggcagatgatgatgaaggagacgacgaagaagaagaggaggaagaggaggagacagagacaaCAGAGGAGCCCGAAGCAGAGGGAGAGGAGGACGATGTTCAGCCTAAAGACGAACTATAAACCAGGAAGTGCTTCCTCAGCGCATGCGTTCTGGCACCAGGGATACAGCTGCAGGGCATCGGCTCAAAATGATGCCAATTGGAATGGGACTCTGTTTTTTGCGTTTTATGCGGAACAGAAAGCAGAGTAGTAAATTTCAGATTTAGAATTCAGCGTTGTGTTTTTGGGTGTATGTTTaactttatatacttttttttttttttttttttcttttctttttttgaggGTGGGAGATGAGGTTAGGAAGCAGGTGTAGGATTTGGGGGTTGAAATCTTTcataaatcttttctttttgccttaagggaaaaaaaagatcagactACTTAGACATATCAGTTTCATTCTGtggtattttttattaaaaaaaaaaaaccctgaagtcTTGAAGTTAACACGGCTGTAAATAAGATAAAGTTACTGGTTCACAACAGAGGAAAATTTCTACCTTGTGAGAATGTGGTGACTCGAAAGAGTGAATGTTTGCAGAAGATTGTATTATACTTAAAATCCACAGAATTTCAAACAGCACCTCCTTCCACTCATTCTGTGATTAAATTTTTTCTCTTTGGCACTGA

Function

GO: NA

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580325.1 lncRNA upstream 986 16185620 ~ 16187003 (+) True LOC117599979
TU380437 lncRNA upstream 50385 16135324 ~ 16137604 (+) True G321258
TU380433 lncRNA upstream 56984 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 57305 16130422 ~ 16130684 (+) True G321255
TU380431 lncRNA upstream 57720 16129949 ~ 16130269 (+) True G321254
TU380634 lncRNA downstream 193135 16386257 ~ 16386523 (+) True G321429
TU380639 lncRNA downstream 243077 16436199 ~ 16446124 (+) True G321434
TU380640 lncRNA downstream 263321 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 401075 16594197 ~ 16600593 (+) True G321454
TU380777 lncRNA downstream 473308 16666430 ~ 16703816 (+) True G321563
XM_026925384.2 mRNA upstream 7490 16174570 ~ 16180499 (+) True rx2
XM_026925885.2 mRNA upstream 20643 16162454 ~ 16167346 (+) True cplx4c
XM_026925606.2 mRNA upstream 67956 16112035 ~ 16120033 (+) False si:ch211-178n15.1
XM_034314867.1 mRNA upstream 70644 16112036 ~ 16117345 (+) True si:ch211-178n15.1
XM_026925364.2 mRNA upstream 85547 16100533 ~ 16102442 (+) True jund
XM_026925167.2 mRNA downstream 3802 16196924 ~ 16223330 (+) True eps15l1b
XM_026925172.2 mRNA downstream 3802 16196924 ~ 16223330 (+) False eps15l1b
XM_026925175.2 mRNA downstream 3802 16196924 ~ 16221020 (+) False eps15l1b
XM_026925170.2 mRNA downstream 3802 16196924 ~ 16220988 (+) False eps15l1b
XM_034314694.1 mRNA downstream 3802 16196924 ~ 16220988 (+) False eps15l1b
trnag-gcc_20 other upstream 948 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 2422 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 3847 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 55625 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 67956 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 658323 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1285712 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 1285712 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 1377527 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 2033440 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile