RNA id: XM_026925431.2


Basic Information

Item Value
RNA id XM_026925431.2
length 4658
RNA type mRNA
GC content 0.43
exon number 13
gene id mbnl1
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11108408 ~ 11170392 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAGCAGAGAGGACAAGGACGTGGTGTATTGGATGTGAGACAGAGAGCCAGCTAGAGAGACGGCAAGGTGTCACTTCCGCTTGCAGCGCGCCACATTATACAGAATAATTCTCACCCAGAATGCATAGCGGTGAGCAGCATGTGGTGTGCGGGTGAGTTCCTGTCTCGCTTTCAGAAGGAGCTCTgcaccagcaccacacacaggTGGGTACTGAAGGTAGTGCCCTCTCTTGCTGCAGCTTGGACCCGCTTGTAGTGCCAGTCCCTGCTTTTCGCAAGCTTGCTACCCAAACCAGGCCTGGACTTTCACCcggtgacctctgacccctgaTCCTGCAAACCCCTGCCACCTCTGCAGACCCCAGACCTCCCACGTGCTCCACCTTCCACACAGCTGCAGTACCCCAGGAGCTGCCAAGTGCCAGTGGGATCGCTTGGAGTTTTTCACAATTGGAGCTTTCtttatgtgcgtgtgtgtgcgtgtgtgtgaaaaaaagagaaaaaacagccAGAAgtaaaaagtttttcttttcttttctgctgCCTGGGAATTCTCTGTGATTCAGTGTCAAGTCCTTGACCCCCACACACTCCGTTGTGGAATAGGCTTCATGTTGATTGTTTGAAAAAGAGAAGCAAAGAGAAACTTCCCATTAAAGGACACCCAGCAGATTCTCCTGaccttgaacacacacatacacacatacacacaagtttGTGCTAGCCATGGCAATGAACATGGCACACATTCGCGACCCAAAATGGCTGACACTGGAGGTGTGTCGTGAGTTCCAGAGAGGCACGTGTTCACGCTCAGACGCTGAGTGCAAATTCGCCCATCCAGCCAAGAGCTGCCAAGTGGAGAACGGCCGAGTCATCGCCTGCTTCGACTCACTCAAGGGACGCTGTTCCAGAGAGAACTGTAAGTACCTGCACCCGCCTCCCCACCTGAAAACGCAGTTGGAGATAAACGGCCGCAATAACCTGATCCAGCAGAAGAACATGGCCATGCTCGCCCAGCAGATGCAGATCGCCAGTGCCATCATGCCTGGCAGCCAGCTTCAGCCAATGCCTTTTATCTCTGTCACGCCGAACTTAGCCACCAATGCCAGTGCCGCAGcggcagcagctgcagcagcggCGGCTACATTTAACCCGTACCTGAGTCCCGTATCGCCAGCACTAATGCCCACTGCTGCTGACATCCTGCCCAGCGCGCCAGTCCTAATCGGTGGAAATCCTGCTGCTGTGGCCCCTGTAACCTCCACAGCCAACGCAGCTGCCCAGAAACTACTGCGCACCGACCGCCTGGAGgtgtgcCGCGAGTACCAGCGTGGTAATTGCTCTCGCGGTGAGACAGACTGCAGATTTGCTCACCCGGCTGACAGCACCATGATAGACTCCAGCGAGAACACCGTCACCGTGTGTATGGACTACATCAAGAGTCGCTGCTCACGGGACAAGTGCAAATATTTCCATCCTCCTGCACACCTGCAGGCCAAGATCAAAGCAGCACAGCACCAGGTGAACCAGGCCACAGCCACCGCGGCCATGACGGCTGTCAAATCACTGAAGCGACCCCTCGAGGCCACCTTTGACCTGCAGGGCCTTCCTCATAGCGTAATTCCTCCTTTGCCAAAGAGACCAGCCCTCGAGAAAACCAACGGTGCCACCACCATGTTCAATGCTGGCATGCTGCAGTACCAACAGGCGCTGGCCAACATGCAGTTTCAGCAGCAGGCTGCGTTTATTCCTTCAGGCTCAATATTGTGCATGACTCCTGCAGCGAGTGTGGTACCCATGATGCACGGCGCTTCACCGGCCGCTGTGTCCGCAGCAACCACGTCCGCCACTACTGTTCCCTTCGCATCcgcatcagccaatcagGACTCTTCTCTATCAAAGCTGTCTACCAACGAATACATGCAATTGATTCCAATAATATCTGCAGAACATCTGACTAGCCACAAGTATTTGACTCAAATGTAGTCAGAGGCCAAACCAatcAAACGAACCTGCTCATCTGTTACCTGGGACAGACACAAACAATTTAACGCCAACaaatattcacatttcattCACATCATTAGAGCCCTCGAGGTATCATTAGTTCACTGATATAATATTTAAAGGACTAGTCCATGACATACCAATATGCAGAAACATGCAGTGCCCTTAGAAGTGATGTGCAGAACTTGAAAGAATTTGATGTACATAAGATGGGTTCATACACTTACAAACACTTAGCTAGAAATACTCTGTTAGTACCAAGTCTAACAATTTAGAGATTAGATATGATACCAACAGACGTGATAACAATAGACCaaaagttgtattttttttaaattacctcCCGTAGGTATTTAATtgatgatttaatttatttgtcagTAGCAATTTACCGAAGGTTAAAATTGTAGAGTTGGtggtttttcacacacacattaagccGAAGCGTAGATATTGAACACCGTGGCACTAAAACTTCGTCCCAGACTGAAATATTACAACGATCATACTATAATAGCTATAGTAATAAATTGTaaggtcatttttttctctttatagtGAGTAAAGTGGTAAGACCACTCTAAATTTTGTGCTCGGGTGTGATGGGAACATACAGAAGTGAAAAAGAGGTGTTTATTCGGACGGAACGGAGGGAAGCAGGTCTGTGTTGCATGCCTGTTAAACCAGGTACAGTTCACCTTCCAGTCTTAACGAGTGTACATTCATTAGCCATGTTAGTTTGGACACGCCTACGTTGGTGAATTGTAACGCATCACGCTATATTCTTATAAGTGCTTAGAAGCCAATGCCTGTTCATTTCTATTGAACGACAAATAATTAGCATTGGTTTTGCAGAAGTCAAACGTTCAGTTTTAGATGTATTCCTGAGATGCGTTAACTGTAACATCTGGTGAAGCGTTACTGATTTGACAAGGGTGGtttacaaaaatgtgaaaatgcacCTTAAATTTAAAGATAATTACAATTCTTCATGGCACAATACATCCGGCgaaaaaagcagttttttttgctgcattaAAAGTGCAGACTTGCAGAGGAAGGATCAGGATTAAAGAAGActaatgaatgtttttatgtaaaaccAGAATCCTTCTGACCTTTTAAAGCACATCTTAGCTTTAAATCAAGCTTCACAAGATATACAATAGGCTACAAATGGAAAGTGTTATATCGACAGTGTTATTCTGTTTACCAGACATTGTTTTTATACATAATTTCAtgtctaagtttttttttctaatgaatttttattgttatttgtcTGTAATGCTCTCGATGGCTTTTCCATTCAGCCTTAGATAGGCCTTTTCGACTTGCATGAAAACAGGGTTGCCTTTTCCTTCCTGTTGCCATATATAGAGATTTTTATTGCCTTGAATGACGGAGTGGctttttattcatgaaatggGGAATGGGTGTCGGTGATCACCGAATGTCTTTACATTGTCAACTCAGACTCTTAGAGCATGACGTGAAGAGACTGTTTCCAGTCACAGAGTGGAGTATCAATGAGGGCGCTGCTTGAACCTGATGGTCAGCGTAGTTTCGATTTGCTTTGTATATGAGAAAACCAGATATGTATTTGGTTCAAGTTTTCTTTTGTATGGATTCAGTGCCATTTGTGTTGTATGTTTATGATTCCTGATCTCAAACAGCTTTTAGCCTatgtacagcaaaaaaaaaaattgatgataATGTTGAACATTCTGTTAATTCGTGCCAAAGTTATTTTTCTCGTTGTTTTTGTGGGTTTCATGGTCTATACTGGTAGTGAATGGTGAATGGTCATGGTATGATCAAGGCCAAACCTAGTTAAGAGAAAGCTTAATGAAGCTACTCCATATTTTCTGGTATAATTTCAGAGCATAGTGAGACTGAAGTTCAGAAATGTTAGACTCCCAGTTGGTGTTAGATCTAGATCAGTGGAGCCTATATGTCTTAAGTCTATTTTTGGTGTATAAAGAGATATATCATTCAGGGTTGGGGTCAATTCAATTTTCAAGGTTAATGAGATGATTTATGAAAgactatttaaaatgtattagtaAATGCTGTAAAGTCTAATTCAGCTCATCGGCTGAGGCAATCGAATGAACTGAAATGGGATTGAGCCCAACTCTGGTGCTATTGCTGTTTCTTCACTGAGGCCTTAGATTTCAGTTCGTGTTTTCACTCAGATGTTCCTTCAGTCATTCTTATCGtttatgcatattttatattttttattaatcattttaacacGTACTGCTCAGTTGTTTACTTCACCAGCTTAGATAAAATCATATTGCTACATGCTGCATGTTTACTTTGTGGAATTTACTTATTTTGTATTTGGTAATATTTGGTTTTAGACTTGTAGTCTTGTTTTCTGGACTTGTAAATGCGTTTCGTTCCCCATTTCGCTCCCCCTCCCTCCGTCTCCATCattcttattaattaatgtttagtgattttagtttttgttgtacattttactttcttttttggAAGATTTATGTTCGAATGTTttgatgttctttttttaaatttgatattGTCTTTTGTTTTGATATTGATTTTGAAAAATAGTTGAGTTGAAATGAACCAGTATGACATTTcttaatttaacaaatttaatttgtaCGTA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376961 lncRNA downstream 99238 11007152 ~ 11009170 (-) True G318293
TU376853 lncRNA downstream 186846 10847475 ~ 10921562 (-) False G318202
TU376854 lncRNA downstream 216853 10845723 ~ 10891555 (-) False G318202
TU376851 lncRNA downstream 231113 10845723 ~ 10877295 (-) False G318202
TU377193 lncRNA upstream 16805 11187197 ~ 11187400 (-) True G318479
XR_003403404.2 lncRNA upstream 224489 11394881 ~ 11411164 (-) True LOC113533221
TU377280 lncRNA upstream 230273 11400665 ~ 11401502 (-) True G318552
XR_004580316.1 lncRNA upstream 234156 11404548 ~ 11411161 (-) False LOC113533221
TU377282 lncRNA upstream 234982 11405374 ~ 11410232 (-) False LOC113533221
XM_026925508.2 mRNA downstream 16821 11035914 ~ 11091587 (-) True kcnab1b
XM_026925135.2 mRNA downstream 78918 11010346 ~ 11029490 (-) False pask
XM_026925134.2 mRNA downstream 78918 11010346 ~ 11029490 (-) True pask
XM_026925597.2 mRNA downstream 98167 11001980 ~ 11010241 (-) True mterf4
XM_026925619.2 mRNA downstream 106855 10997139 ~ 11001553 (-) True LOC113533463
XM_034297704.1 mRNA upstream 55410 11225802 ~ 11230391 (-) True LOC113533464
XM_026925127.2 mRNA upstream 84038 11254430 ~ 11257433 (-) True scg2b
XM_026925128.2 mRNA upstream 84038 11254430 ~ 11256894 (-) False scg2b
XM_034314683.1 mRNA upstream 116784 11287176 ~ 11325246 (-) False gbp2
XM_034314682.1 mRNA upstream 116784 11287176 ~ 11308154 (-) False gbp2
TU376553 other downstream 580158 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2135196 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2154298 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2222699 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2619779 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 377976 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 3561520 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4057080 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4516866 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4516866 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile