RNA id: XM_034314838.1


Basic Information

Item Value
RNA id XM_034314838.1
length 1607
RNA type mRNA
GC content 0.54
exon number 7
gene id vapal
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15192241 ~ 15213022 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtcagtgctgaggGCTTGGATTTCTCCGCGCTCCCGCTCGGTGGCTCTCTGGAAACGGCGATCCGGCGCTGCAAATCCCCCCGGCAAACATGTCCAAGCTGGAGCAGGTCCTCATCCTCGATCCTCCGACTGATCTCAAATTCAAAGGTCCGTTCACAGATGTCGTCACGGCTAACCTGAAGCTGACGAACCCGTCAGACAAGAGAGTGTGTTTCAAAGTGAAGACCACAGCGCCACGCCGGTACTGCGTACGGCCCAACAGCGGCGCCATCGACCCTGGCGCCTCAATCAGCATCTCAGTTATGCTACAGCCCTTTGACTACGATCCCAATGAGAAAAGTAAACACAAATTCATGGTGCAGACCATCTTTGCACCGGCCACcatcacagacacagagaccatgTGGAAAGACGCAAAACCCGATGAGCTCATGGATTCCAAACTgagatgtgtgtttgagctgcCTTCTGAAAACGATAAAATGTCCCAGCTCCTACAGTTTGGCGTAGGAACCCCCGTGCCTGTGCCCAGTGCAGCTGAGCCTGGCACTGAGAGGGCACTACGGCTGCCCCCTCACCTCTCTGCCACACCCACCTCAACCTGGGCCGAGTTCCTCACCCCGCTGAGAGCCCGCCCCCCCTTTCCCCCAACTCCCAGCAGCCTTAATGGTAGGAGCGAGCTGCAGGGCTTCAGGACTGCGCCCAGTTCAGAGATCAAGAATAGGAGAGGTCACGTGTGTGAGGGTCAGACAGGCAGGCAAGCAGCAGGGAATGATGTGGATGCTGTGAACAAGACTGCCCCCGTGTTAGCCTCCTCCAAGGTGGAAGGACCGGCTGCACCCAAACCCGCAAGCGTTGCCCTGGAGGACACGGAGATGAAGAAAGTTCTGGAAGAGTGCAAGCGACTGCAGACGGAAATTAGCAAGCTGCAGGAGGAGAACAGGCAGCTTAAGGACGATGGATTGAGGCTGAGGAAAGCTCAGAGACCCGAGCACACAGCCTCCAATTCCAGCTCTCTGATTGGCCGAGAGGTGGCCACCAGCTCCCTTCCATCACTCCTGGTCGTCATAGCAGCCATCTTCATCGGATTCTTCCTCGGCAAGTTCATCCTGTAGATGGACAAGTGGAGGGGAGTCTGACGTGTCTGCCTGCCTATCAACCggttccagagagagagagagggagagagggaaagagagagggagagctcACACGGCCTGGATGAAAGGAGAATGTCTTTCTGTTGACTTTGCCATATCATTGGTAGCTGGGCCAGCGGCAGAAACACACATCTGTGCGGCATCATAACGTCCTCAGCCTCACATACGGTTAGTCcaacacgagagagagagagagagggagagagagatggagggagagaaagagagaacaaaaagcAGGAGCAGAAGTAAGGCTCtttcccctctctgtctctttttattcCCACACCGTTCTTTTCTTTGTGCAATGGACAGAAGGTAACTGAGCAAACAGGCTTAAAACACAGCAGTGGTTTAAGAGAGAGTGATGAAAccatcacacaaaaaaaaaaaaaaagaccggACACATCTCAGAGACCCAAA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403412.2 lncRNA downstream 87778 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA downstream 87781 15095677 ~ 15104460 (-) False LOC113533367
TU379867 lncRNA downstream 126461 15064126 ~ 15065780 (-) True G320767
TU379728 lncRNA downstream 532298 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA downstream 560070 14627785 ~ 14632171 (-) True G320635
TU379941 lncRNA upstream 16581 15229603 ~ 15230010 (-) False LOC113533479
TU379997 lncRNA upstream 68413 15281435 ~ 15281638 (-) True G320864
TU380000 lncRNA upstream 69338 15282360 ~ 15282740 (-) True G320867
TU380001 lncRNA upstream 70613 15283635 ~ 15284425 (-) True G320868
TU380003 lncRNA upstream 72616 15285638 ~ 15285941 (-) True G320870
XM_026925744.2 mRNA downstream 147157 15042706 ~ 15045084 (-) True LOC113533544
XM_034297720.1 mRNA downstream 156260 14834902 ~ 15035981 (-) False LOC113533549
XM_026925031.2 mRNA upstream 3706 15216728 ~ 15220876 (-) True LOC113533134
XM_034314544.1 mRNA upstream 9756 15222778 ~ 15231580 (-) False LOC113533479
XM_026925644.2 mRNA upstream 9756 15222778 ~ 15231254 (-) True LOC113533479
XM_034314545.1 mRNA upstream 9756 15222778 ~ 15229740 (-) False LOC113533479
XM_026925034.2 mRNA upstream 56137 15269159 ~ 15272159 (-) True LOC113533136
TU379789 other downstream 446754 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3643802 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4663991 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6219029 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 6238131 8904014 ~ 8954110 (-) False pitrm1
TU379938 other upstream 14450 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 474236 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 474236 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1144552 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1406611 16619633 ~ 16619734 (-) True LOC113533663

Expression Profile