RNA id: XM_026925460.2


Basic Information

Item Value
RNA id XM_026925460.2
length 4270
RNA type mRNA
GC content 0.42
exon number 11
gene id cadm3
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10196108 ~ 10288224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGGACCGTTTTTGCTGCAGTAAACGGTAGCCGTTggagaggacaaaaaaaaaaaaaaaaagagaacacaacagaaaagaaagaatccCGCTAAGGGAAGCGTGAGCCGGACCTTAACGTAAGCACCATCAGTGTGTAAAGATTCAGCACGCAGCGAACGGGGGCTTCACGGGCACAGCAGCTGGGTAGACTTTCAGTGAGCATTGCATCTTCAGGTTTTACAAGGTTTCAGCGTAACGGACAGACGAATGAGAGAATTTTTGCAAGTGAATATGGCATTTTCGTCATTCCCACTGTCTACACTCATTGCCCTGGTGGTTCTTGTGGCATCCATTCAGAGCAACTCCATGTATGATGTTGATGAAGATCCTTTCCAGCCAGTGACCTCAGACGAGACAGTGGCTGAGGGAGGTACGGTGACTCTGACATGCCGTGTGGCTGAGACTGATAATTCCTCCCTCCAGTGGTCCAACACTGCACAACAGACGCTCTACTTTGGAGCTAAAAGAGCTTTGAGAGATCACCGTATCCAGCTCCATAAGTCCACACCCACAGAGCTGTCAATCACCATTTCGAACGTGCAGCTGTCAGATGATGGAGAATACACCTGCTCCATCTTCACCATGCCTGTACGGATTGCACGAGCAACTGTTACTGTACTCgGTGTACCCGGGAAGCCAGTAATAACAGGTTTCGAGGATCCAGTGCAGGAAGGAGGGAGTGTGACACTTACCTGCACCAGCACGGGTAGCAAACCTCCTGCTCAGCTGTACTGGTATAAAGGACAGGAAAAGCTggaggcCCGTCCCAATGTGGTGGAGTCAAACCCCAATGAGCCAACATACACAGTGACAAGTGTGCTCACGCTGCCGGTGACCAGGAGCGATAACAATGCCATGATCGGCTGTGCTGTggaccatccatccatcactaaTGGCGAGAAAAGGACAGAACAGCCTTTGAGCGTGCTGTTCTCCCCAAGTGTCTTGATTAAGCCAGAGAGCGACCTGCCTCGAGAGGGAGAGAGGTTTTCTCTGCATTGCGTGGGGAACGGAAACCCTGAGCCCTTGTCATTCGTGTGGCAAAAGAAAGATGCAGAGTTCCCTCCACAGGTGAGGCCTGATGGTGCATACCTCCGCTTTGAGGCCCTCAACAAATCCGATAATGGAGTTTACTTGTGTCACGCAGACAATGGAATTGGCTGGAATGAGGGATCCTACACCTTGCTGGTACAAGATGCTGAAGacCCCACAGCAATGTCCAGTTCATCCGGTGTTGATCATGCTGTGATTGGGGGAGTGGTAGCTGTCATTGTTTTCATCATGCTCTGCCTCCTCATTGTCCTCGGCAGATATCTCATCAGACACAAAGGTACATATCTGACCCACGAAGCGAAGGGCTCAGATGATGCCCAGGATGCCGACACTGCCATCATAAATGCAGAAGGTGGCCACTCTGGTATTGAGGACAAGAAAGAATACTTCATCTAAGTGtccctccatcactccatcttttctttcttcccttgCTTCAGTTCCTTTCAGGCGAGGAAATTTAAAAAGGACGAGTAAAAGAGTGAACAAAAATGTGGAACTgaagaaagcagaaaaagatCAGTTTCAAGCTGTGTTGAAACCAGGGAGTTTTGCACTGACATCAGTATtcaactgtatacacacacacacatacacacacatacacacacacacacatgcatgtgcatacacacaaatagaGGGCATGCCTACGTGCTCTCAGATTCATGCCTGTCCCCAGTCACTTCATATGCCTCCATGTTTATATTCAACAAAGgcaatatgatgaaaaaaacatgtaactCACAGTGGACACATATACAAtttaattaacacatacacatttttagCAATCTGTACCTTCAGTTTCATTTCCCACGCATCTaacatgcacgcacacatacacccacacataGCAATCGAAGAACCCAATACAACATCCCGTTAATCCCCTAATACAGCAGAAACAAAGGATATCTTAATACTGGgcaatacacacaacacacaggcaggcaggcaggcagatgagcgtgcgcgcacacacacacacacacacacacaaacatactcaGTGCAATCATGCAAAACAGCTTCTGTGCTGTCATGGAACCCCAGAATAaatgtatagatatatatatatagatgatTATATAGCATTGTTTTTACTTGGGAGAACTGGTTCAGTGTGGTGTAAATATACTCTCTGTCatgctccctctctcttttacCTCTTTTCCCTTCTCTCCATCCTTCTTCTTAACCTATATAtgttctcttattctctctctgtctgcatttCATTCTCTcatattacagtatatactcTAAAAGCCTGCCTGGTTTTCTTACATGCGTGAAAATGcattgagttaaaaaaaaatcgataTATGgggtatgaaaaaaaaaatgttaccatGAAAATGTCAGTACTGCAAATATTGGTATGAGTTTTTGTTTTCCTCCAGTTGAGTTTCTGGTGTAACTGTTGGTGGCGCAATTTTCAGTGTCAGCTGTCATCCCAGGACTTAGTATTAGtatcatcaccattattattattattattattattattattattattattataaacccATGATGAAATAAATGCCCTTTCCTTGTTAGCCCAGTACTTGCATCCcatacatcacttcctgtccttTGATGACAGGTGAATGAGCTAAAGCAGGGTACTGCATGAGCgaacaagcaaacaaaacaaacaaaaacaagaagctAGACTCTTCTGTCTACTGTACTTTCCTCTTCATGTTTCCGTCTATCCTttactgtctctctttgtctccctATACAGTGTTTAAACCTAGTTTCAGTCTGTGTCTGTGAAAGTCCATTCTGGTTCTCCTTAATAACTATCAGTAGTCTGTCTCTGACATACTAGATCTGATCAGTATTACTTTGCGGCTAGCTTATTTAAGGCTAGAAATGTTGAAGTTTATTGTATGATAAATAGCAAGCTGAGATATTAACCAAACTGATAACTTCTGCTGTGCATCTCACACATGATcagtgttcacagtgtgagaCAAGTGGACTAAGAATTTATAATTTGGGATTATCTGAAACTCTGCATTCATCAGGTCAGGTTTAAATTTACTTGTGAAGTGGATTACTTATAATGTAAGTTGCATGAAGGACAGGGCAGATCTTTCCCAGCTTCCTCTGAATAGAGCTTATTCTCTGTAGAGCTGATCCATCACAAAATGAAAAGTGCTTAAGCCTTCTATCGACTCTACAGAGCAGTGTTGTCAGAGTTCAGTCCTTGAGGGCCCTAACTCTTTGGAGATTTGTGTTTAATACTCTTTTAACACATCTAACTCTGAGGGCCTTGATAATTATCTGATGAGTTGAACAAGGTGTGTTAAAATTAGTAGAATTCCTCCAGGACCTGAGACTGACACCATGGCTCTATACCCAACGTTTCCCAAACTGGTGCTCAGGGATTTAAAGTATTCAGTATTCTATATGGGTTGGTTCAGGTATGTTGGGAGCTGcaagaaagcaaaataaataaataaataaataaaattttaaaaataataataataaaaaaaaaaaaaaaattgactgtcTGTGGACCTGGGGTTTGGGAAACACTGCTTTAGACTATAGCCCTTATCATAGACCTCATGTTTGCATTTACAACCTTTCACCACTAGATGGTGCGTTATGTTAGACATCCACCTCTTCTTCATCTTTCCCCTTCCTCTCTCTGGTACAGGTAGCAGAATTTGTGATGCACCTTATGTTAATGGTGGATCATTGCAGTGGTTTATTTCTAAATTATGTTtatccctttttctttttgtagctCTGTATACAATTAAGtgtaaaatgttctgtttactTTTTATTGTATGACTAGATGTTATAGATGTTATAGACATCTATATTAAGGTGTAGAAGAGTATAGTTTCTGTGACTATTGTTTTAAAATCAGCcattttgtataatttaatgtaaatagtGTTGCCTTGAACAGTCTTCTCCTTACTACAGTTGTTAAGTGCACGCTCACACACTGACCCACATAAAGGGTTtgagaattgtgtgtgtgcactttccTATGTAAGATGTTCACAACAGTGTCATCTCCAATGggcaaagaaaacacaaagtgttGTTTTCCACAAGCATTGTTAATTTGACCGTCTATGTTAGCGCTGTTTTGGAATGAGAAGTCTTCCTTTtcaataaatattcatatgtCATGGAGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06780 CADM3, IGSF4B, NECL1, TSLL1; cell adhesion molecule 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376333 lncRNA upstream 8982 10186306 ~ 10187126 (+) True G317761
TU376326 lncRNA upstream 38578 10157277 ~ 10157530 (+) True G317754
TU376260 lncRNA upstream 89187 10105766 ~ 10106921 (+) True G317703
TU376171 lncRNA upstream 255871 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 316352 9878915 ~ 9879756 (+) True G317621
TU376532 lncRNA downstream 215939 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 229364 10517588 ~ 10520208 (+) True LOC117599937
TU376543 lncRNA downstream 236262 10524486 ~ 10524774 (+) True G317946
TU376562 lncRNA downstream 286590 10574814 ~ 10575152 (+) True G317963
TU376563 lncRNA downstream 287089 10575313 ~ 10575547 (+) True G317964
XM_026925414.2 mRNA upstream 10041 10173820 ~ 10186067 (+) True sdhc
XM_026925209.2 mRNA upstream 65386 10061226 ~ 10130722 (+) True atp1a2a
XM_026925570.2 mRNA upstream 142568 10042888 ~ 10053540 (+) True mpz
XM_026925572.2 mRNA upstream 142568 10042888 ~ 10053540 (+) False mpz
XM_026925571.2 mRNA upstream 146344 10042888 ~ 10049764 (+) False mpz
XM_026925708.2 mRNA downstream 3606 10291830 ~ 10347388 (+) True kirrel1b
XM_026925709.2 mRNA downstream 3606 10291830 ~ 10347388 (+) False kirrel1b
XM_026925002.2 mRNA downstream 244760 10532984 ~ 10534451 (+) True ccl20a.4
XM_026925350.2 mRNA downstream 248207 10536431 ~ 10562616 (+) False capn10
XM_034314752.1 mRNA downstream 248207 10536431 ~ 10562615 (+) True capn10
trnar-ucu_12 other upstream 8284 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 218207 9959329 ~ 9977901 (+) False pip4p1a
TU375892 other upstream 780944 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1383288 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1926910 8268709 ~ 8269198 (+) True G316745
XR_004580322.1 other downstream 248207 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 248207 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 275611 10563835 ~ 10568896 (+) False eif4e2
XR_004580315.1 other downstream 1111660 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 1179075 11467299 ~ 11469499 (+) True G318439

Expression Profile