RNA id: XM_026925492.2


Basic Information

Item Value
RNA id XM_026925492.2
length 1795
RNA type mRNA
GC content 0.43
exon number 6
gene id cdc34b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12986262 ~ 12999987 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaatcagagccaTACTGGAGATTCCAGCAGCTGCGACGAACAGTCAGTCAACTATCTCAGTTGTTTactccattttctcttttgaGCAAGTCGTTTTGAGCACCGTGTAGAGTTATTTTTTTGCCCCCAACAGAATTTGTCAACTTTTGTACAAAAATAGACAAAGCCAAAAGAAAATGGCTCAGAACAGCAGTTCTCACGTAGCAAGCTCACAGAAAGCGTTAATGCTTGAAATGAAAAGCCTGCAAGAGGAGCCAGTGGAGGGCTTTAAAATCACCCTGGTGGACGAGGCAGACCTCTATAACTGGGAAGTGGCCATTTTCGGACCACCAAATACACTCTATGAAGGGGGTTACTTTAAGGCACGTATCAAGTTTCCCATCGACTACCCCTACTCCCCTCCAGCCTTCAGATTCCTCACAAAAATGTGGCACCCTAACATTTACGAGaACGGGGACGTGTGTATCTCTATCCTCCACCCTCCAGTAGATGACCCGCAGAGCGGAGAGCTGCCCTCGGAGAGGTGGAACCCAACACAGAACGTCAGaaccATCCTGCTGAGCGTCATATCCTTGTTGAACGAGCCCAACACTTTCTCTCCTGCTAATGTGGACGCCTCTGTGATGTACCGCAAGTGGAGAGACAGCAAAGGAAAGGACAGAGAGTATGCAGAGATCATTCGaaagCAGGTTCTGGCCACTAAAGCAGAAGCAGAGCGCGACGGTGTTAAAGTTCCCACTACACTGGCTGAGTACTGTGTGCGCACGCGCGCCCCCCCTACAGACGAGGGCTCTGACTTGTTTTACGATGATTACTATGATGACGAGGACTTGGAGGACAATAATGATGAGGACTGTTGCTACGATGAAGATGACTCAGGAAACGAGGAATCGTGACCCTGCCATCACAATCATTATcctcttcatcaccatcatctttATCCCGAAACGTTGAAAAGCTGTCGCATGCACcttgtatttcttttcttttgaaaatgcTATAAAAGATGCTataggttctttttttttctagttggAAAATGAAAGCATTCTGTTTTCTCTCCGGTTTTTGTTGAATTGAGTTTTCCTTTTGTTcccttttttcatttatcttAACCTTCCCCCATTTTCTTGCGCTATGAAATTCAAACATTTCCGCTAAATAATAGAACAACTATGAATGGGTGAAAAggagggtgttttttttttgctgtactgTGCATGTTGGCATTGTGGTGTTTTTATTACACAGTGCTGCTCCCTTCATCCaccgtttttctttttttcccctgaaagtTCTCTAATCAAGGATAATCTACAAGTCCAACCagttcagcaataaaatgcattttgcaTACTTACATGCTCCAGAGGCAAGATTTAGAAACTGAATACAGCAGAGTTGTCTTTTATCCTGACGTTTGTGTTACAcgtgtgtttttcctgctctaacacaacTGATTTTATGCGCCGATGTGCttgagcaggaaaaacactgaactgtGTATTGCTGTGGATTGATCTACATCCGGTTTGAATGCTTGTAGAAAGATTTGTTATCGATGTTAAGGGACTGATTAATCTTTTGTTTTGAGGGAGAAACACTTGATGTGTGCCCTGCAGAGGCCTAAACCCCTACTACCACTATGTGAGATTCCGTGCATTATTTTATGATGGTGGTGTTTTAACCTCAAATTGTAATCCCATATTTCCTTATGTCCTGTGATAGTGTGCATCCGATAAACAAGGATGCGAATCATGACGTTAAAATGGtaggagggtttttttttt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378345 lncRNA downstream 70771 12908479 ~ 12915491 (-) False LOC113533649
TU378307 lncRNA downstream 129684 12811315 ~ 12856578 (-) True G319429
TU378022 lncRNA downstream 189328 12772649 ~ 12796934 (-) True G319186
TU378012 lncRNA downstream 207036 12754768 ~ 12779226 (-) True G319178
TU378376 lncRNA upstream 29169 13029109 ~ 13029704 (-) True G319474
TU378398 lncRNA upstream 69359 13069299 ~ 13069522 (-) True G319496
TU378446 lncRNA upstream 118848 13118788 ~ 13119111 (-) True G319544
TU378459 lncRNA upstream 135664 13135604 ~ 13135860 (-) True G319557
TU378461 lncRNA upstream 136445 13136385 ~ 13136589 (-) True G319559
XM_026925673.2 mRNA downstream 21481 12940528 ~ 12964781 (-) True kcnj9
XM_026925923.2 mRNA downstream 58191 12908453 ~ 12928071 (-) False LOC113533649
XM_026925924.2 mRNA downstream 58648 12908453 ~ 12927614 (-) False LOC113533649
XM_026925925.2 mRNA downstream 58911 12908453 ~ 12927351 (-) True LOC113533649
XM_034314668.1 mRNA downstream 95088 12844080 ~ 12891174 (-) False svilb
XM_026925700.2 mRNA upstream 161596 13161536 ~ 13165217 (-) True LOC113533516
XM_026925801.2 mRNA upstream 285432 13285372 ~ 13294978 (-) True cactin
XM_034314616.1 mRNA upstream 306837 13306777 ~ 13377178 (-) False LOC113533154
XM_034314611.1 mRNA upstream 306837 13306777 ~ 13339854 (-) False LOC113533154
XM_034314612.1 mRNA upstream 306837 13306777 ~ 13339854 (-) False LOC113533154
trnaw-cca_17 other downstream 1437823 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2458012 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4013050 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4032152 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4100553 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1731972 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2227532 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2687318 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2687318 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3357634 16357574 ~ 16367004 (-) True G321462

Expression Profile