RNA id: XM_026925495.2


Basic Information

Item Value
RNA id XM_026925495.2
length 4436
RNA type mRNA
GC content 0.47
exon number 19
gene id tcf3a
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15534922 ~ 15563785 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTTCTGTCGTCTCACTCCGCGCGTTGGCATAGTGCTGGGGTAGTTGTACGACAAAATCTTGCGATTCGCCCCTAAAGTTGTGAGGTATACGATTAGTTTTTGTTGTTATGCCTCGATAAGTAGCGTCGTTACGAATTATTCTGAGGTGGCGTGGTGATATGTGGTGTTGCTCGTTTTTGGGCGTTTGAAATCGGACACCGCTGTAACGTCCTCGTTTTTCGCGGAGTGATACAGTGTTGGGGATGACAATGTGGAGGAGGCTAAAATGTCTACTAGGAAGATGAAATGGTTAGCACTGCAGCGACCATAAGAAAACTGTAGTCTCCAACTTGGGTAGAGTTAATGCTTGAGTAGTTCATACGTTTGAACTCAGGGTAGCTCGGATACAAGACCTGGGAGTACAAAACTCAATTATTTGGCGGTTTGCGTGGCCTGAAACACGGGAAGGGGGATTTTGTCCCCCaactttgttttctctctctctctctctctctcccgaaAGGCACTCCATTTGGATGCCGAACACTTGAGCCGACAAAAGGGTTTTAAAGTCGCAgagtctatgtgtgtgtgctgagaaaGAATGAGTGATACCGGCATCAGAATGAGCACTGCAGGAACGGACAAGGAGCTCAGCGATCTTCTGGACTTCAGCGCTATGTTTCCTCTTCCAGGGATGAATGGGAAAAACAGATCCAGCGCTCAAGCCGGCGGTCAGTTTGGAGGCTCAGGTTTGGAAGATCGGAGTGGATCAGGCTCCTGGGGCTCAGCAGAGCAGAACAGTCCATCCTTCAGTTCACGGACATTTGACAATGTGGGCCACTACAATGAGCATGAAAGCATGTCCCCTTCGTCGATGTACAGCTCAGGAATTGGAGGTAAATCAGACAGAGGACCTTACTCCTTTGGCACACAGTTCCTGCAAGGGGAGATGTCCATGTCCAGTCCTGATGGCCTGTCCCCCTCTGGCGTAAAAGCCACATCGCCATTCTATGGATCTTACCCAGCCAATCGTAGGAGGCCTCTGGATGGAGTGCTTGATACCCCACCGAAGAAGATCAGGAAAGTACCACTTGGTCTTCCGACCTCGGTTTATCCAGTAGCTCCCAGTGACGACTACAACCAGGAAAACGCAGGTTTCCCGGCTTCGAAAACCGGCAGTATCTACCCTGGCACCGTGTACATGCAAGAGGGTCTGCAGGACCCCTGGGCTCAGTCAGGTTATTCCTCCATGCCCAACCTTGGCCAGTCCGGCCCATTTGCTGCCATCAACCCTCAGGATCGCCTGAAGAGACAGCCCCTGCCCCTGTCCCCTCCATCCTACCCTCACCACGGCAGCGAGGTGAACGGTGGCTTCCAGTCCGCATACACACCTCCCATCAATGGAACAGACAGTATCATGGGCAATAGAGGCAGCGCTGCAGGAAGCTCGGGGGATGAAATTGGAAAAGCCCTTGCTTCGATTTACCCTTCAGACAACAACGGGAGCAACTTCTCCTCCGCTCCACCTACCCCGGTGGGCTCTCCTCAGAACATGGCAGTCTCTGCTTCCCAGTGGCCCAGAGGATCGACTCAGTCTGCGCAGTCGCCCAACTTTGAGGGAGGACTGCAAGCTCTGCAGAATAAGATGGAAGACTGCCTGGGTGAAGCCTTGCATGTGTTGAGGAACCATGCGGTGGGTTCGGGGCTGGGTGCAGAAATGCACACCCTGCTGAATGCCGCTGGAGGGGCTGCAGGTCTGAGCTCCCTCAGCCAGACCTTCTCCCTGCACAGCAGAGTGCCCGGCATGGTGCCCAGCCATCACGAGGAGTCGGCCGGTCTGACACCCGCCAGTACCCTGTTACACGGgcaacacacagctacacaagcCCCCGCAAGCTCACAGCCAGAGGGCTTCTCCAGTTTGCCTGGAAGTCTGCCTCGCACCGGCAGCACAGATATAAAgagggaggagaaggaggatgaCGAGAACTGCTCTGTTATAGACAAGTCCGAGGACGAGAAGAAAGACGGCAAGACGAGCCGCACACGGACCAGCAGCGTGTCAGAGGAGTGCTTGACAGTGGAGGAGAAGGAGCAGCGTGACCGGGAGCGCCGCCTGGCCAACAACGCTCGCGAGAGAGTTCGAGTGCGCGACATCAACGAGGCCTTCCGGGAGCTCGGGCGCATGTGCCAGCTGCACCTGAAGAGCGACAAGGCGCAGACCAAACTGATCATCCTGCAGCAGGCCGTGCAGGTCATCCTAAGCCTCGAGAGGCAGGTGCGAGAGCGTAACCTCAACCCAAAGGCAGCGTGTctgaagaggagagaggaggaaaaggtGACCGGCATGGGTGGAGATCCTCAGATGCAGCTGGGAGGAGGAGGCCACCCTGGGCTGGGCAGTGATGGGCACActcatatgtaatatttatatTCTGTCCTAAAGAGTACTTTCAGACGTGGCCTTATTCTCCTATCTACCGTCTCAGTGTGTGAATACGCTCACCATGACTGTGCATCAGAATCTTTTGATCTTATGGACACATACTtgtgcaaacacacatatacacattttacTGAAAGCTGACACACTTTGACACAGCACACTCTTGCATAAATGTACACACAGATGTTATGGACCATTGGAGCATCCTAAAGAACACTGCTGAGAGATGGAGGAACTCTGAGCACAACGAACAAGAatctgtgctcttttttttcttttttctttttttttttataaaatataaatagacGCCTCTTGCTTACATATGGGAGCAATGAGAATATGGAGGTGTGTTTTGCCAGGATTTAATTCCCTATCGAAATATAGACAACCATTCCCAAgacttcaaaacaaaacaaaaggacaCACGCTTGTCAAGTTAAACCGAGTATATCCGGCTATACAAGCTACACCGTTAGAAGTCTGATAATTTGATGATCGGATATTGTGCTAGTACATAGcacatgtgcacacaaacacttcGTGGGCAGTCAAGGGCTCAAATTAGGGAACAGAAATCTTACCTTTTGGCTTTCTTTTGTACCATCACACATGACGGTGAAAGCATAAacggaaaaaaagaacaaccaCAGTGACAAACACATCAGCGCTCAATTTcagcttgtgtttttttgcattaacGTTGAGTGTCTGAGCTCGTGTACCTGTCTAACTGGAACCTATTCACCTCTTCATCCGTCACCACAGCCATGGAATCAACACTTCATTGTTACTTACTGGACTAGCAGTTtggtttatgatttatttttttaagaggaACAAAGTGTCCTCTTGACTATTGTGAGCAACTAACAGCTCTACATCCTTTCAGTCTCCTCATTTTTAGCATTTCAGTACTGTGCCGTCTGTCACGTCTTTGATCCTGGATCCTTCTTCCTGCtgttcttaaagaaaaaaaagtgtaaggAAACACTTTGGACATGGACACCATGTACGATTACCAATTGTCTTGATTGGATTTGAAGGGTAGATGTAGTCTGTTCTTAAAAGTACAGCAAAATCATGTCGAAGATTCGTGAAATCTGCTCGTTTTTGGCCAGTGATTCAGTGCTAAAGTTACGTCAGGGGTATTTGTGCATTTTGCTGACTCATGAGTGTCAACTGCATCTGCTGCCAAATCTGGATATCTTTCcttaaaatggaagaaaatggatCATTTGAACAATTACTTGGGATCTTACGAGAAGATcctgttgactttttttttttccttttcttcttcttcttctaaatgttttacaaatttaaatatgcGAAAGAACTTTGCGTTCAAGGATGCCAGGAACAAATGTAattgtttcatatttctttagcaattttgtattttaatgggGGGGATGGAATCGTAAccagcattctttttttttttttattattataaataagaaatacgTATTCCCTGTCCTCACTGCTCCTTTTGTTTAAAGGGTTTGAATCACTGCAATATCACTTCATTACCCTCTCAGTGATCGTAGTATTGTGGTTGCACCACCTTTATAAAATCTTTTCATAAAAGCTGACACAAAGGGTCATTTCAACAGCTGAATTTATCAGTGTTCTCCTTCAGTCAGTACAAAATCATCTCTGAAAACCAGAAAATGAATTGTGTTGGTTTGCATATTGCAATGCTCTGAATTTTGATGGAGGAAATGTGCAAGAGTGATTAGGGTGGCCTTCTTCATTCTCCGCGCTGACCTCCGTGCCCGGCGGGGTCGTACCGGGGGAGTGATACCGTACTAGTGCCTGCACACTGTTTTCAGTTCAATCCTGAAATCAGGTTTTAATTGCAATGTCACATGTTTTGCTGGCTCTAatggaatattttataaaattcacATGAAGACAGGGGTATGGGGATTTTTAGTGGATCTTAAATGAACTTTTGCTCTGCCGAGCAAATAAAGTACTTTCTTTGTAAATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380071 lncRNA upstream 71690 15461854 ~ 15463232 (+) True G320935
TU379980 lncRNA upstream 193715 15340566 ~ 15341207 (+) True G320848
TU379974 lncRNA upstream 224113 15310604 ~ 15310809 (+) True G320843
TU379971 lncRNA upstream 232192 15302318 ~ 15302730 (+) False si:dkeyp-68b7.7
TU379931 lncRNA upstream 281368 15249515 ~ 15253554 (+) False fcer1gl
TU380088 lncRNA downstream 2769 15566554 ~ 15570473 (+) True LOC113533167
TU380114 lncRNA downstream 6909 15570694 ~ 15571089 (+) True G320977
TU380120 lncRNA downstream 32239 15596024 ~ 15596226 (+) True G320981
TU380127 lncRNA downstream 49409 15613194 ~ 15613541 (+) True G320988
TU380130 lncRNA downstream 52212 15615997 ~ 15616218 (+) True G320991
XM_026925701.2 mRNA upstream 13701 15514412 ~ 15521221 (+) True map2k2b
XM_034314822.1 mRNA upstream 23009 15503636 ~ 15511913 (+) False pias4b
XM_026925705.2 mRNA upstream 23009 15503638 ~ 15511913 (+) True pias4b
XM_034314821.1 mRNA upstream 23009 15504325 ~ 15511913 (+) False pias4b
XM_026925707.2 mRNA upstream 23180 15503633 ~ 15511742 (+) False pias4b
XM_026925093.2 mRNA downstream 2775 15566560 ~ 15570478 (+) False LOC113533167
XM_026925252.2 mRNA downstream 8179 15571964 ~ 15578078 (+) True mbd3a
XM_026925253.2 mRNA downstream 8181 15571966 ~ 15578078 (+) False mbd3a
XM_026925254.2 mRNA downstream 8181 15571966 ~ 15578078 (+) False mbd3a
XM_026925255.2 mRNA downstream 8182 15571967 ~ 15578078 (+) False mbd3a
TU379509 other upstream 706151 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1639257 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1639257 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2762055 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 3962025 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 305231 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 366167 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 536748 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 548251 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 567550 16131335 ~ 16132364 (+) True G321257

Expression Profile