RNA id: XM_026925508.2


Basic Information

Item Value
RNA id XM_026925508.2
length 3100
RNA type mRNA
GC content 0.45
exon number 14
gene id kcnab1b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11035914 ~ 11091587 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATCACACTCGCTCTCTCAGACTCCGTTCCTCCAGCACTTGGCACTGCGATCATGCCTCattctcctctccctcctctctctcactctccttcaCTCCTCTCCTCTGCCTGTCTTTTTTCATTCACACGTTCCTTCATCAAGCGGGTGTTTCTTCCAAATCAGCACTGCACTGGCCAAGTCCGCGTCCCGCTAGTCTTGGACGAAAAGGGTTAAACAAAAATCTTCCTTTGACCTCTGTCTTCTCAGCACTTTCTTCAGTGGGAACCTGTTTTGAAAGGACATGGCTTTATGGTTTCAATGTTGCTTATCCTAACCTTGCCTCTCTCTGGATCTCTCACTTCACGTGAAAGAGTTTGAGACTGTCCTTTTGCTAAATGTCTGTAGCCGTTTCTGACTGGCGGTCTTACTGCGGTAGTCAGGGAAACCCCCCTACCTTGGTATCCTAAGGGGGAGGGGAAGACTCactgaagcagaaaaaaatagtaGGATAAAaatagaggaaaagaagaagaagaagaagaagaaaagagaggaacaGAGGGAGAAGTGGAGCagaatcagaagaagaagacatcATTTGTTGTCAGGGAGTGGAACAGCTTAGTGTCCctaaagcagagagagagtgaaagcaagagtgagagagagagggagagagagagcgagagagagagaggagagagagaatcacaGTAAGTCACACACAAGCAATGCTGAACGCAGCATGTGCCACTGTACAGACTCTGTCACTTTATGAAGACGACTGTATTCTCTGAGCACGGGAACCTCCAGGACTTTGCATCATCTCTGTTTCTTTGGACACACAGAAGGACGCAGCGCAGATGAGACAGGACATCACTGTCTTCTCTAAAACCTGCAAGCTCTGAATCAGCATCAGCAAGTTCCAGCTCGGACCTTGTGAAGTTTTTGCCACACAGTCCTCTTCTGCCTCGTTCTGCTCCTGTCCAGGGATTTAGTCAGTTCACTTCTAGCCATGCAGGTGTCCTTTGCATGCACAGATCATGGGCTCAAGGCGCCACGGAATAATGAGCCAACCAAGCAAAACACAGCAAGTCCGAACACGACAAGTGCAGCCCGGGCTCGGTTCCGCACAGTGGCGCTAATCGCTCGCAGCCTGGGATCCTTCACACACCGCCACCACATCTCACTGAAGGAGTCCACAGGCAAACTAACTGGCATGAAGTACAGGAATCTTGGGAAATCCGGATTGCGAGTATCATGTTTGGGGCTTGGAACATGGGTGACATTTGGGGGTCAGATTTCCGATGAGgtaGCAGAGCAGCTAATGACTATAGCCTATGAGAACGGGGTTAACCTCTTCGACACAGCCGAGGTTTACTCAGCCGGGAAAGCTGAAATAATTCTTGGAAATATCATCAAGAAGAAATGCTGGAGGAGATCAAGTCTAGTGATCACTACTAAACTTTACTGGGGAGGAAAagcagaaacagaaagaggtCTCTCAAGGAAGCACATTATTGAAGGTCTGAGAGGGTCTTTACAGAGGTTACAGTTAGAATATGTGGACGTCGTCTTTGCCAATCGGCCCGATAACAACACTCCTATGGAAGAGATTGTGAGGGCAATGACTCATGCTATAAACCAGGGAATGGCCATGTACTGGGGGACATCACGCTGGACCGCCATGGAGATTATGGAGGCGTACTCTGTGGCGAGGCAGTTTAACCTGATCCCTCCCGTATGTGAGCAGGCTGAGTATCATTTCTTCCAAAGAGACAAAGTGGAAGTGCAGCTGCCTGAGCTGTATCATAAAATAGGTGTGGGTGTGGTGTCCTGGTCTCCTCTGGCCTGTGGAATGATCACAGGAAAGTATGAGAATGGTGTCCCAGAATCCTCCAGGGCAGCAATGAAGTCATACCAGTGGCTAAAGGATAAGATAGTGAGTGAGGACGGAAGGAAACAGCAGGCTAAGCTGAAGGAGCTAAGTCACATTGCAGAAAAGCTTAGCTGTACACTACCACAACTTGCTGTGGCTTGGTGCTTACGGAATGAGGGAGTGAGTTCAGTTCTGCTGGGGAGCTCCAACCCTGCACAACTCACAGAAAACCTAGGTGCAATACAGGTGCTTCCAAAGATTACACCTAACATTGCCTCAGAGATTGACAAAATTCTGGGTAACAAACCCCACAGTAAGAAAGACTATCACCACTGAGGGATTCTGGGACTGAAACGGATGTGTGTCATTCCTGACCTGTCAGTATGTCTCTCACCTGCTATGTGGCATTACTGTAGACCATTGctgttatattaatataatggcAGTATATTCTGCCCGTGTGTCTTGAGTCAGTCAACAGAGCCATGCATGCttaagtgtgtgtcagtgtgactgAAGATCTCTGTGAGAAAAACACCTCACAGTAATAGTCCATATTCTAAAGATGTCGTTCTGTCTAACATGCATAATAAGAAACATTTAACAGTTGGTCATCCTCTATTGTCTCTTTGATTACTTTGGACATTAGAGGACAAGTCTGTTTGAATCATCGTGCCTGAGGATAAAATGTTAggctttaacatttaattaaatgtattttgataAGAAACAATGCAGATACAGTGGATAACGATGCCTGCAGGATTACACTGTGTGATCATGATTGACTGTGCAAGCTGGAACAGCATAGAACAGCACTGATGGACAAATACTGTGCTTTCCAAACTGTGCGACATTTTCCCCATAAAGTCAAAATTCCTTTGTCATATCAGTGTATGCCTGCTGCCTATTCACAGCTGTGCTCTGTTTTACCATAGATGGATATGTATCTATTCCAGAGAATCTGCTAATTCTGCTGCTGGATTTGCAATTTAAATTctgacagtgttttatttaatggcTTTGTTTGCAAATGGAATTGGTCATGCTGGTGTATTTGTCTGTGTTTAAGCTGAACCTGCAGATTTCAGATTTGGAGAGAGATTGTAGTATGATACATAGcataatacaatttatttaaacctgACTGTTCCAATGAAATGGTCAAAGTGTTTACAGATTTGTGATATAGGTTGTAAAGTACTTTACTGTTCAGTTTGCttttagaaatgaaataaaa

Function

GO: NA

KEGG:

id description
K04882 KCNAB1; potassium voltage-gated channel Shaker-related subfamily A, beta member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376961 lncRNA downstream 26744 11007152 ~ 11009170 (-) True G318293
TU376853 lncRNA downstream 114352 10847475 ~ 10921562 (-) False G318202
TU376854 lncRNA downstream 144359 10845723 ~ 10891555 (-) False G318202
TU376851 lncRNA downstream 158619 10845723 ~ 10877295 (-) False G318202
TU377193 lncRNA upstream 95610 11187197 ~ 11187400 (-) True G318479
XR_003403404.2 lncRNA upstream 303294 11394881 ~ 11411164 (-) True LOC113533221
TU377280 lncRNA upstream 309078 11400665 ~ 11401502 (-) True G318552
XR_004580316.1 lncRNA upstream 312961 11404548 ~ 11411161 (-) False LOC113533221
TU377282 lncRNA upstream 313787 11405374 ~ 11410232 (-) False LOC113533221
XM_026925135.2 mRNA downstream 6424 11010346 ~ 11029490 (-) False pask
XM_026925134.2 mRNA downstream 6424 11010346 ~ 11029490 (-) True pask
XM_026925597.2 mRNA downstream 25673 11001980 ~ 11010241 (-) True mterf4
XM_026925619.2 mRNA downstream 34361 10997139 ~ 11001553 (-) True LOC113533463
XM_026925617.2 mRNA downstream 40052 10994750 ~ 10995862 (-) True LOC113533462
XM_026925431.2 mRNA upstream 16821 11108408 ~ 11170392 (-) False mbnl1
XM_034297782.1 mRNA upstream 16821 11108408 ~ 11170346 (-) False mbnl1
XM_026925439.2 mRNA upstream 16821 11108408 ~ 11157331 (-) False mbnl1
XM_026925435.2 mRNA upstream 16821 11108408 ~ 11157331 (-) False mbnl1
XM_026925434.2 mRNA upstream 16821 11108408 ~ 11157331 (-) False mbnl1
TU376553 other downstream 507664 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2062702 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2081804 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2150205 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2547285 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 456781 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 3640325 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4135885 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4595671 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4595671 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile