RNA id: XM_026925515.2


Basic Information

Item Value
RNA id XM_026925515.2
length 4482
RNA type mRNA
GC content 0.43
exon number 8
gene id shda
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14748928 ~ 14764816 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTTCCTCCAGGTCGCTGCCTGTTGGATTTAAGCAGCTGCCTGCCATAACGCGTTACTCATTAAACCAGAGGCACACGCTCATCCTCTCCGGAAAGATGGAGCCCAGAGTTCAGtcggaaatgttttatttatagtttcttttttttttcattcatcgCTGAGGCAttggtaagtaaacGAGCACAAACTGACGGAGTCTGATGTTCTGAGCCATCGATGAATCGGACACATTAAAGACCCATGGCAAAGTGGCTGAAAGATTACTTGAATTTTGGCAGCAGGAAAGGACCTCCGCAGCCGCCCAAGCCCGATTACACAGAGAGCGAGATACTTCGTGCGTACCGTGCCCAGAAGGAGCTGGACTTTGAAGACCCGTATGAACCCTCAAATCGAGCAAATAATGGCTCGGGGACCACTGACCCATTTCCTGCATTCGGAACGGTTCTGCCCAACGGCATGGAGGTCAAGATCGTCTCTCCTAAGCACAGACTGATAAAAGTGGAATCTCAGGAATTCAACCGCTGTAAGGTCCCACTAGGCATCGTCTCATTCGAGGAGCCTCATGTCCCTGTTGTTCCATCCGCTCCAGCAGTGGGAGACACCGATTATTCAGACCCCTTCGATGCTCGTCCTGACCCACGAGCCCATCTCAGCTGGGAGTCTGGTTCTGtagaaaacagcagcagctacATGGAACCATTCGAGGCCCAGAGAGTCATCACGGAGCTGCAGCACGGCTCGGAGCACGGCCGCACTGTCTCTCGGGGAAGCCCACAGCTCTACGACAGTCCATATGAAGAACACAGACACTACAAGACCGGTTTCCCAGATGACGAGAGGGAGAGCCGTTTGCCCCAGGACGACGAGAGGCCTGCAGATGAGTATGACCAGCCCTGGGAGTGGAAGAAGGAAAACATCTCCAAGGCATTAGCTGtacAGTTTGATGGTGGTGATTGGGAGCGCTCCACACTGCCCCACACGGACCAGCACAGGAGAACTGGAGCGTCCAGAACCAGTCCTCCATCCAGCAAGGTCACCAGTCTACACAAACCCAGTGACCTCCACACTGTCCTGGGGGAGAGGGTGGACCCTGTATTACCTCTGGAACAACAAGTGTGGTACCATGGTGCACTGACGCGCTCTGATGCTGAGAGTCTGCTGACGCTGTGTAAAGAATGCAGTTACCTGGTGAGGAACAGTCAGACAAGCAGAAACGactactctctctccctcagGAGCTGTCATGGCTTCATGCATATGAAGTTCTCTCAGTCACGCGACGGGAAATACATCCTCGGCGAGAACAGCCCCCCCTTCGACACAATTCCAGAGGTCATCCACTACTACACCACCCACAAGCTACCCATCCGGGGTGCAGAACACCTCTCTCTGCTCTTTCCTGTGGTGGTCCAGACACTCTGAGAACATGCACAGCTGCACActggcccacacacacacacacagacacaggccTGGACTTCTTTTTGCTTagggcgcgcacacacacacacgttcatacatatatatatacactcaggGTCTAATCTTGGTCAGCTTGCAGTAGCGCTTTGTATTTGATGAAATGTGTAGTTTTATGTGTGGATTTTAATAATGGCTACCAATGATCTTTCATGAATTGGGTTGAAAATGCTCTGAATCACAGTTTGGAGTGTCGCTGATCTGAAGGCTggaatttaaatgaatattattGTGAGGGCTGAAATGATGCTGTAGGTTATTTGAAGATGTTTGACACTACACACTTCCCCATGCTTCTCATACCCTTTACACTATGTGACTTGCACAAAACTGTGGTATAGAATGGCTTTCATGTAGTGCATTGCTTGCCTTTATAACTAGTACTCTATTAGGCGGTTTTTGGAAGGGCCTCAACACTATAACAGAGTTTCCATAAACAATAGAAGTATGGAATCCATTTCTGCTGTGCTCTATAAGAAATGCCTTTGCTAAACTGACACACTGATATCAATATGTCCTATTCTCCATCAAGCTGTAGATCCTCGTACTGTACCTTCCATATCTCTGCTGTAGGCAACAACAGGACCTGATCCTGATACCTGATGAATATTAAGATATCAGTaattagggatgcatcaattCTGATACTCGTACTCATAAGTGCTCCGATACCACGTGAAACTATGTAACGTAAGCTTAGTGTACAAAATGACAGCAGTCAGGAGGTAtttcacaaacaaaacatgaaaaactgTGTTCTGTGAAAACATCAAGAGAAGGTACCACAACagcttcctacaatacaagtaataCGATAAAGCAtcttattacatttaaacagtatctttaatggAAAGTGTAAGGATGGCTTAGCAGTTTCAGTGAGCAGTGAGCTCAAGGTACTGTAAGTTGCAGACACACAAGCATGGAGCATTGAGGTGAGCGTGCAGAGAAATTTTCAGCACTtcagttcagcgagcactgagacacacacgTTTCCTTTCCACTTGCTCCCCTTACGAGTTAAGGTGCACAGCATTTTTAATGAGTACCctcgctgatactgctctgtacatcagatactgtttaaacaccGTATATAAAACTCATCACTAGGAGCTAACTGTTAGCTAACTGTTAGGAACAGCAACCAACATGATGTTTCATGATGCCCCTGATGGCAAAgtactaagtaggttactcatttcagtataGTATTGGTATAGATGAGTACAGAAAACATGTACTCCTAATCTGGAAAAgtggtattgatgcatccctatcAATAATTATAGAAGACATAGGTATTTAAATAACAAGCTTGGCCAAATCAAGTTgcatatatagtaatatatgaATGCCAATATTCCATTTGTCTTTTGGAGTTTTTGCAGCCTCTGTGGATTTCTGATAATGGGCGAATGAGACATACTGTTAAAGGAAACCAGGCAACAGCTGTGGAACGTATGGAATGTCTTTCCCTGGCACGGCTGAGCAGCTAAACACATTGCTGCTTGTTCCGGAGGCAGTGACTCAGGCGTGAGTTTAGAGAGAGGTGAAAATTGGAAGAAAAATCTTCACCTCTCCAGAGCTGAGAACCACTCGGTTGCGCATGCCCTCTGTACGCCAACAGTTTCTATTCTTTTTGGCAGGAGAAAGGAAGCCACCATTTCCGCAGGGCGGCACTTCATCAGCGGTTGCCGTTCACAGCTAGAAAGGTCACACTTACACTGTTAGAAACTACTGAACCCATGAGCACCATTAACACTTCCTTTGTTGTGATTGTACGGTTTACATTTTAGTTGAATCTCTTTGTAAATAGAAGCAATAGAAACAATTTTGAAGTGATGAGGGCATGTGTACAAATACACCATTATGAGATTCACCTTGAGTATTATTCATTCCTCCTTATCTGACGCTGTTTCCCATTGGGTGAGACTAAGCTTTATTTTAGTTGTGTTTAAACGTAGGTTACATCTGAATATTTTTCACAGAGAAGATTGATATGTTTTTGGTGAGGTGTTTTGTGTTAAAGTCAGTTCAGGCTTCAgactgaaaaaagtaaaaagctgACATGAAATCTGTTGTAGAAATTCAGTATTTATACCTATAACACGTTTCATTGATTGAGATGATTTTCCATTTGTCAATCACAAATCACACAAGTCCTCACAGCTGTGTAGTTAAAGGGATAGATCAATGTTTTTAAACCTAATCTCCGTCTACTGCATGTGTAGTGTGTCTGCCATTAATTATAGGCAAGAATTTCGACACGCATCCCTGCATtgagagaagaacagaaaacTTGTTTACTCAGAACTTCTATATAATAGAAGTCAAAGGGCAGCCTTTGAACTCAATTGATAAACTGTATAAAGCAAATTCTGAACTACAACCATTACACACTAACAGTAAAGCTCCTGTGATGCCAAAATTCTTCTTATGACCTTTTATCCACCATGTATACAGTAAAGAGTCATTTCTGTTTACTTAACACTTTCCCAAAATGCATTGCATTAGATAGTCTTATGAAAGAACGAATATGAACTTGGCATTATTTAAAGCAATACTGCAAAAGCAAGTGTACGGTTATACCAAATATCATCACGGCTGTCATTTGCCGCAGACACAAGCCCACAGGGCGGAGTGGGATAACAAACAGTTATCAATTCccccaacaactgcccttagacatCCATTACAAGTTAGCTTTGACTAAACTTTTCCGTTCTGTCGTGTGTCAAAAATTATCGTCTGGTGTATGGCAATTGCACATAGTCTACAGATGCAATAAAAGAAGATTAcgttgaaaaacactggagtataCCTTTAAGCTGTTAGACCTATGGCACACGCTAGCATTATCACAAGATCTACTCTGTTGCAGAGTGTAATATTAGAGAACTACACTGTAGTTGTGCTTGATTATGATGACTGACTACTTTTACTGACTTTCTGTACTTTGTTTCTTTGGAATAAAATAagcttttttaaagataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379728 lncRNA downstream 88985 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA downstream 116757 14627785 ~ 14632171 (-) True G320635
TU379329 lncRNA downstream 297905 14361947 ~ 14451023 (-) True G320317
TU379346 lncRNA downstream 353015 14391988 ~ 14395913 (-) True G320332
TU379304 lncRNA downstream 430603 14318057 ~ 14318325 (-) True G320294
TU379867 lncRNA upstream 299310 15064126 ~ 15065780 (-) True G320767
XR_003403412.2 lncRNA upstream 330861 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA upstream 330861 15095677 ~ 15104460 (-) False LOC113533367
TU379941 lncRNA upstream 464787 15229603 ~ 15230010 (-) False LOC113533479
TU379997 lncRNA upstream 516619 15281435 ~ 15281638 (-) True G320864
XM_034314868.1 mRNA downstream 3459 14731734 ~ 14745469 (-) True theg
XM_026925099.2 mRNA downstream 22930 14709122 ~ 14725998 (-) False LOC113533171
XM_026925531.2 mRNA upstream 1274 14766090 ~ 14772267 (-) True yju2
XM_026925745.2 mRNA upstream 43151 14807967 ~ 14818873 (-) True LOC113533545
XM_034314827.1 mRNA upstream 43151 14807967 ~ 14818866 (-) False LOC113533545
XM_026925762.2 mRNA upstream 70086 14834902 ~ 15035981 (-) False LOC113533549
XM_026925759.2 mRNA upstream 70086 14834902 ~ 15035981 (-) False LOC113533549
TU379789 other downstream 3441 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3200489 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4220678 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5775716 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5794818 8904014 ~ 8954110 (-) False pitrm1
TU379938 other upstream 462656 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 922442 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 922442 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1592758 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1854817 16619633 ~ 16619734 (-) True LOC113533663

Expression Profile