RNA id: XM_026925525.2


Basic Information

Item Value
RNA id XM_026925525.2
length 2883
RNA type mRNA
GC content 0.46
exon number 17
gene id ranbp3b
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13636465 ~ 13658131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTAGAAATAACGCCCGTGTGGcgcggtgcattgtgggtgtGCGCGGAGAAGTAAAATGGCGGACTTGGCAAACGAAGgaGAGAAGCCTGCCATAGCTCCTCCAGTGTTCGTGTTTCAAAAGGACAAGGCACAGAAGCGATCTGCTGATGGGTCCAGTGCAGAGGATGGGGAAGACTCAGACAGGGAGGATGGAGAATACTGTCCtccagtgaagagagagagaacctcGTCCTTAACACAGTTCCCACCTGCACATTCAGTTTCCAAGAATAATGTGTTTATGCCGTCAAGTTTCTGTCAGTCTCCAACAGGCAACTCAGACTCAGAACCAGAGGAGAAGCCAGTTGGATTTCGGTTGAAACCTCCAACTCTGATCCATGGTCAAGCACCGAGTGCAGGTGTACCCAGTCAGAAACCCAAGGAGCAGCAGCGCAGCGTCCTGAGACCTGCGGTCCTGCAGGCTCCACCCATCAAGACCCTTCCTGAGCCCAGCAAGAGCAACTCGAGCTGTGGAACAAATGGAGTGGGCAAGTTTTCAGAGGCAGCTACAGAAGGCCGGGCGATTTTCCTGAACAACACAGAGAGCTCAGACAAATCACCgAAGAAAGACAAGGAAGGAGGAGAGGATGACTTAGGAAAGACAGAGGAGAGCACACAAAAGAAGGATGTTGTGGTTGACCCTGGTTTCGTGTTTGGGCAGAATATCAAAGAAAGGGCAAAGTTGGATGAGAACAGCACAGTCAGTGAATCTAACGCCACACAGGACTCTCAGTCTGGGAGTACTAATTACTTCCTGCAGTACATGGGCACTTCAAGCTCTCTTAATGCTACGAACAACACAGACAAAGGAGCCAAGTTTGTGTTTGGCCAGAACATGTCAGAGCGAGTGCTGAGTCCTCCAAAAGGTGGTGAATCAACAGCAGAGGGCTGTAAAGACACAGCTTCAGCATCAGAACCCTCGTCACAGGAGACCACCCCAGAAAAGAATCACAGCGTGACAGAATCTCTAGAGGAATCGGCAGCAGCGTACACCAAAGCCACGGCCAAGAAGTGCATTTTGGAGAAAGTGGAGGTCCGCACTGGGGAGGAAGCAGAGAGCAATGTGTTGCAGATGCAGTGCAAGCTGTTCGTGTTTGATAAGCCAGCTCAGTCCTGGATCGAGCGAGGTCGAGGGCTGCTGAGACTCAACGACATGGCCTCTACCGATGATGGCACGCTACAGTCCAGGCTAGTGATGCGCACCCAGGGCAGTCTGCGGCTGATTCTGAACACTAAGCTGTGGCCTCAGATGCAGGTGGACAAGGCCAGCGAGAAGAGCGTCCGCATCACTGCCATGGACACAGAGGACCAGGGAGTGAAGGTCTTCCTCATATCGGCCAGCTCGAAGGATGCAGGGCAGCTGGCAGCAGCACTCCACCACCGCATCCTGGCCCTGCGGAGCCGCGCTGAGCAAGAGGCAGAGAGCACAGCCGAACCGCCCCACACCGAGATCACGCAATCCAATGAAGATGACAGCGATGATGACGTCGAGCTTgctaaaaacaacagcagcagcagcaacatcGCCCCTACAGGAAATACCACCGCCAGCGGCACTTCTGAAACCTCTGCCGAGGCACCGGCAGCTGAGAGCACATAACACCCTGGTCAGCCGCCTGACTAAAAACTGCtcaacagggttttttttgtgcaggCATCTGGGTGGACAGCCTTAACCACCGCAACACTTTCAGCCCAGCGCTGTGGGTCCTTCAGCTCCAGCCCTGTAGCAGAGCTCCAGCGTCTCTCACTTAAAACTCGTagttcattttttccccccttcctACATTTATTGTGAATCtggaattcaatatttttgtttttatcattttgttggcttttttggttttgttttagttttccGAGACtgcaaacaaactaaaaaaaaagaggaaaaaaaaaatagaaacagactTTTCCATTTAAGGGTTTGGACTTGGCTGCTCATCATATTGATGAGCGTGAGGGTattcctctctctgtgttaaGATACGGCACATGTCACAGCTGCAATTTCTACCACAGGATTTGTCTTTTAATTTCCTGCTGTCCCCTCACCCACTGTATTATTTTCTCCTAATCTCTCGTGCTCGGCTTCAGACCACCACTGTATGACATTATTGCTCAAAATTATCCAACATCCGTTCAGTACATTTTATGCCCTCAACCCAAAACCTTGCTGGACCTCaatcattctctttttttttttttttttttttttgggcatcTGAGTCTAACTCATTTCCAGTGGTTTCCCATAAACGAGTACTCCTACTAGTCTGCTATGATGGTAGTTAGATCTCTTATTGATATAATGAATAAAGGACTAAACCAACACATGGACTGTGCTATTGCTTCTCCAATTTTCCACCACTGAGAAGAAGATAAGAAAGGTAAAAGGGAATTAACTTTGGCCCCCTCACCATTATGGAATCACCAGAATCTGCCCTTTAGCTTTGCTTATGGACAGATATGGTTATTTCGGGTTTGATTTGaacaaaaaatactgaaattttAAATCAACATCTCTGCAGATATCCATGTTTATTTTCCATATTCTGAATGTTTGTAATATGTTaccttttttattgttttattaccttttttttttttttttatccatttccaTGTCATTGGAGACAGTACAGTggagatgattttttttgtgtgtgtgaaatactgAGTGCATTTAGAAACGTGAATACAGAACTTCTCATGTAAATTTCTATGAATATATTATCATTTACTAGAACATGTCTCCAATCTCCTTtacaaaacaaatagaaaaaaaatcaaagttaaaaaaggaaaagctttgaaataaattttttgtGTAATGTCA

Function

GO:

id name namespace
GO:0046907 intracellular transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378685 lncRNA upstream 46150 13589599 ~ 13590316 (+) True G319755
TU378293 lncRNA upstream 125739 13505106 ~ 13510727 (+) True G319415
XR_004580330.1 lncRNA upstream 215083 13418555 ~ 13421383 (+) True LOC117599983
TU378255 lncRNA upstream 224859 13363825 ~ 13411607 (+) True G319382
TU378196 lncRNA upstream 330323 13239147 ~ 13306143 (+) True G319342
TU378818 lncRNA downstream 198834 13856965 ~ 13894441 (+) True G319867
XR_004576917.1 lncRNA downstream 246396 13904527 ~ 13910280 (+) True LOC117595740
TU378841 lncRNA downstream 250732 13908863 ~ 13909635 (+) True G319886
XR_004576915.1 lncRNA downstream 253440 13911571 ~ 13919146 (+) True LOC117595739
XR_004576916.1 lncRNA downstream 253440 13911571 ~ 13919146 (+) False LOC117595739
XM_026925179.2 mRNA upstream 49391 13571709 ~ 13587075 (+) True LOC113533215
XM_026925181.2 mRNA upstream 49391 13574606 ~ 13587075 (+) False LOC113533215
XM_026925077.2 mRNA upstream 71263 13437035 ~ 13565203 (+) False LOC113533157
XM_026925211.2 mRNA downstream 62835 13720966 ~ 13807258 (+) True LOC113533233
XM_026925216.2 mRNA downstream 62835 13720966 ~ 13807258 (+) False LOC113533233
XM_026925213.2 mRNA downstream 62835 13720966 ~ 13807258 (+) False LOC113533233
XM_026925215.2 mRNA downstream 62835 13720966 ~ 13807258 (+) False LOC113533233
XM_026925212.2 mRNA downstream 62835 13720966 ~ 13807258 (+) False LOC113533233
TU378000 other upstream 863599 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 2063569 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 2087278 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 2088287 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 2166967 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 179302 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 179302 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1169134 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2210885 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2271821 15929952 ~ 15936768 (+) False gpx4b

Expression Profile