RNA id: XM_026925531.2


Basic Information

Item Value
RNA id XM_026925531.2
length 1933
RNA type mRNA
GC content 0.44
exon number 8
gene id yju2
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14766090 ~ 14772267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAATAACATCTGCAGACGAGTAAGAATGAGACGGAAGtgaggctgaatcccaaatctCCTTATTGCAGATTTTAGTACACTTCATAGAACGTAGAAGCTATTAAATCATACTCTGAGATATATACACCTATATAGGGAGTAGACAGCGATTTGAGACTGTCCAAGTCAGAAGCTTTATTATTGCTTGTGTTCGTGTTTCTGAGGACTGCTAGCTAAACATGTCGGAAAGAAAAGTCTTAAACaaatacTATCCCCCGGATTTTGATCCATCCAAAATCCCTAAACTGAAACTCCCTAAAGATCGTCAGTATGTGGTTAGATTGATGGCCCCGTTTAACATGAGGTGTAAGACATGTGGAGAGTACATATACAAAGGGAAGAAGTTTAATGCTCGCAAAGAGACGGTACAGAATGAGCTGTATCTGGGGCTGCCCATCTTTcgtttttatattaaatgcacaAGATGTCTGGCAGAAATCACATTTAAGACCGACCCGGAAAACACTGATTACGCTATGGAACATGGTGCGACACGAAACTTTCAAGCTGAGAAGCTGAtcgaagaggaggagaagaaaatccagagggagagagaggaggaggagttaaATAATCCTATGAAGGTTTTGGAGAACCGCACCCGGGACTCGAAGCTGGAGATGGAAGTTTTGGAGAACCTGCAGGAGCTGAAGGAGCTGAATCAGCGGCAGGCTCAGGTGGACTTCGAATCCATGCTTCAGCAGTACAGGGAGCTGGagaagagacagaaggagaaagagcaggaggaggatgagagagaAACCAAAGAAATGCTGGAGAGGGCGCTGGTGAAAAGGCTGAGggactctgactctgactctgactctgatcaGGAGCAAGAAAACGGAAAAGGGCAGCAGAAAAGACACGCTGCTGAGAACCCCACAGACATCCTGACTACACACCAAGAAACGGATGCAAAGGGTGCCACTTCGTCTGGAGTAAAGCGTCAGAAAGTGGAGAGCTGGGAAAAGAGCGTGGGCGGGTTGGGAGGAAGAAGTGCACTGGGGTCACTAGTAGTGAGGAAGAAGCCTGCAGCAACAGTTACAGCACAGCAGCCTGCAGCTGGAACTCAGACTGATGCAAATCCTGCCAAAGCAGCTGCCACTGCAAGCAGCAGCCAAACACCTACAGTTCGGAATGGTTCCTCTCTCAGCCTGCTGGGGGCGTACTCGGACAGCGACGAGAGCAACTCCGACTAGTCCTGTCATGGTGATGGAAACAATGTCTGCTGTTAACTATACAACACGTGCAGGAACAGTCTCAAGAAATCCACTCACAGACTGCTGGTTTTTAGATTGACTTCCAGTGGTGTCTGCTGGAAAAGTAATTCTGTATGATAATATTTGAGAAAAATATATCACTCTGattgtttgtatatttttcatgtgttttgattgattgattaatattAAAGTATAGATAGTCTTTCCGACATGTTTAGCCCATGTTTCAGCTCCTGAGCAGTAACTATAAAAGGGTTGCACAGTGGGTGTTTAGGAAATAACCTTCCTGATGTGTTGATTGGAAGGttctgagttcaaatcccagagaTGCCATGGGGCtttgagcaaggtccttaaccctgGCCAGCACAGCTGTATGCTTGAACTGTAAGTCAcattggataaaagcatctgccctGTGAATAAATGTTCATGTCAATAATTCATGACGAAAGACTCTAGTATCCCCCCATAAAATGTCACCGCTCTCATCTAATATTTTTCACTCATGACACAGTGCCTTCTTTTGTGGAATATCCCACGTCTCAAAGGTTAATATTAGATCAGTATATCCACTTTGTTgcataacacattttatttgatgTGTGTTGCTTTATTGCACAACAAGATTATGCTTCCATTGTGCTGTATAAATCTCAAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379728 lncRNA downstream 106147 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA downstream 133919 14627785 ~ 14632171 (-) True G320635
TU379329 lncRNA downstream 315067 14361947 ~ 14451023 (-) True G320317
TU379346 lncRNA downstream 370177 14391988 ~ 14395913 (-) True G320332
TU379304 lncRNA downstream 447765 14318057 ~ 14318325 (-) True G320294
TU379867 lncRNA upstream 291859 15064126 ~ 15065780 (-) True G320767
XR_003403412.2 lncRNA upstream 323410 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA upstream 323410 15095677 ~ 15104460 (-) False LOC113533367
TU379941 lncRNA upstream 457336 15229603 ~ 15230010 (-) False LOC113533479
TU379997 lncRNA upstream 509168 15281435 ~ 15281638 (-) True G320864
XM_026925514.2 mRNA downstream 1274 14748928 ~ 14764816 (-) False shda
XM_026925515.2 mRNA downstream 1274 14748928 ~ 14764816 (-) False shda
XM_026925513.2 mRNA downstream 1275 14748928 ~ 14764815 (-) False shda
XM_026925516.2 mRNA downstream 1488 14748928 ~ 14764602 (-) False shda
XM_026925517.2 mRNA downstream 1668 14748928 ~ 14764422 (-) True shda
XM_026925745.2 mRNA upstream 35700 14807967 ~ 14818873 (-) True LOC113533545
XM_034314827.1 mRNA upstream 35700 14807967 ~ 14818866 (-) False LOC113533545
XM_026925762.2 mRNA upstream 62635 14834902 ~ 15035981 (-) False LOC113533549
XM_026925759.2 mRNA upstream 62635 14834902 ~ 15035981 (-) False LOC113533549
XM_034297721.1 mRNA upstream 62635 14834902 ~ 15035981 (-) False LOC113533549
TU379789 other downstream 20603 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3217651 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4237840 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5792878 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5811980 8904014 ~ 8954110 (-) False pitrm1
TU379938 other upstream 455205 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 914991 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 914991 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1585307 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1847366 16619633 ~ 16619734 (-) True LOC113533663

Expression Profile