RNA id: XM_026925540.2


Basic Information

Item Value
RNA id XM_026925540.2
length 4050
RNA type mRNA
GC content 0.44
exon number 19
gene id mau2
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16404788 ~ 16419408 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAATTCTCAGCTTAAGAAACTACGTTTTGATGTAACACCATATCATCACACTTAAGAGCTGCCAGGAGGATCGTCCTGATTCCTCCCGATGCCCCACAAGTCTACTGGTGTGCGGAAGTTCCCGTATCCAATCTCGCGAGAATAGGCCAGTATCGCTTAGGCCGcggttgtttttgttgttattgtcgTCAAAATGGCGACTGGCGGAGAGGCCCCGGAGTCCTGGTATCTTGCCCTGCTTGGTTTTGCCGAACATTTTCGCACTTCGAGTCCTCCTAAAATTCGCCTCTGCGTGCACTGTCTCCAGGCTGTATTTCAGTTCAAGCCTCCACAAAGAGTAGAGGCCCGAACGCACCTTCAGCTCGGCTCGGTGCTCTATCACCACACCAAGAACAGCGACCTCGCCCGGAATCATCTGGAGAAAGCGtggTGCATCTCGCAACAAGTCCCCCAGTTTGAAGATGTTAAATTTGAAGCTGCCAGTCTTCTCTCAGAGCTTTATTGCCAACAGAATTTGGTTGATTCTGCTAAGCCTTTACTACGCAAAGCCATCCAGATTTCCCAGCAGACTCCCTACTGGCACTGCAGATTGTTATTCCAACTAGCACAACTGCACACACTAGAGAAGGACTTAGTGTCTGCGTGTGACTTATTGGGTGTAGGTGCTGAATATGCTAGGGTCGTCGGATCAGAATATACCAGAGCTCTGTTTCTTCTGAGTAAAGGGATGTTGCTGCTGATGGAACGTAAGCTACAGGAGGTGCATCCTTTGCTCACATTGTGTGGGCAGATCGTGGAGAACTGGCAGGGAAACCCCATACAGAAGGAATCCCTCCGGGTCTTTTTCCTGGTGCTGCAGGTCACGCATTACCTGGATGCTGGACAGgtgaaaAGCGTGAAGCCGTGTTTAAAGCAACTGCAGCAGTGCATCCAGACCATCTCAACACTCCACGATGATGAGATCTTGCCCAGTAACCCCGCGGACCTCTTCCACTGGCTGCCTAAAGAGCatatgtgtgtgcttgtctACTTGgtcACTGTTATGCACTCGATGCAGGCCGGATACTTGGAGAAGGCGCAGAAGTACACAGACAAAGCTCTAATGCAACTAGAGAAACTAAAGAtgttgGACTGCAGTCCCATCCTCTCGTCATTCCAAGTCATCCTACTGGAGCACATCATCATGTGTCGCTTGGTTACGGGCCACAAAGCGACGGCGCTGCAGGAGATCTCTCAGGTGTGCCAGCTGTGCCAGCAATCTCCTCGTCTGTTCTCCAACCACGCTGCTCAGCTCCATACTCTATTAGGTCTCTACTGTAtttctgtgaactgtatggacAACGCAGAGGCTCAGTTCACTACAGCCTTGCGGCTTACTACACACCAGGAACTGTGGACTTTCATCGTGACCAACCTGGCCAGTGTGTACATTAGAGAGGGCAACAGACACCAAGAGCTTTATAGCCTACTAGAGAGGATAAACCCTGACCACAACTTCCCTGTCAGCTCTCACTGTCTGCGAGCTGCAGCCTTTTATATCCGTGGACTCCTCTCGTTCTTCCAGGGACGCTACAACGAGGCCAAGCGTTTCTTGCGTGAGACTCTAAAGATGTCAAATGCTGAGGATCTGAATCGACTGACCGCATGCTCGCTTGTTCTTCTCGGACACATATTCTATGTTCTGGGAAACCACAGGGAAAGCAACAATATGGTGGTTCCAGCCATGCAGTTGGCCAGCAAGATTCCTGACATGTCTGTTCAgctgtggtcttctgctctgcTTAAAGATCTGAACAAGGCCTGTGGGAACACGATAGATGCTCACGAGGCAGCACAAATGCACCAGAACTTCTCCCAGCAGCTCCTACAGGACCACATAGCTGCCTGCAGCCTGCCTGAACACAACCTCATAAGTTGGACAGATGGACCTCCACCAGTGCAGATCCAAGCTCAGAATGGACCCACAACCAGCCTGGCCAGCCTGCTTTGAATACGCAACAcaatgataaacacacacacacaccctctcactcACTGTGAGCACACAAATTGTACATACAGGTCAGCCTCTGAGCCCTCATGCAcatagatacatacacacacatacattaaaaCTAAAGGAGACAGGACTCCACTGCCTTTGTCCTGCAGATTTTATCTTGTATTCTTCAGATTTTAACTTATTCTTATTGAACTTGTATGATGTTGGGGCAATGAGATGACACTGAGACCTTGGGAACGGTTGGGATATGAGTCACAATGGGCGCGATAATTATTTCACTCCTCATGAATGTGCacacatggagaaaaaaaaaacagagaaaggcTCTACTGGGCAAGAGTTTGGTTTGGAGGCATACAGTCTTATAATTTAGAAAATCTATTTGGTCATTTGACTACCGTTCAACAGAAGATGGAAGGTATCAGTGAATCTcttcatttcagtcatttctCTTCATATCAGTTTAAAACTTTAGTCAAGTTGGCCCGTTCCTCTGTGCGTACTGTATGTTCATGTACAAACTTGATTAGAAGACATGGACTTctatatttttcataattattaaCCTTTTAACTAAATTAACTCCAATACATCATCCATGACCTTAAGCAGTGAATGAAACGTACTGAAGCGTGTGTTGGATTTGCATTGGAACAGTGTGTTCAGCAGGATTCACTAGTTAGCATGCTATCtggtttgatattttttttattttgatcttCACTCTTATCCACGAAGACTTGGTGCaactgcaggttttcattttaaacaatcaAGAGCCATATTTGATCCCAACTGACTTTAAACAACTTTTATTTGTGGCTGCTGACTGTCtcgaatgaaaacctgcagctgTAACAAATCTTTATGCGTAAGATCGAAGACGTCTGGTGCAGATCTGATCAAACTTGGCCTTGACAAATTCAGCCCGAGTAGGACACTCCCCTCATTTTCAGGGGTTGGTATGAGAGTAGACCTAAAGAAAGACACAGTTTGTCATAACAAAAGGCTAATTTTAATATCAAAGCCGAGCTTGTACAGGCAGCTAAGAGCTTGAAGGACATGATGTAAGGAATAATCAGCTACCAACAAAATCCGTCGCTATATTGCATCCTGGTACCCGGAGTCAGTGTCTTTAACGCTAAGCCACGTCTCAAAGTATTGTTTCAGCATCATCAAGAGATTTTTGTCctatttcattgtttatttttttaactacatCTAAAACATGTAACTAAATGCATagtaatcttttcttttttgcaattTCTGTTTTGTGTGGGGTATTTCAAAAAGTATGTATAGATTTTCTCTATTTTGAGCACTGCAGATATTTTAGCAGTATCAAATTTTTATTACCAGTGGCAGTTTGTTAGTTAAGAACATTTTGGCAAAGCTGTTTAGGGGAATATTGTGCTAGGTCCAGAAACaaaggttaattttttttgtctgcaaaGTATTGGCTTTTGGCAAAATTTCTGAAAAGGCAGAAAGAGCACCAGCATACCGTCATAGATCGCTGATCTTTACGTTCGGTTTACGTTTCACTGATATTTATTGCTAAACACTTTTAGCTTGCCTCTTGGTATGTTCCACTCTTGGTATTGGATTTTATTTGAGATGGGTTTAAAAGTGTAAGCAAGAGAGGGCGCTAGAAATGCGACTACCTGTTCTCCATTCACATGATCCTTGGCCTATAGTCATAAATGAACCCTCTTAAGTTGAAGATGGTTGTATCCGGATCTGTCTCCAGTAGCAAACTGATTCCAGATCAGCATTCCTTCATCTTTACACAACTCAAGGCTGGTGAAACTGAAGACCTTTTGTAATACTCTACTAAATATTTCTTAAACAAGATCCCAGAGTTTCCTTTGCGAGACATGATGTCTTTTGTACTGACATGTCACAGTGCTTTTCGTTTTCCCTTTTCTCTTATCCACTGTACAAACCCTGCTgagacagcttttttttttaaggtatttacccccttttctgtagttttaacaaataaatccatttattaaattttgtaAAGTTTGAATATTTA

Function

GO: NA

KEGG:

id description
K11266 MAU2; MAternally affected uncoordination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380634 lncRNA upstream 18265 16386257 ~ 16386523 (+) True G321429
XR_004580325.1 lncRNA upstream 217785 16185620 ~ 16187003 (+) True LOC117599979
TU380437 lncRNA upstream 267184 16135324 ~ 16137604 (+) True G321258
TU380433 lncRNA upstream 273783 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 274104 16130422 ~ 16130684 (+) True G321255
TU380639 lncRNA downstream 16791 16436199 ~ 16446124 (+) True G321434
TU380640 lncRNA downstream 37035 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 174789 16594197 ~ 16600593 (+) True G321454
TU380777 lncRNA downstream 247022 16666430 ~ 16703816 (+) True G321563
TU380811 lncRNA downstream 323486 16742894 ~ 16744115 (+) False LOC117599972
XM_026925598.2 mRNA upstream 221 16395946 ~ 16404567 (+) True sugp1
XM_026925599.2 mRNA upstream 576 16395828 ~ 16404212 (+) False sugp1
XM_026925685.2 mRNA upstream 19567 16376170 ~ 16385221 (+) True rab8a
XM_026925682.2 mRNA upstream 29436 16357577 ~ 16375352 (+) True tpm4b
XM_034314742.1 mRNA downstream 5969 16425377 ~ 16455986 (+) False LOC113533360
XM_034314741.1 mRNA downstream 5969 16425377 ~ 16455986 (+) False LOC113533360
XM_034314739.1 mRNA downstream 5970 16425378 ~ 16455986 (+) False LOC113533360
XM_034314736.1 mRNA downstream 5970 16425378 ~ 16455986 (+) False LOC113533360
XM_034314740.1 mRNA downstream 6226 16425634 ~ 16455986 (+) True LOC113533360
trnag-gcc_20 other upstream 217747 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 219221 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 220646 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 272424 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 284755 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 432037 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1059426 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 1059426 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 1151241 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1807154 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile