RNA id: XM_026925561.2


Basic Information

Item Value
RNA id XM_026925561.2
length 3413
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC113533414
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15650621 ~ 15658676 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggctgctggAGACAACGGCGGTCGGGCCCCGTGTTTAAATTTCCCCTCTCCCGGTCCGCTGGGTAACAGTCAGCCGAGCAACAGTACCTACACTCTGGCAGCAAGTAACGGAGGATCCATCGGGGCGACCGGAAGCTCACAGAGCGCGACGAGACGCTCGAACCCTCAGCCAGGGCCTAACGGCTCCGAATGCAGCGGTGTCGCCTCTGGGCTTCCGCCGAATATGCGCAACTCTCTCCCGCAGGCCATGGCTCAGGGCTCGGTGATAGCGGGGGCGGTCGGGGGGTCAATGGCGGCCGCAGTGGCGTCGAACATGACCGGACCAGCGTCAAATTCAGGGCCGGCTCCTGCGACCCACTCCTCACTTTCTGCCCCTCCGGCTGCAGCTGCGGTTCTGGTTTACCGAGAGCCCGTGTATAACTGGCAAGCAACAAAAAGTACTGTGAAGGAAAGGTTTGCATTTCTCTTCAATAACGAGGTGCTAAGCGACGTTCACTTTCTGGTGGGGAAAGGGATGGGAGTACAGCGCATACCTGCTCACAGGTTTGTTTTGGCAGTTGGCAGTGCTGTATTTGATGCCATGTTTAACGGAGGCATGGCCACCACCTCCACAGAGATCGAGTTGCCAGATGTAGAGCCTGCTGCTTTTCTGGCTTTGCTCAAGTTCCTATACTCGGATGAAGTTCAAATCGGGCCCGAGACCGTCATGACCACTCTGTACACGGCAAAGAAATACGCAGTCCCGGCGCTGGAGGCTCACTGTGTGGAGTTCCTGAAGAAGAACCTGCGGGCTGACAACGCCTTCATGCTCCTCACACAGGCCAGGCTTTTTGATGAACCTCAGCTGGCCAGTCTGTGCCTCGAGAACATTGACAAGAACACGGGTGATGCTCTGGCTGCAGAAGGCTTCACAGATATAGATCTGGACACACTTGTAGCTGTGCTGGAGCGGGACACACTCGGGGTGCGGGAGGTTCGGTTGTTTGGAGCGGCGGTGCGTTGGGCCGAGGCAGAGGCTCACCGGCAGCAGCTGCAGCCCACACCCGAGAACAAGAGGCGCGTTCTGGGGAAAGCCCTCACCCTCATCCGCTTTCCTCTAATGACCATAGAGGAGTTTGCAGCAGGTCCTGCTCAGTCAGGCATTCTGACAGACAGGGAGGTGGTCAGTCTGTTCCTCCACTTCACAGTGAACCCCAAACCGCGAGTGGAGTTCATCGACCGGCCCCGCTGCTGTCTGCGTGGGAAAGAGTGCAGCATCACGCGCTTCGCCCAGGTGGAGAGCCGCTGGGGCTACAGTGGGACCAGCGACCGTATCCGGTTCTGTGTAAACCGCAGGATTTTTGTTGTGGGTTTTGGACTGTATGGGTCTATACACGGACCCACAGACTATCAGGTCAACATACAGAtcattcacacagacagtaatacAGTCCTTGGTCAGAATGACACGGGTTTCAGTTGTGACGGGTCATCGAGCACCTTCAGGGTCATGTTCAAAGAGCCGGTGGAGGTTTTGCCCAATGTAAACTACACAGCCTGCGCAACTCTTAAGGGTCCAGACTCCCACTATGGCACCAAAGGCATGAGGAAGGTTACACATGAGTCCTCAGGATCCGGCACCAAAACCTGCTTCACCTTCTGCTACGCTGCTGGCAACAACAACGGCACTTCCGTCGAAGATGGACAGATCCCTGAGGTCATCTTCTACACATAAAGACCATTGAGTTCTTCCATATTCCAGGAGTTTTGGGCTGTATTACAAATAGCTCACTGATGTACTTCCAGTTTTGTTAACTAGTCTATAACTGGAAGAGCTGAACTTGAGTGAGTAATGTAGTGGACGGCGGAGATGTTTAGAGTCCTACACCTTCACCTGCACTTTCTGAAAAGCTGCACAGAGTTAATCTGCGTGCTTACTGATTGAAGGAGCCTACTTTGTCCATGCTGATTATAATAGAACCCATAGGCTGTGAACTATTCACCAGCAGACTGACCTTGATGCTGTTTAACTGGATTGAAGAGCTATTATTGCATTTCCTGTCTTTAACAGCTCGTTCAGCATCTCTTAAGTAGGGACAAAACTGAGGAAAAGGTTTTCTTTATGAGAACTGGATTAATCACAACTCCATTTATGCCAGCAGGGGAAGTGAGATCAGGCTCTGAAGCATTTCTAGGATGCAGGGGAATTCTGCCTGCTCAGGTTCCCTTATGTTCTGTGCCAAAATTGTACTTAGAATACCTCCTTCACAGGAAGTTAACTAGTGCTCAATGATGTTCAGTTGTAACACTCAGAATCATCTTTAAGCCAGGCATACAGCTCTGTAGATCACCGTAGGCTGTTGTGAAAATTAGCACACGCAGGGGTCCTTCAAGGGCGGAGCATTGACCCTCTGCTTTTGTCGGGCCTAAAATATTAAATCCTCATCTCAGTGGTCACTCACTTATCATATAATATAGTGAGTTCTCATAGGCCATGGTAAAAACAACTGTTTGAATAGACTGTTGCATAATCAGCTGTTAAACTGTCTTCTCGTGGGTTGCATGTCACTTACGACGTGAAATGTCACAAACGTAAAGAGAAATTTGAGTTTTTAAGGATGTCCAACAAATTCATTGTTCATCAGTGCTGAAGAAGATTATATGGCTCAATTTCTTGCCTACTTTACATCATAAACAACAGACTATATTTATACTGGATCCATGTACTTTTGGTCATTCTGTGTTCATGTCGGTAAcagaaattagaaaaataaaatacaaatggtTCGTTAAAAATTGTTTCTAAATTTAGGCTGgattgtgtttctttttcttttggtaAGAAATGAACATTTCTGTTACTGAACACGAATATAGAATGACCAAATGCTGGTTAACCAGATTCTAGTCCACCACCCACTGTCACCTACTAGACCAAGCCTCTCTTGCTCATCCTTAACACATCTGTAAGATACTACAATAGCCCATGTgtgtttgataaaaaaaaaaactgacggGTACCTGAACACCACGCAGCACAGACGGCGTGTAAGGGACTGTTCCAGCACTAATCATTAATGTAGCTCGACAGGTTCATGTTTAGATCTATTACTTTTCTTTTGCCTTGTTTGGTGAGATTAAATCAGGGTTTTCATTTCTATATAACCAGCTTCAAACTGTAAAGTACTGATATCACCTCATATGTGTGTACAATGctattaaataaaaaggttGTTAAATGCAAGTGTTATTCATTTTCTGACAGCTAACGTGTTCATGATGACCTGCTCATGAACAGAGGGACACAGTGAACCTAAACTGCACAGAAAAGGGTttgatttaattgtttaatttccTGGGTGAAGATAAATGTTTGGTTTGGAAGCTGGACTGAAAGCAGCATCATAAATAAAGCTGgtctgtatttaaaaa

Function

GO: NA

KEGG:

id description
K10477 BTBD1_2; BTB/POZ domain-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380131 lncRNA upstream 33498 15616911 ~ 15617123 (+) True G320992
TU380130 lncRNA upstream 34403 15615997 ~ 15616218 (+) True G320991
TU380127 lncRNA upstream 37080 15613194 ~ 15613541 (+) True G320988
TU380120 lncRNA upstream 54395 15596024 ~ 15596226 (+) True G320981
TU380114 lncRNA upstream 79532 15570694 ~ 15571089 (+) True G320977
XR_004576905.1 lncRNA downstream 24395 15683071 ~ 15704584 (+) True LOC117600003
TU380377 lncRNA downstream 363810 16022486 ~ 16023068 (+) True G321203
TU380389 lncRNA downstream 383118 16041794 ~ 16043738 (+) True G321214
TU380392 lncRNA downstream 387470 16046146 ~ 16046482 (+) True G321217
TU380395 lncRNA downstream 390418 16049094 ~ 16049308 (+) True G321220
XM_026925249.2 mRNA upstream 64338 15580021 ~ 15586283 (+) True LOC113533252
XM_026925252.2 mRNA upstream 72543 15571964 ~ 15578078 (+) True mbd3a
XM_026925253.2 mRNA upstream 72543 15571966 ~ 15578078 (+) False mbd3a
XM_026925254.2 mRNA upstream 72543 15571966 ~ 15578078 (+) False mbd3a
XM_026925255.2 mRNA upstream 72543 15571967 ~ 15578078 (+) False mbd3a
XM_026925001.2 mRNA downstream 1300 15659976 ~ 15666070 (+) True armc6
XM_026925405.2 mRNA downstream 9077 15667753 ~ 15682276 (+) True slc25a42
XM_034297740.1 mRNA downstream 139515 15798191 ~ 15842389 (+) True LOC113533481
XM_026925305.2 mRNA downstream 204471 15863147 ~ 15890456 (+) True sbno2a
XM_034314748.1 mRNA downstream 235325 15894001 ~ 15923289 (+) True arhgap45a
TU379509 other upstream 821850 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 1754956 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other upstream 1754956 13837433 ~ 13895665 (+) False LOC113533270
TU378000 other upstream 2877754 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 4077724 11572827 ~ 11572897 (+) True trnag-ccc_6
TU380255 other downstream 210340 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 271276 15929952 ~ 15936768 (+) False gpx4b
XR_004580319.1 other downstream 441857 16100533 ~ 16111089 (+) False jund
XR_003403417.2 other downstream 453360 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380434 other downstream 472659 16131335 ~ 16132364 (+) True G321257

Expression Profile