RNA id: XM_026925572.2


Basic Information

Item Value
RNA id XM_026925572.2
length 2857
RNA type mRNA
GC content 0.42
exon number 6
gene id mpz
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10042888 ~ 10053540 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTGAGTCTGCACACACTTGCCCGGGTGCCCCTCAACCTCACTCCCTCCATCCCTACATTTTTCCTCCACTTTCCTCATCTTTGATCCTCTGCTTTCTGGTCTTCCACAAGCTGTCCAGCAGAAACATCAGACAGAAAGCATGCTAACTCTACTGGTGCTCACATCTGTGGTGCTGTTCAGTGCAGctccCCAGTCAGAGGCTATAGTGGTGTATACTGGCTGGGAGAGGCATGCTTTGGTAGGCTCGGATATCCGGCTTTCCTGCTCTTTCTTCTCATGGCGATGGACTTCTGATGATGTCACCTTCTCATGGAGCTACAGGCCAGATGGGGCGAAAGACAGCATCTCTattttCCACTACACAAATGGAGTTCCCTATGTGGACAATAAAGGGCCATTCCGGGACCGCCTGGAGTTTGTGGGCAACCCAGCTCGTCGCGATGGCTCTATCCTTATCCGAAATCTGGACTTTGCTGACAATGGAACCTTCACCTGTGATGCCAAGAACCCTCCAGACATAGTGGGCCGACCCTCCAGCGTACGACTTCTGGTATTTGAGAAAATCCCAATTCAGGCCGGCGTGATCACAGGTGCGATTATCGGGGTGGTTTTGGGTTTGCTGATCCTGGTGGTGGCCATCTACTATCTGATGCGCTTCTTGGTGGCCCGACGTGTCTTCAGCTTGAGTGTGAGCAAACATGGCAAGAAAGGCAAAGGGAAAGAGGGAGCCCAGCAAAAACAGGCTGGTCCTTCAAAGTAGCCATGCCTAcccttttttatattcattgctTAAGGACTAAACAAAAGAACGTAGGCCAAACCCACGCAGAAAATGTACACGTAGATGCATGATCCAATTCTagaaatcagaatcagagaAAAAGTACTGCCATCAAAAACTTTCACATACCCGTCATGATATTTTAGAACAATTTATACTCCAGAGCACTGTTCCTCACCATGTACGCACGAGGCTAGTAGCGGCCCCTGGAGGGCAACCTAGCGGAGACTGAGTGAAATCCCCAACATAGACACAAGTCTctaaaatatcataaaaatgtgttttaatgatcAACATGTTGTGTTTCATATAACTTCACCACTTGGTGGAACTACTTCAATTTTAGACTAGAGGTCAGCTGTGTTTCAGTAACATGCTCacataaaatgcataaagtgAAACTGGACCAAGATTACTTCTACCTATCCACCTTTTAAACTGAACTGTTGCCCcctgactctttttttttgggttggTTTGCCCCTTCTCTGAAATTTAGTGAAGAACACTGCTCTAGTACAACATCCATCTGCAGGACAAACTTTAAATCCATGCAGTGTACAGCTGCTACACCCATGACTTaggaaggagtgtgtgtttgcatgtgtgtgctgctctgactgTAGTGACTGAAACCCTCAGAATGAAGTTGATACTGCTAGCAGagtttgtgcacacacacaaatatgcacgTGCttgcgcacgcacacacgcgcacacacacacacacgagagagtGGGGACTGCAACAGAGtcactgtataataaaacacaaaagacaaaacTATGTTAATTCAAACAGAATCAGCCTAATCTTTTGCctccccactctctctctccctctttcctctatttcattttcattttctttttcactgaCTCAGTCTTCTTTGACCTGAGgtgagtgtttatttttttccccttcctctcAACACATTGCACACCATTTCAAGCTACCATGTTGTATTTCCATTACTGTTCCTTTCATAAAACCTCCATTCTTCCACTCCTTTACCGTCTTTCATCCATCTCTCGCTCTTCTTGATTTGAACAATACTCTGTTCATTCCTGCCACCTCCTGCCCACAACAAGAAAACTCTCCTTTGGCCTTCTGATGATGCCAAAGCCAAAATGCTAATATAGTTGCCTAGCTCTCTGCTGACTGCGAACGATGAATTTCTTTTCCcatgtttgtgtgcatatgtTTAGTGCAACATGTCTATAACCTGTCAAAATGTTAAGAGAACAAAACATTGAAGCAAAAATGGATTCTGTCTTTGTACGTACCTAATGCTAGTTATGACATGCCGTGCAATAGTTTACTGGACCTGTGTGGGAAACAGagatgtaatttgtatttaatgatatttatatatgcaTTTTTGACTGACATGGTAGGATtcatatggcttttttttttatcacagtcTTAGTATCCTAGGCTATAGGAAGTAATGGTGTGGAAACCAGCAAGGCAAGAAGTCATTAAGTTAGTGATTGCATAAAATGTTATAACctgcataaaatatttataatctggAACAAGGACTTGAGGGGAATTCACATTGGAGTGGAACGTCAAGCCAAAGTCCATTGAACATCACAATCGCAAGATATGATTCTCCCACCAAGTCTTCGTCCCTCAAACACACTGTGAGCTATGGATGGGCTTGGATTCGGAACATAGTAGGGGTTAAGTGTGTAAGACAACTGTAAGGTGCAACTAGGACGTGTAGGGTTGCTGCACACTTGAGTGAAAGTCAGATGCTTTTTATGCATTTCTGAATAGATATGGAACAGCCACCTGCTTCCCTCCATTAAACCTACATTAAAATATGGAATCATTTCCATGTTGTATGTATCATGTACTTGTATATGTATTAGTGAGGACTTCTGATAACTCTCCCTTTCCTCAAATGCATTTTACAGTTTCTAATCCTTTATATGTTTAATTTGGTGTTAACCTCACTAGGCTATTAGAGTTTATTGTTATGTGAAATGTATtgtaaaaaggaaataaagctTGAGTTAAAATCAATCAtttaagaaacaaataaattcagAGGTCATAtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376171 lncRNA upstream 102651 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 163132 9878915 ~ 9879756 (+) True G317621
TU376155 lncRNA upstream 167068 9874996 ~ 9875820 (+) True G317618
TU376060 lncRNA upstream 223423 9819266 ~ 9819465 (+) True G317529
TU376057 lncRNA upstream 227231 9815277 ~ 9815657 (+) True G317526
TU376260 lncRNA downstream 52226 10105766 ~ 10106921 (+) True G317703
TU376326 lncRNA downstream 103737 10157277 ~ 10157530 (+) True G317754
TU376333 lncRNA downstream 132766 10186306 ~ 10187126 (+) True G317761
TU376532 lncRNA downstream 450623 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 464048 10517588 ~ 10520208 (+) True LOC117599937
XM_026925529.2 mRNA upstream 8873 10003656 ~ 10034015 (+) True lig1
XM_026925090.2 mRNA upstream 53844 9981186 ~ 9989044 (+) True LOC113533165
XM_026925733.2 mRNA upstream 64972 9958993 ~ 9977916 (+) True pip4p1a
XM_026925101.2 mRNA upstream 90568 9943753 ~ 9952320 (+) True dnaaf6
XM_034297746.1 mRNA upstream 181742 9829382 ~ 9861146 (+) False fndc7a
XM_026925209.2 mRNA downstream 7686 10061226 ~ 10130722 (+) True atp1a2a
XM_026925414.2 mRNA downstream 120280 10173820 ~ 10186067 (+) True sdhc
XM_026925460.2 mRNA downstream 142568 10196108 ~ 10288224 (+) True cadm3
XM_026925461.2 mRNA downstream 142568 10196108 ~ 10288224 (+) False cadm3
XM_026925462.2 mRNA downstream 142569 10196109 ~ 10288224 (+) False cadm3
TU376185 other upstream 64987 9959329 ~ 9977901 (+) False pip4p1a
TU375892 other upstream 627724 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1230068 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 1773690 8268709 ~ 8269198 (+) True G316745
TU375134 other upstream 1778827 8263339 ~ 8264061 (+) True G316744
trnar-ucu_12 other downstream 134211 10187751 ~ 10187824 (+) True trnar-ucu_12
XR_004580322.1 other downstream 482891 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 482891 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 510295 10563835 ~ 10568896 (+) False eif4e2
XR_004580315.1 other downstream 1346344 11399884 ~ 11461068 (+) False per2

Expression Profile