RNA id: XM_026925606.2


Basic Information

Item Value
RNA id XM_026925606.2
length 3103
RNA type mRNA
GC content 0.48
exon number 3
gene id si:ch211-178n15.1
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16112035 ~ 16120033 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAGTGTGGAATCCTGGCTGTGTTTAATTGGCGAGTGGCAGGCGGGCTTGGGAGACAGAGCAGGAGTGTGGGAGATCTAAGGAAGCAATTGGGACTCACATGGAGAGGCAACTGCTCTCACTGGCTTTACGAGCTGCGACTTTGACTTTCTgaaagatagaaaaagaaacGGGTAAAGGGAGGAAGAAACTCAACAGAGAGGCGGAGAACCAGTGAGCTAGAGTTTGGGAGGGGGTGAATTGACACAGAGAATTTTTTACATAGTGAAGAGAGAAGGGTTAAGGATatggaaagaaaggaagggagagatagagagaggaaatgacagAAGGAGCAACAAAGTGCAAACAGAATGAAGGATAGGTACAGGAAAGGCTGCAATGGAGTGAGAGAATAGGGGGGGGGTAGGAGAGAAAGAGGCCCACCGCTGGAGAAAGGGCAACAGCACTGACTGCATACGGGAAATGACAGAAgttgaggagagagagggagagagggaaagagaaagagagaaaagagggaaaacaaGGGGAAGTTAGAAAAGCAAGGAAGGGGGAGGTGAGTCttgaaagggagagaaagaaaaaagtggtgGAGGAGAAGTTGAAAGAAACAGCATGTGAGAAAAGGGAATAGAATGGGGAAAAGGACAGAAACACGGTAGAGGAGTGAGAGGAAAAGACCTACGCAGATGAGAAAAACAGCCTTAGTGAATGGCCTGGgtggggaaagagagaggaggtaACTGGTTGTTTTGTAAGTCGTCAGCCTGGGTGTCTTTTAGTCTCCTACTGCTATGCACTCAGAGAAGGCGGCAAAAGGACAACGTGCCCTCCAACCAGCCAAGGACTACTGCCAACTATGCCTACACCAGGGACCAACGTTAACACATCACAGGCAGGAGCTTGGTGATGGGCAATGCCCACCTCTGGAGCCCAATCTAAGGTCACACGTGTGGAGGGAAGACTTGCCTCTACCCTTTCCACTTGATCTGGAAAAACTTGAGGACAGGACGGGGAACCATAACCATCATGACCTGCAGAGACGGCAAGTCTACTTGGGGCCAAGCCACTATACTGTGTCTGAGAGGTGCAGCCCACCATGCTACTTGTGGAGGGAGGTGAGGGTACCTAGATGGGACCCCCAGCTTCACTCATCTACATGTGTGCGGGAGAGATCAGCACTGGCACATCTTGGACAGGAAGTCGCTGATGAGCGAGTGGCAGGCAGGCTAGGGAGACATAGTGACTGTGGCTGTGGGAGGGAATGGTACCATCATGAGCTGCCACACCCCCTCAATGGTGGCCCCATGCTGGCAAAGGTCAGGAGCCAGTGGTACCTCAGGGAAGCTCGGAATGTGTCAGAGGAGCATCACTTGTACTGCGTGAGCGAGAACTATCAGCAGAATACACATCTAAGAGCACTAGAATGGGACAATAGACATAAATTTGGATACAATGAGCACTGTGAAAGGAGGCATGTTACTTTTGAGGGTCATGATGATAGGCACAGCATAGAGATTAATGGACCAACCAGTCCTATCAAGAACCACTGTAATGGAGCTAAGGCGTTCTTTTCAACTGAGGTTCCCCAGAGCAAATTTGCAGTCTCCAAGACATTGCGACCTAAGCTGCCAGTGAGTGGAATCCATGATGGAGAGACCGAACTGTGTCAAGCAGACAGGGCAGAGGTTGGGGGGAGCCGGAGTATCCACAGGAAGAGCCAGGGAACAGTGCGTGAGCAGATCAAACAAGTGGTGACGGAGTTAGAGGATGTGCTCAGTGGTCTCAAACAGGTTCAAATGGAGATGAAAGAGGTGGTCCAACAGATTGATGTTCTGACTTCCAACATTGACCTGGGCGAGGAGGAGCAAGGACCATTCAATGGTCTGCCACAGGAATCCATGCACCAAGCCAATCGTATTGGAGTTGTGGCACTTGTCCATAATGCAAACAGAGATGCAGAACCACTGCAAAGAGACAGCACACATGTTGGTGTCAAATCACAGACCACTCGTTTCCTATCAGACCATAGCTTGGCCGTGGTGATTTCCACTTGCCCTGACAGTCATCCCACCACAAAGAGCCACGCAAACCCATCCTCCCGCGTTCCTGGTCTGGTAACTGTTGAGTCTGCAGACAGCAGCCAGATGAATCATACGTCTGCTCTGGAGCTTCAGAAGACAAGGAGCACTGCCAATGGAGACTGTCTGCGAGCCAGACCTCCCAGAGCCAAAGTCAAAGAGCTGCAGCATCCAAGAAGCAGAACAGATCATACAAAGAATCTCGACCCCCCTTATCCTCTAGCACCGATTAGCTTGGCTAAAACTCAGAGACCCCCACCGTACCCACAAAATGGACTGGTTAAAGTACCCCCAAAGGATTcaaatgtcctgaaaacaccTCCGTACCCTGGAAAACCGAAACAGCTAACCTCCACCATGGTGTAAAGgGATGCCACAAAGAAGAGATGCATCTAACAAGCAGAGCAATGATGTCTTACTAGAACTGAGAGTATTTCCCATGGAAAGCACTAGAAATGgcctgtccttctctctctctctctctctctctctctctctctgtctctctctccaatcCTGACTGCACTACATCCGGCAGAACAAGCTGCCCTTTTTGCCATACTTGTGAACCAGCCTCTGAGTTTTTGCCCCTTAAAGGTAGCGCTGCAGAGGAATAAGCTGCTcctaaactggaaaaaaaaaagtctggacTCCCACATATTATGCAACATATTCCCAAAGCTCGCCTGGGATTCGAAGCCTGTGAGTGGACTGTTCAGATGACCAAAGAGAATTGAAAgtcttttattattctttattattggTTAAATGTTTAAGAGCAAAAAGCTACagtgtaaaaggattatattcAACCTGTGTCTCTGCATCAGTCTGTAAACCCTATCCATTATATTACAGTTAGTTCATGAGTTATTTAAAGCCAATATAAGGCATTTAGTTTTGTATTTAAGCTGCATCATTGATATATGCTGTCCAGAAGAGGGCGCTACAGTCCATAAAAGTGTCTCTGAACTTTTATGACGctcacaggaaataaaaaaggagacaTTTGAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380423 lncRNA upstream 13034 16098615 ~ 16099001 (+) True G321247
TU380422 lncRNA upstream 14644 16096253 ~ 16097391 (+) True G321246
TU380421 lncRNA upstream 15806 16095903 ~ 16096229 (+) True G321245
TU380416 lncRNA upstream 18211 16091596 ~ 16093824 (+) True G321241
TU380414 lncRNA upstream 21636 16089606 ~ 16090399 (+) True G321239
TU380430 lncRNA downstream 9168 16129201 ~ 16129800 (+) True G321253
TU380431 lncRNA downstream 9916 16129949 ~ 16130269 (+) True G321254
TU380432 lncRNA downstream 10389 16130422 ~ 16130684 (+) True G321255
TU380433 lncRNA downstream 10697 16130730 ~ 16131005 (+) True G321256
TU380437 lncRNA downstream 15291 16135324 ~ 16137604 (+) True G321258
XM_026925364.2 mRNA upstream 9593 16100533 ~ 16102442 (+) True jund
XM_026925672.2 mRNA upstream 70297 16039835 ~ 16041738 (+) True uba52
XM_034314914.1 mRNA upstream 73855 16028370 ~ 16038180 (+) True cers4b
XM_026925779.2 mRNA upstream 112595 15992220 ~ 15999440 (+) True rab11bb
XM_034314824.1 mRNA upstream 127450 15938895 ~ 15984585 (+) False pip5k1cb
XM_026925885.2 mRNA downstream 42421 16162454 ~ 16167346 (+) True cplx4c
XM_026925384.2 mRNA downstream 54537 16174570 ~ 16180499 (+) True rx2
XM_026925383.2 mRNA downstream 67956 16187989 ~ 16193122 (+) True calr3b
XM_026925167.2 mRNA downstream 76891 16196924 ~ 16223330 (+) True eps15l1b
XM_026925172.2 mRNA downstream 76891 16196924 ~ 16223330 (+) False eps15l1b
XR_004580319.1 other upstream 946 16100533 ~ 16111089 (+) False jund
TU380359 other upstream 175267 15929952 ~ 15936768 (+) False gpx4b
TU380255 other upstream 241040 15869016 ~ 15870995 (+) True G321088
TU379509 other upstream 1283264 14827265 ~ 14828771 (+) False ly97.3
XR_004580321.1 other upstream 2216370 13837433 ~ 13895665 (+) False LOC113533270
TU380434 other downstream 11302 16131335 ~ 16132364 (+) True G321257
trnag-gcc_18 other downstream 64039 16184072 ~ 16184142 (+) True trnag-gcc_18
trnag-gcc_19 other downstream 65464 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_20 other downstream 66938 16186971 ~ 16187041 (+) True trnag-gcc_20
TU380835 other downstream 731412 16851445 ~ 16852424 (+) False LOC117599970

Expression Profile