RNA id: XM_034314620.1


Basic Information

Item Value
RNA id XM_034314620.1
length 2148
RNA type mRNA
GC content 0.45
exon number 11
gene id chrng
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10584518 ~ 10596849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacatgttaCCAAAATGCAGGAGATTCCAATGTGGCCTCCAACTGCAGTGAAATACActgcgctctgtgtgtgtgacagctgACAATGCAGGGATCATCAGTGGAGAGGATTAATAATAGTAGTCGTTCTGAAAATAACACCAAGACAAAAACCACACCTATTATCCTGCAAATAAGTGCTGTATACAGAGAGAAGAGGCAAATGCTCATTGTCACTGCACAGTCATGACTAAGCGCCCTGTCCCAGCTTTGTGTGTATGGACATGGACACTTTTGAGCCTCATCCCCTCAGAATGAAAAAGAGGAGACACTGACCACATGTGTTTGGGTAGAGATGCAGTGGTATGACTATAGGCTCAGGTGGGCTGACAGGCCAGGGTTTGAAGCATATGAGAACATCACAGGCACACGGATTCCCTCAAAAGCCATCTGGCTTCCTGATATTATACTGGAGAACAAtgttgatGGGCATTTTGAGATCACACTCTACACCAATGCTCTGATAGACCCATATGGTATGGTGTACTGGCTTCCCCCCGCAATCTACCGCAGTGCCTGTGCAGTCAAAGTCAACTATTTCCCCTTTGACTGGCAAAACTGCAGCATGGTATTCAGGTCTCAGACGTACAGTGCTAATGAGATTGAGCTGAAACTGACGAATGAGGAAAACACCGTAGTGGAATGGATTGAGATCGACCCCGAAGCTTTCACAGAGAATGGTGAATGGGTAATTAAGCATCGGCCAGCTAAGAAGGTGGTGAACGAGAAGTACAGCCGAGATGAGCTGGACTACCAGGAGATTatcttcttcctcatcatccAAAGAAAGCCACTTTTctacatcatcaacatcattgTGCCCTGTgtgctcttctcttctctcgGACTGCTGGTCTACTTCCTGCCAGCTAAAGcTGGAGGACAGAAATGTACCATGTCCATCACTATCCTGCTTGCACAGACTGTATTCCTCTTCCTCATCGCAAAGAAAGTTCCAGAAACCTCTCAGGCTGTTCCCCTGATTGGCAAATATTTGATGTTTGTGATGTCTGTGACTGCAATCACAGTGATGAACTGTGTAGTAGTTTTGAATGTCTCTCTGCGAACTCCCAACACACACCTATTAACCAATAAAGTCAGGAAGGTACTGTTAAACATTTTTCCTCGGGTGCTGGGGATGAGGATGCAGCGCTGGACACCACATAGGGTACTGAATGCAGATGGCATAACAAACAAATCTACTGTCCCTCTGAGGAGAAACAGCTCACTAGGACTAATTGTGAAGGCGGATGAGTACATGCTGAAGACGGCACGCTCTGAGCTGATGTTCAgcaagctgaaagagagaggcGGGCTCATGAGGAGTGCCCTGGAGAAGATCCGGAACAGCCTGGAGGAAGACACGGTCCAGGATTTGACTTGGGGTCTGGCCATGGCGTCACCAGAGTTGCAGCAGTGTGTAGCTTCCTGCAAACACATCGCTGAGAGCACCAAACAGCACAATGACTTCCAGAAAGAGAATGAGGAGTGGTTCCTGGTTGCCCGAGTGATTGAcagactctgcttcatcaccaTGGCCTTGCTGTTTATGCTGGGCACCATCGGAATCTTCCTCATGGGACATTTTAACCAAGCTCCAGCACTTCCATTTCCTGGAGACCCCAAAAGATATCTCCCTGAGATATTCACCGCAAACATCACAGGACAGCATTGACTAACTTGGGGTTGGGGTACTAGCATATTCATCTTGGACTTAACTCCATCACCATGAGAGAAAAGCTTACTTCAGCTTCTTAAATACAAAAAGAGGTGCTTTGTGCTTGTCCTAAAATAATTTTGAGTCATCCTTGCTGATTAtttgttgctgattattttgtactgtattactgtattatatCATGACTGGGCCACAAAATCCCTGTTTAGGCTGAAATGCTTTTGTGTGGTATTGCCTACATTTGTGTTCTAACAAGGAGTTACTGTTTAGTATAAGTCACTTCAGAACTCAACAAAGTAAACCATCTTTTTCCTAGTAATAATCAGATGTATCTATGGCTGTCCTTATCTTACTAGTAGACAATTTGATACAAGTGTTATGTGTGGATTTAGcatagttttaataaaatgaactgtagtttttgaatattt

Function

GO:

id name namespace
GO:0007271 synaptic transmission, cholinergic biological_process
GO:0006811 ion transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0030054 cell junction cellular_component
GO:0015464 acetylcholine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376575 lncRNA downstream 15614 10567748 ~ 10568905 (-) True G317976
TU376576 lncRNA downstream 21991 10562367 ~ 10562528 (-) True G317977
TU376550 lncRNA downstream 58045 10526265 ~ 10526474 (-) True G317953
TU376540 lncRNA downstream 62091 10520613 ~ 10522428 (-) True G317943
TU376534 lncRNA downstream 64256 10518471 ~ 10520263 (-) True G317941
TU376759 lncRNA upstream 126059 10722906 ~ 10723111 (-) True G318127
TU376760 lncRNA upstream 126301 10723148 ~ 10724215 (-) True G318128
TU376845 lncRNA upstream 244821 10841668 ~ 10843291 (-) True G318198
TU376849 lncRNA upstream 248876 10845723 ~ 10847783 (-) True G318202
TU376850 lncRNA upstream 248876 10845723 ~ 10847783 (-) False G318202
XM_026925752.2 mRNA downstream 353 10570185 ~ 10584166 (-) True LOC113533548
XM_026925864.2 mRNA downstream 56240 10527350 ~ 10528279 (-) True ccl20a.3
XM_026924978.2 mRNA downstream 123893 10393883 ~ 10460626 (-) False camsap2b
XM_034314627.1 mRNA upstream 4851 10601698 ~ 10607930 (-) True LOC113533461
XM_026925704.2 mRNA upstream 14757 10611604 ~ 10632678 (-) True LOC113533519
XM_034314601.1 mRNA upstream 37714 10634561 ~ 10640785 (-) True LOC113533482
XM_026925400.2 mRNA upstream 107614 10704461 ~ 10711641 (-) True alg3
XM_034314589.1 mRNA upstream 107614 10704461 ~ 10711374 (-) False alg3
TU376553 other downstream 56269 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 1611307 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 1630409 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 1698810 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2095890 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 951521 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 4135065 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4630625 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 5090411 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 5090411 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile