RNA id: XM_026925636.2


Basic Information

Item Value
RNA id XM_026925636.2
length 3408
RNA type mRNA
GC content 0.44
exon number 9
gene id gpc5c
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12635057 ~ 12722764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagcataCTCCACTCTGCAGTCTCAGACAACTCAGAAGTGACCCACACCAGTCTGCAGCTCTCTGCAGTTCTGTCCCGGTCGCAGAAAAACAGTGAATAATGTGATAAACACACCAGGGAAGAGGAGGATCGCGTGTCGTTTATGGTTTTCTTCTTTGCGTTTGGCTGCGATTTTGGGTTTCGCGCCGTCTCCGAGCGATTCGCGCAGACCTCTCCTCAAGAGATGCTGCCATGTCCCGAGGGCTGTTCCCGCGAGTGAACGTGTGCTGGGTCGCGGCGCTGCTGCTCGCGCACCTGGCCGTGGCGTCCGCCGCGCGCGCGCACACCTGCAGCGAGGTGAAAACGGCTTTCCAGCTGCGCCAGATCGGCCCGCTCAAGTGGGTACCGGAAGCACCTGCCACAGATGTGAACCTGTTGGTGTGTAAGCATGCTGGACCATCCTGCTGTACACGTAAGATGGAGGAGAGCTACAAAGTTGCAGCGGTGAGGGATACTGTGCAGAATATCAGGTCATACAGCTTCGAACTCAAATACCTGCTCTTGGGCCATGCTGCTGCCTTCCAGgATACGTACCAGTCTCTGTTCACTTTCTCCCAAGGTCACCTGATCTCTCTTTTTGAGAGCACCTACACCTCCCTGTCTTCTAGAATCGCTCCCCATGTCACTTCCCTCTTCTCCAGTCTTTCCAACTTCATCCAGGACACCTCCAACATTTCTGTGGATGCTACTGTCTACAGCTTCTATGACCACCTCTTCCCAATAGTCCACAACCACATCATCAAGCCAGGCATTGCTGAGGATAACAACCTCTCTGAATGCCTCCGTGCCACTCGCCAGGATGTGAATCCGTTTGGTCATCATGCTCAGGCCATGGTCGAGGAGTTGGCAGGCGCCATGCAGGCAGCCAGGGCTTTAACAAGGGCATTTTCCATGGGTGAAGACTTGATGAATGTCACAGAAATGGCCTCTCTGACCAGCGAGTGCGCCAAAGCACTTCTGAAGATGCAGTACTGCCCACATTGCCAAGGCTTAACCCTCATACGTCCTTGTCCTGAGTTCTGCCTCAATGTTATGCGTGGATGCCTGGCGAATGTGGCAGAGCTAGATATGCCATGGAGGCATTACGTGGCTATCCTGGAGGACCTCATACACACTGTAGCTGGAGAACACAGCCTGGAACTTGCCCTGcttggggtcagaggtcatgtcAACGAGGCTATACTGTATGCACAGCTACACGAAGCCAGGATCAGTGCTACTGTGGATAAAGTGTGTGGCCAGTCTGTGGCTGAAACCCAAAGTGTTCACCCCACCACTGATACAATGATTCCCACAGTAACACTTTCCCCAGAGCCCACGACCAACCAGTCAGAGTCTAATGTCATGAAGCAGCTGGGAAGATTATCCCACCTACGCAGCTCGCTCCCTCTGAAACCCACCAAACACAATAAAGATAGAAGTCTAAAACAGATTGCTcgGGAGTTCATGAAGTATATTGAGCGCTTCAAGGCATTTTTTGCAGCAGTGCCGGAGATGCTGTGTGAAGGAGAGGTTGTGCGAGATGAACCCACGTGCTGGAGCGGAAATGACGTAGTGGAGAGTTATAAAGGTCGAGTGGTAGGCAATGGAATTATTGCTCAGAGACACAATCCTGAGGTGAGGGTCAGAGGTCCAGATGCTATGCTAGCAGCAGTCAAGGAGAGACTTGTGCACTTCAACCAGGAGATACAGAAGCACATGCCAGGACTAGGACACAGGGATTCATGGGAAGACCTGGGCAGTGGTGAAGACAGCAGTGGGGAGTGTGACGATGAGGATGGTTGCCAGGGGTCAGGGGAAGGCACAACTGAATCCTCTAACACAGACTCTAGTGTTGACACTGAGGTGGTGGTGAAATCTCCTCCTCATGAGGCTCCTGTAGGACGCTTTAAACCCAAACTCAGCAGCGCCGCTCATCTTGTCCTGCCCTCCTTcaccatcctcatcctcatcctggGACAGCAGTGGACCTTGAACTGAGAGGTTGAAGATGcacataaatatgaataaaaacgCAAGATCTTCTTCTGCTTGGATGCTCCATATCGTCTTCCAAGACTGCTGCCATTTTTTCTTGGCAGCAAAGATCTAATATATTCTTAAAGCATTTTCTCTTATATACATACGGACATGATCAAGCATATCAATAGCCATAACTGCTTTTAATCATATTCTCTCAGATGAAATGTCACttaaatatcacacatttaACCTTCAGCCTGTCAGTGAAATGCATGACAGAAGCACTTCTCTAGCACTAATGGACAAAGACAATATCTGATCAGCAGggaatgttttgttattaaacacatacacacagaggaagaagaaaaatgaaatgttattgttatgctcaatataatatgtatatagttATAATTCCATAGTGAggacagttttaaaatgaaaataccaCATCAGAATCCCAACCTATTTAACATAACCCACTTCgatacacacagaaaaacacacatatgtcTTTTTAACCATTATGAAATGACATTGATAGATTCAAcaaaaaagtgcattaaatatCAGTTCAGATTAATCTACTGGAATTATCAGGTTTAAAATGTTAAGATTTTACCCTGCATCTAAGCcaatgaaaaaaacagaaaaacagtagGGTCAGATGTACCATATGTTTTTCACATCACCTGAAATTTACTTAAAGCAATGGAAACGTGTAtacatcaaatatttttatgaaaacttcagaattcatcttggTGATAATATGAGTAATATGTCTTCATGTTGTATGTTCACATTCACTACCTAATTTACTACCATTCTTAAAGGACTAGCTAAGTTTTCATCCACTCTAACTTATTTTTTAAGGTCCAAATTCCAGAATAGTCATTGCATCTGAAAACTGAGTCCTGATCGTACATATGTTAGAATTTTGATTGTAAATTCGTAGTTTAAGCTTCCTGTATTACTAAATTCCTTAAAGTTCAAGCGCCaaataaaattaacttttttacTGCACTTTAAAAGTGATTGTAACAGttgattatatttaaaatttatatttcacttCGTAACCAGTTGCTGGGATGGAAACATGGTTATTATTATAGGGATCTTCAACCCTGGTTTTTCTGTTTCCCCTCCTTTCCTATTCACCTATACAAACTTTTGTTGCACACCTTTGCATATTTTTACATAGCAGTCGGACATCAGTTTTTTAGGACTGGTAAATTTAGGACTTAAAAATTACTTGTGCATCTCTTCTGCCTTATCGGCATTTAGCATAgcatatgtataaatgtatatatttaaggTCATTCACTGTTTTGTCTgtgtattacttttttttttcttttgtattgtGAAAGGTGCAGTGCGAGAGGCAATGAATCCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377875 lncRNA downstream 50968 12583865 ~ 12584089 (-) True G319059
TU377454 lncRNA downstream 833195 11801647 ~ 11801862 (-) True G318660
TU377432 lncRNA downstream 941723 11689489 ~ 11693334 (-) True G318639
XR_004580347.1 lncRNA downstream 1003136 11629570 ~ 11631921 (-) True LOC117599995
TU378012 lncRNA upstream 32005 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA upstream 41491 12764254 ~ 12765991 (-) True G319182
TU378022 lncRNA upstream 49886 12772649 ~ 12796934 (-) True G319186
TU378307 lncRNA upstream 88552 12811315 ~ 12856578 (-) True G319429
TU378345 lncRNA upstream 185716 12908479 ~ 12915491 (-) False LOC113533649
XM_026925363.2 mRNA downstream 112040 12436703 ~ 12523017 (-) True gpc1b
XM_026925335.2 mRNA downstream 271464 12063866 ~ 12363593 (-) False LOC113533285
XM_026925333.2 mRNA downstream 271464 12063866 ~ 12363593 (-) True LOC113533285
XM_026925716.2 mRNA downstream 929222 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297706.1 mRNA upstream 2171 12724934 ~ 12726494 (-) True LOC117595730
XM_034297734.1 mRNA upstream 29887 12752650 ~ 12754252 (-) True LOC113533469
XM_034297707.1 mRNA upstream 33941 12756704 ~ 12757144 (-) True LOC117595732
XM_034314883.1 mRNA upstream 97308 12820071 ~ 12832529 (-) False LOC113533584
XM_026925813.2 mRNA upstream 98464 12821227 ~ 12832529 (-) True LOC113533584
trnaw-cca_17 other downstream 1086618 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2106807 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3661845 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3680947 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 3749348 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 2009149 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2504709 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2964495 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2964495 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3634811 16357574 ~ 16367004 (-) True G321462

Expression Profile