RNA id: XM_026925666.2


Basic Information

Item Value
RNA id XM_026925666.2
length 4208
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC113533496
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14142203 ~ 14336583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctCCCGCCTGCCCGcgcctctcctctcctctccgcTCCGCTCCGCTTGTCTCCGGCGCGCTCGGCTCAGAATGGCCAGATTCACGCAGAGTGAAGCGAGGCggcatcagcagcagcagcagcagcagactcCCCCGCAACCCGCCCACGCCAGCGCGCTCCTCGGCGCGTCACCCGCACCACTGTCAGCAGCCCCGAGCCCGCAGCACGCGCACCTCGCGCTCCCCAAGCCCATGAGCGGCCCCGAGTCCGGCTCCGTGATCCACGCCGACGGCGGCGCCATGAAGGACCAGGACGCCATCAAGCTCTTCGTGGGCCAGATACCGCGCAACCTCGAGGAGAAGGACCTGAAACCGCTGTTCGAGCAGTTCGGCAAGATCCACGAGCTCACCGTGCTGAAGGACCGCTACACCGGCATGCACAAAGGCTGCGCGTTCCTCACCTACTGCGCTCGTGAGTCAGCCATCAAagcccagaatgcactgcacgAACAGAAAACTCTGCCAGGGATGACACGGCCTATTCAGGTTAAACCAGCTGACAGCGAGAGTCGTGGAGAGGACAGGAAGCTGTTTGTTGGCATGCTGAACAAGCAGCAGACGGAGGAGGATGTGTACCGCCTTTTCGAGCCTTATGGAGTGATTGAAGAGTGCACCGTATTGAGGGGTCCTGACGGAAACAGCAAAGgaTGTGCCTTTGTTAAGTTCTCCACACACACCGAGGCTCAGTCAGCAATCAGTGGCCTCCATGGGAGCCAGACCATGCCTGGAGCATCCTCCAGTCTGGTAGTGAAGTTCGCAGACACTGATAAGGAGAGGACTATCCGCCGCATGCAACAGATGGTCGGCCAGTTTGGCATCTTCAACCCTGCTGTGGCTCTGCcattcagcacatacagcagcACCTACAGCACCTACACACACGCTCTGATGCAGCAGCAGGCGGCCATAATGGCTGCGTCTCACGGTGGCTACCTGGCACCCAGCATGGCGTTTCCGGCTACACAGATCCACCAGGTGGGGGCGATCAACATGAACGGCCTGCCGCCCACTCCCATGACTCCAGTGTCAGGACTGAGCTCTCCCCCTGCTAACCTGGCATCCTCGGCCGTGCCCAGCATAGTGACCCCCATCGTTAATGGCTTCACTGGCATCCCACCGCAGCCCAATGGTCATCCGGTGGAGGCGGTCTACGCCAACGGCCTGCCACCGTACTCCACCCAGAGCCCCACTGCCGCCGACACACTTCAGCAGGCCTTCACCGGCGTCCAACAGTACACAgccATTTACCCCACCACCACACTGACCCCTATAGGCCAGACACTGCCACAGCCGCCTCAGGTCAttcaacagcagcaacagcagagAGAAGgtCCAGAGGGCTGCAATCTCTTCATCTACCACCTGCCACAGGAGTTTGGTGATAACGAACTGATGCAGATGTTTCTGCCTTTTGGCTCTGTCATCTCCTCCAAAGTGTTTATGGACCGAGCTACCAACCAGAGCAAGTGTTTTGGCTTTGTGAGCTTCGATAACCCTGGCAGTGCCCAGGCAGCCATCCAGGCCATGAACGGCTTCCAGATCGGCATGAAGCGCTTGAAAGTGCAGCTCAAAAGGCCAAAGGATGCCAGCCGCCCCTACTGACCCTCGCCCACGACactcacgtacacacacacacgcagctgaCAGCACAGGTTTTGAACAGTCTTGACATCTGTAACAGATGGAAAACTTTACTTGCAAAACCAACATGGAAAAGTGaccaacaagaaaaaaagaagaaaaaaagagaatcaaTTAAATGCAGCTTACAAATAAGtacatgatttttattttaagaaaaaaaaaaaacatatcagattTAACTTTGTGTGCAACACCATGGCGATGAGAAGTTTAGGGAACAACATGACAGGGAACGTCAGTATCAAGAGGACTGAAGCCAGCAATGAGAAAGccaaacaggacaaaaaaacaaacttttccttggaaaaaaaacagagagaacacTGTTTGAAAGACAGATTTTGGATTGATGCTGAAGAAGCCACAGTTTTCATGAGGAATTGAGCGACACCTGTGGCTTTTACTTCTATGGACTAATGAGGGTTTAATCtccaaggttaaaaaaaaaaaaaaaaaaaaagaagaagaagaaacatttcGTCATTTGGACGGATGTAAGaattctctctgtatctctttctctctttttttctgcagagCTCTTGTATATGGCTCATTAGAGGTTCCACAGAAGCAGTATCGTTGCAAATCTTTCTCTCgctttcctttcctctcttttgatccctctttctttctctctctctctctctttctctctctctctctcacccatgGCCCCTTTGGGGTCCAGAGGACCAAATCTTTTTAATCTCTATCTATAGTAACGTTCAATATTATCACTGATTATCTTATGATACAGGATATTGcgtaaaatattacaattaagAGTTAGAGAAAAATACTTCAgggtgtatagtgtatgtaaaaaaaaaaatcagggggGTTCTGTTTCGTTGTGAATAAACTAGGTTCCAGGTTAAAGGAGCAAAGCTACGGTGATGGTTATTGATGTAGAATTGGACATGCGTTGACATGAGGGGTTCGTTCTCCTTTTTCATTCACAGCCACACCTCATTATTCGACGgtcattctttttaaatattgaacaaaacattttaaagggaATTATGTGATTTCAGTTATAGGCAGACAATAATTCTATTTGCTAAGTGTCAAGATATGTTTCAGTGATTCAGCAGACGTGCTGAAATTTacaaatctaaatttaaatttagcaTCTCTTTGTCATATTTTCCCTAAAGCTAATGCAGCATCCTCCACCGTAAAAGGCATATGACTCACAGAAcggaaagaaaacaaacaataagCCCTAGTGTCTAACTCACATCATTATTCTGTTCTATATTAATGCcttatttaaattaatgtgaATTAACAGTATAATTCACAGTTCTGTTTCAGAACAGTAGTCCATTTCCTAAAAGCTTCCCACCCACAATAAAACGCACAAATGATGGAAAACAGTATGCTTGGTATTCACACACCTTTATGTCACGTCTGCCATTTTCACGTTTCGACACCAGGAATATAAAACAAGCTTACTTGTACATAACAGTATCGCTTGTATATGAAACAAAGCAGACAAgcatgcaatttaaaaaaataccgaAACTAGAGAAAATTGCATCGCAGTAGGTTCAGCCATCTTGGACTTGTAGAGATCACATGACAAGCACACGTCAAACACCTGATTCACACTAAAACATGAAAacttcattttcagatttatcCACTTTGGAGAACAGATTCAAATACTGTTTCGTTATAGATGGAAAACCAAACTGGATACATTTTTCAAACAGTGGACTAGGCCTTATTTACAATAGACTAAAATATGCTTTTGTAAAGGCAGTCCATAAAGTTTTTTATTACATTGCTCTTTCTGCCTCTAAACAGTTAGTTAGACAGCATATTATAAATATCAGACATACCGCAGTCCATATAACAGCTCTAGTCAAATGCTAAAGAAATTGAGCAGGTTTTGAGCACGTTTGCTTTGAAATGTCAGGAGTAATCTTATTCTATTGAAGAATGAATAGGAACAGGATGTGTAAATCCAGCAGTGTAATGCTATGTAAGTTATCACATGACCAAATATATACTAGTGGACATGCAGTACAAAAGCTACTCCTGTTTAAAGGGTTTATTTTCAAAGGAACTTGTTTACCACATGGGCCTGTCTAACGTTCTACCACCAGTTGTCACGTTTCTTGCAAATGCATTTGTAGGAAATTCAAATTCATTACAGCAGGTCAACTTAAACATGGGATCAGTATAGTTGATTATTAAGTTGTAATATTTGGCAAGTCATCATTCAGGCAGctgtcaaaaaacaaacaaacaaacaaaaaaaacttcccAGTGCTCTACAAACAGGAGAAACATTAATAATGTGGACCACatccaacatccaaccaatcaacTTCCCTGTCAATTGAGAAAGTCCCGCCTCTCTTCCTAGCTTTTTTTAGGCATGTGTTATAGGGGGTGTGGCTGTATAAAGGAGCTGTACCGGTTTGGAGTTTCAAAACAGCTAATTTCTGCCAAAACTGCTGACTATACCTTTAACACCTTTAACATCCTCTTAGCCGTGCCAAAAAAA

Function

GO: NA

KEGG:

id description
K13207 CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379249 lncRNA downstream 1694 14137891 ~ 14140509 (-) True G320243
TU379237 lncRNA downstream 65842 14076139 ~ 14076361 (-) True G320234
TU379226 lncRNA downstream 89254 14052750 ~ 14052949 (-) True G320223
TU379221 lncRNA downstream 99005 14042887 ~ 14043198 (-) True G320218
TU379220 lncRNA downstream 101027 14040953 ~ 14041176 (-) True G320217
TU379329 lncRNA upstream 25364 14361947 ~ 14451023 (-) True G320317
TU379346 lncRNA upstream 55405 14391988 ~ 14395913 (-) True G320332
TU379728 lncRNA upstream 235101 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA upstream 291202 14627785 ~ 14632171 (-) True G320635
TU379867 lncRNA upstream 727543 15064126 ~ 15065780 (-) True G320767
XM_026925900.2 mRNA downstream 211065 13909865 ~ 13931138 (-) True acss2l
XM_026925218.2 mRNA downstream 322742 13807775 ~ 13819461 (-) True napgb
XM_026925505.2 mRNA downstream 431506 13705300 ~ 13710697 (-) True LOC113533381
XM_034297789.1 mRNA downstream 438785 13693403 ~ 13703418 (-) True abhd8a
XM_026925764.2 mRNA upstream 65346 14401929 ~ 14404823 (-) True rxfp3.2a
XM_026925763.2 mRNA upstream 71869 14408452 ~ 14429093 (-) True creb3l3b
XM_034314772.1 mRNA upstream 334689 14671272 ~ 14705998 (-) False plpp2a
XM_026925467.2 mRNA upstream 334689 14671272 ~ 14702715 (-) True plpp2a
XM_034314771.1 mRNA upstream 334689 14671272 ~ 14702709 (-) False plpp2a
trnaw-cca_17 other downstream 2593764 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 3613953 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5168991 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5188093 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 5256494 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 395329 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 890889 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 1350675 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 1350675 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 2020991 16357574 ~ 16367004 (-) True G321462

Expression Profile