RNA id: XM_026925673.2


Basic Information

Item Value
RNA id XM_026925673.2
length 3702
RNA type mRNA
GC content 0.44
exon number 8
gene id kcnj9
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 12940528 ~ 12964781 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGCTCAGTCGTGCTCGAGCCTTTCAGATGTTCGCCGGCGTTTCCAGATCCGCCTCCATTTTAACAGCATACCGGCAAAAACACACGGATTAAGAAGAAAATTCGCCTGGATTCCGAGATTAGATTAAAATtgcaacgttttttttttttttttttcatcctggtTGCTTGGCGGTGTTGGATAAGAGAGACGCTTTTGTTTCCTGGAGGACATAGAGAACACGaagtgatgcatttttaaaccGGCAGCAACATCCGCGATATAACTGCTCTATAACCCCAAAATGTGTACACTCATACTATTCAAATGAcaagatgaaatgaaaaattaaaaacaatattaacGCCATTCAGGTACAGTGTAATATCCTGGTGAAGTTACCGACTGAAGGAAGCCTGAGAGCAGGAAGCAAGTTGGCACAGATGAGCTTCTGCAACTGAGAATAACACACCAAGAAAGATCATTAACACATTGGGACACACACATAGCCGTCCAcccaccgacacacacacacacacacacacacacacacacacatacgcaaaCACACTTACACGCAGATGGCACTAGAAAACTCCACATTCTCTTCTCGGCCAGAGTCTCTCTCTTTGCCGGTCCCAGAGAAAGGGGAGGTGCCTGCTGAGGAGACCAAAGAAGATGCTCCTGCCACTGGAGTATTTAACGTATCGGAGGAACTCGGGCATGTGGTAACCACAGAGACATCATCGCCCCCGCAAGTGCCGGCTAATAACAACCTGTCATTCCAGGCCAAGATGGCTGCCCGGGAAGCACAAGCCAATCAGCCCCGAAAGAAGCTGCAAGGGGCAGGGCAGGAGCGGGGAAAGTTTGGCTGGGCACGCAGTAAGCGTAAGAGGCAACGATATGTGGAGAAAAATGGCCGCTGTAATGTACAGCATGGTAACATGCGAGAAACTTACCGCTACTTGACGGACATCTTTACCACTCTGGTGGATCTGAACTGGCGCTGCTCACTCTTTGTTTTCGTCATGGCTTATGCCGTCACCTGGCTTTTCTTTGGTGCAATATGGTACCTTATTGCATACTGCAGggGAGATCTGGATCATTTGGAGGACGAGACGTGGACTCCATGTgtgaataatgttaatggttttATCTCCGCTTTCCTTTTCTCCATCGAGACAGAGACCACCATCGGATATGGCCATCGTGTCATCACTGACCAGTGTCCTGTGGGCACCATGCTTCTGCTTTTGCAAGCCATACTGGGCTCGATGGTCAATGCTTTTATGGTTGGCTGTATGTTTGTGAAGATCTCTCAGCCAAACAAGCGGGCAGAGACACTGGTGTTCTCCCGGAACGCAGTCATCTCTCTGCGGGACGATAAGCTGTGTCTGATGTTCCGAGTCGGGGATCTGAGATCCTCACACATCGTGGGAGCCAACATGAGAGCAAAGCTCATCAAATCCAAACAGACCCAAGAGGGTGAATTTATTCCTCTGGATCAGACAGATATCAGTGTGGGCTTTGAGACAGGGGATGACCGCTTGTTCCTGGTGTCTCCGTTGGTCATCTCTCATGAGATCGACTCACGCTCGCCGTTCTGGGACATGTCCCAGGCACAGCTGGAGAAGGAAGACTTTGAGATTGTTGTTATTCTGGAGGGCATGGTGGAAGCTACAGgtatgACATGTCAAGCACGGAGCTCCTATTTAGCCGAGGAGGTGCTGTGGGGTCACAGGTTCAGCCCGATGATGTCCCTGGCAGAAGGATTCTTTGATGTGGACTACGGAGCATTTCATCATACCTTTGAGGTGGACACTCCTTCTTGTTCAGCTCGAGAGCTTGCGTTAGCTGCTGCTCGTCTGGAAGCTCACCTCTATTGGTCTATCTCCAGCCGGCTGGATGAAGAGAAGTGGGAGGGACCTAACCTGACCGAGCAGTCAAAAAACCCTGTTGATTCTGAATCTGTCAGTGGAAAAGATGGAGGCGGACCAACATTCATTGTGGGTGGAGTTACAGATACCCAGGAACAGCCAGTTGTAGGGGAACAGAATGGCAGTGTCACTacagaccaatcagaaactGAGGCctaagagaaagaaagtaagaatgCAAGTATTTTTAGGGTTTGAAAGTTAATATTATATCAGATTTGATTGAGAAACAATCCATGCCTTCTTCTTCAAATCTTAACCATTTAGCCGCTAATGTATAGCATAGAATACCTTTCCCCAACGGGGAAATCTTAGTCACTTGGTTTGTTGGTTTTAAAAGCAGACATCTGAAACTGTCCTGCTTTAAATTCTGGCAGGGTGTTTTTTGCGGCTGACATTAGGTTTCCTGAGGCCATTCATTACCCAGAATTCACAGAAATTACACAGGGTATGTTTGCTTTCACTATACATAATGTATCCATTTTGAGGAATGGCTGGCTGGACAGATTGTTTGTATATTGAAGATACGGTAGCTATATTACAGTTGATGGAAGTGCCATGCAACTACTTTCTTCATTATAATCCCTGGGGTTCTCTTCATCAGCATTTAACAGGATTATTTTGTGTCAGGAATTTATTGGTATTTCTATCTGTTTTTCAGAACAATCTCTCAAATGCAGGAAATGAATCTAATGGGCATGTGAAATgccccctttttttaaaaccataaaTCGTACAGTATTTGTGTCTGTTGTTTTAAAGTCACAGTCGGCCTTACAAACATATCTTGCACAGAGTTGACGTTTTTTTCAATGTAACAGGGGTTTGTTACTTACCTATTCTCTAAAACACTTcttaaatactgtacatatgttCTGGGGATGATACATCTTAAACATTTCAGAGGAAGTGCTAAACTAGGGTCAAAGATTCATGACTTAAAAGAATTGTCTAATCAAAAAATGGTAGCAGAGCTCTACAGAAAGCTAGTAGCCATCAATTGGCACTATGCCACACACATCATGTTAATTAATGGCTACTGGATTTCATTTATTCTAAGCCATGTCAGCATTTTTGCTCCTACTATTCATTTCATGGCTGCGCTCTTGTCTTCAGAGCTGCCAATAAATTTATGATGAATTACGTTGGTGAGTGCAGGCTACTCTGATGGAACATATTCCACTAATATTCTAGTCCATTCTATTCTTGGAAGCTGCCCAGAACCAAAGCATGTCTAATGCACAGTTTAATTATTCCTGTAATGTCCTATGGGAGGGAAACCTGCTGGTGCCTTTTCTGATGTTTCTGGACCTTAGAAGGAATTAGATCTCTGTGCAATACTATTATATAGCCATAAAATATACCAATCATGATATATCGGCATCAACTCAGTCATGGTACACAGGGTTGGGAATTTTTCGATGGATTtatggagagaaaaaatatgacaaagCGGTCATTCAGGTAAATGACTTCTATTACTCAGTAACAGTAATACTCAGTAATATAAACAGAAGGTAATGAATGCATAGACCACTTACATTCTAACAAACTGGTAACTAGATTGCGATAAGATCTTTTATTCTGAGATGAATGTCATATTCAGGctggcttttttatttatttcatgtcatATTCTGGGTTAAGCACATGTAGTAAGGAGTTCATACCGAAATTGTGTCATTgttattcagacctcagaatTATTTACATGCTTAAATAGTGCTCAGACAGCACTGATTGCAGTTGACAGCTGGGGCGGAGTTTGCCAAAGACCAGGAGTG

Function

GO: NA

KEGG:

id description
K05002 KCNJ9, KIR3.3; potassium inwardly-rectifying channel subfamily J member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378345 lncRNA downstream 25037 12908479 ~ 12915491 (-) False LOC113533649
TU378307 lncRNA downstream 83950 12811315 ~ 12856578 (-) True G319429
TU378022 lncRNA downstream 143594 12772649 ~ 12796934 (-) True G319186
TU378012 lncRNA downstream 161302 12754768 ~ 12779226 (-) True G319178
TU378017 lncRNA downstream 174537 12764254 ~ 12765991 (-) True G319182
TU378362 lncRNA upstream 24520 12989301 ~ 13021880 (-) True G319467
TU378376 lncRNA upstream 64328 13029109 ~ 13029704 (-) True G319474
TU378398 lncRNA upstream 104518 13069299 ~ 13069522 (-) True G319496
TU378446 lncRNA upstream 154007 13118788 ~ 13119111 (-) True G319544
TU378459 lncRNA upstream 170823 13135604 ~ 13135860 (-) True G319557
XM_026925923.2 mRNA downstream 12457 12908453 ~ 12928071 (-) False LOC113533649
XM_026925924.2 mRNA downstream 12914 12908453 ~ 12927614 (-) False LOC113533649
XM_026925925.2 mRNA downstream 13177 12908453 ~ 12927351 (-) True LOC113533649
XM_034314674.1 mRNA downstream 35092 12844080 ~ 12905436 (-) False svilb
XM_034314673.1 mRNA downstream 37306 12844080 ~ 12903222 (-) True svilb
XM_026925491.2 mRNA upstream 21481 12986262 ~ 12999987 (-) False cdc34b
XM_026925492.2 mRNA upstream 21481 12986262 ~ 12999940 (-) True cdc34b
XM_026925700.2 mRNA upstream 196755 13161536 ~ 13165217 (-) True LOC113533516
XM_026925801.2 mRNA upstream 320591 13285372 ~ 13294978 (-) True cactin
XM_034314616.1 mRNA upstream 341996 13306777 ~ 13377178 (-) False LOC113533154
trnaw-cca_17 other downstream 1392089 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2412278 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 3967316 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 3986418 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4054819 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1767131 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2262691 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2722477 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2722477 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3392793 16357574 ~ 16367004 (-) True G321462

Expression Profile