RNA id: XM_026925676.2


Basic Information

Item Value
RNA id XM_026925676.2
length 2654
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC113533503
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11187798 ~ 11221863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTGCGAGAATCCCACACATCCGCCATCACTACAGCTAAACCCACAAACTGAGTAGTGTTATTAGGCAAGGCAGGGATTGacaacagcacagagacagccaGGAGCCCAGGCCTTGGGGAAAGGTCGAGTGGGGATCCATAAATGATTGTATGCCGCTGTCTTGTTTAACAACAACCCCCAAAAACCGTGTTTGATGTTTGAGGAGAGTCAACAAACTCagtgacaaaaataaacaaacaaacaacaacaacaaaaaaacatgtctaATCTGAGCAAAGGCGGCACCAAGAAGGACACTAAGATGAGGATACGAGCTTTTCCTATGACCATGGATGAGAGGTATGTGAACAACATCTGGGAACTGTTGAAGAATGCCATCCAGGAGATCCAGAGGAAGAACAACAGTGGCCTAAGCTTTGAGGAGCTGTACAGAAACGCCTACACCATGGTACTGCACAAACACGGCGAGAAGCTCTACACAGGCCTGCGGGAGGTCGTCACAGAGCACCTAATCAATAAAGTCCGAGAAGACGTACTCAACTCCTTAAACAACAATTTCCTGCAGACTCTAAACCAGGCGTGGAATGATCATCAGACGGCCATGGTCATGATACGAGACATTTTAATGTACATGGACCGTGTGTATGTGCAGCAGAATAACGTAGAGAACGTGTATAACTTGGGCCTGATCATCTTTCGAGACCAGGTAGTTCGGTACGGCTGCATCAGAGACCACCTCCGCCAGACACTGCTGGACATGATCGCCAGGGAACGGAAGGGCGAGGTGGTGGacagagGAGCAATTAGAAATGCGTGCCAGATGCTTATGATATTGGGCTTGGAGGGGCGGTCAGTGTATGAGGAAGACTTTGAAGCTCCTTTCTTAGAAATGTCTGCAGAGTTCTTCCAGATGGAGAGTCAGAAGTTCCTGGCAGAGAACAGCGCCAGTGTGTACATAAAGAAAGTAGAGGCACGGATAAATGAAGAGATTGAGCGAGTGATGCACTGTCTGGACAAGTCGACAGAGGAGCCAATCGTCAAGGTAGTAGAGCGGGAGCTCATCTCCAAGCACATGAAGACCATTGTGGAAATGGAGAACTCTGGCCTGGTCCACATGCTTAAAAACGGAAAGACGGAGGATCTGGCCTGTATGTATAAACTATTCAGCAGGGTGCCAAACGGGCTGAAAAcaatgtgtgagtgtatgagtctGTATCTGAGAGAACAGGGGAAAGCGCTGGTGTCCGAGGAGGGAGAGGGCAAGAACCCTGTCGACTACATACAGGGCCTGCTGGACTTGAAGATGCGCTTTGACCGCTTCCTGCAGGAATCGTTCAGTAACGACCGGCTCTTTAAACAGACCATCGCTGGAGACTTTGAGTACTTTCTGAACCTCAACTCCCGATCACCCGAGTACCTCTCACTCTTCATTGACGACAAGCTGAAGAAAGGAGTCAAAGGACTGACTGAGCAGGAGGTCGAGTCCATCCTGGATAAGGCTATGGTGCTCTTCCGGTTCATGCAGGAGAAAGATGTTTTTGAGCGTTACTACAAACAGCACCTGGCCAGAAGACTTCTCACCAATAAGAGCGTCTCTGACGACTCGGAGAAAAATATGATCTCCAAGCTTAAGACAGAGTGTGGTTGTCAGTTCACCTCTAAACTGGAAGGCATGTTCAGGGACATGAGCATCTCTAACACCACCATGGACGAGTTCCGGCAGCACCTGCAGTCCACCGGGGTATCTCTAGGTGGTGTTGATCTCACAGTCAGAGTCCTGACTACAGGTTACTGGCCCACACAGTCAGCTACGCCCAAATGTAACATCCCTCACTCCCCACGGCATGCCTTTGAGGTCTTTAGAAGGTTTTACTTGGCCAAGCACAGTGGCCGGCAGCTCACACTGCAGCACCACATGGGCTCAGCAGACCTCAATGCCACCTTCTATGGGCCTGTGAAAAAGGAGGATGGGTCAGAGTTAGGCGTAGGAGGTGCACAGGTAACAGGCTCTAACACAAGGAAGCACATACTGCAGGTTTCCACCTTCCAGATGACTATCCTCATGCTCTTCAACAACAGAGAAAAGTGCACTTTTGAGGAGATCCAACAGGAGACGGATATCCCCGAGCGGGAGCTGGTACGAGCGTTGCAGTCTCTGGCGTGTGGAAAGCCCACGCAGCGAGTGCTTACCAAGGAGCCGAAGAGCAAAGAGATTGAGAACGGCCACATGTTTACAGTCAATGACCAGTTTACCTCCAAACTGCACAGAGTCAAAATCCAGACAGTCGCTGCTAAACAGGGGGAGTCAGACCCAGAGAGGAAGGAGACACGACAGAAAGTGGACGACGACCGGAAACACGAAATCGAGGCAGCCATAGTACGCATCATGAAATCTAGAAAGAAGATGCAGCACAATGTACTTGtagcagagGTGACTCAGCAGTTAAGGGCGCGGTTCCTCCCCAGCCCAGTGGTGATTAAAAAGAGAATTGAAGGACTTATAGAAAGAGAATATTTGGCACGAACACCAGAGGATCGCAAAGTGTACACTTACGTGGCATAGACATGGACACgaacagaggagtgtgtgaggaaaaaaaaaaacaaaaggaaaaaaactgcTCATATGGACTTGGAAATTCATTTTAACA

Function

GO: NA

KEGG:

id description
K03869 CUL3; cullin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU377003 lncRNA upstream 18659 11106795 ~ 11169139 (+) True G318331
TU377005 lncRNA upstream 67971 11112953 ~ 11119827 (+) True G318332
TU376936 lncRNA upstream 178652 11007948 ~ 11009146 (+) True G318273
TU376903 lncRNA upstream 200222 10984227 ~ 10987576 (+) False G318248
TU376904 lncRNA upstream 225428 10959921 ~ 10962370 (+) True G318248
TU377136 lncRNA downstream 181401 11403264 ~ 11404056 (+) True G318426
TU377440 lncRNA downstream 552080 11773943 ~ 11774148 (+) True G318647
TU377452 lncRNA downstream 577095 11798958 ~ 11799181 (+) True G318658
XR_004580299.1 lncRNA downstream 611445 11833308 ~ 11846411 (+) True LOC117599957
TU377478 lncRNA downstream 648904 11870767 ~ 11870966 (+) True G318683
XM_026925891.2 mRNA upstream 290047 10880241 ~ 10897751 (+) True map6d1
XM_026925863.2 mRNA upstream 309142 10861959 ~ 10878656 (+) True acsm3
XM_026925735.2 mRNA upstream 327502 10838755 ~ 10860296 (+) True ncapd2
XM_034314779.1 mRNA upstream 453710 10730346 ~ 10734088 (+) True camk2n1a
XM_026925808.2 mRNA upstream 468649 10713147 ~ 10719149 (+) False mul1a
XM_026925046.2 mRNA downstream 16376 11238239 ~ 11253682 (+) True ap1s3b
XM_026925045.2 mRNA downstream 16381 11238244 ~ 11253682 (+) False ap1s3b
XM_034314685.1 mRNA downstream 86158 11308021 ~ 11315878 (+) True LOC113533219
XM_026925192.2 mRNA downstream 102264 11324127 ~ 11342139 (+) True LOC113533220
XM_026925193.2 mRNA downstream 102264 11324127 ~ 11338817 (+) False LOC113533220
TU376560 other upstream 618902 10563835 ~ 10568896 (+) False eif4e2
XR_004580322.1 other upstream 624804 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other upstream 625184 10536431 ~ 10562614 (+) False capn10
trnar-ucu_12 other upstream 999974 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 1209897 9959329 ~ 9977901 (+) False pip4p1a
XR_004580315.1 other downstream 178021 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 245436 11467299 ~ 11469499 (+) True G318439
trnap-agg_14 other downstream 326245 11548108 ~ 11548179 (+) True trnap-agg_14
trnai-aau_17 other downstream 327252 11549115 ~ 11549188 (+) True trnai-aau_17
trnag-ccc_6 other downstream 350964 11572827 ~ 11572897 (+) True trnag-ccc_6

Expression Profile