RNA id: XM_026925682.2


Basic Information

Item Value
RNA id XM_026925682.2
length 1867
RNA type mRNA
GC content 0.44
exon number 9
gene id tpm4b
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16357577 ~ 16375352 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGTTTAAACCTTCCACAGAAGTGTTGTGTTTCATTCTGCTTTAGCCTGCTCTTTCCCTCCACTCcactcccctctctctctctttctctttctttctgtgtcctCATCATCACCTTCTGTCTTCGCAACCTCCTCGCTTGACCAGGAAAAGCTCCATTCTGACCATCCTCTACACTCTTGAGTGAGACCAGCTCCTTCGATTCTGTACATTTTCCTCTAACGAGAGTCGAACCACAGCCAGCAAAATGGAGGCGATCAAGAAGAAAATGCAGATGCTGAAGGGGGACAAGGAAAATGCCTTTGATCGTGCAGAGCAGGCCGAGTTGGACAAGAAGGTGTCGGAGGACAAGTGCAAGCAGCTGGAAGATGAGCTGCTGGGGCTGCAGAAGAAACTCAAGGGCACAGAGGATGAAGTGGACAAGTACTCCGAGGCCCTCAAAGATGCCCAGGAGAAACTGGAACTGTCTGAGAAGAAGGCCACAGATgctgagGGTGAAGTGGCTGCTCTGAACCGCAGGATCCAGCTAATCGAGGAGGAGTTGGACCGAGCCCAAGGGAGACTGGGCACCGCGCTCCAAAAACTGGAAGAAGCAGAGAAACAAGCTGATGAAAGCGAGAgaggTATGAAGGTGATTGAGAACCGTGCTATGAAAGACGAGGAGAAAATGGAAATTCAGGAGCTACAGCTTAAGGAGGCCAAACAAATTGCTGAAGATTCTGATCGCAAATACGATGAGgTGGCTCGTAAGCTGGTGGTCATAGAGGGTGAGCTGgagagagcagaggagaggGCAGAGGTTTCTGAACTCAAAAGCGGAGATCTGGAGGAGGAACTTAAAAATGTAACTAACACCCTGAAGTCCCTTGAAGCCCAGGCTGAGAAGTACTCAGACAAAGAAGACAAGTATGAGGAAGAGATCAATCTTCTCAATGAGAAACTGAAAGAGGCAGAGACACGTGCTGAGTTTGCAGAGAAAACTGTATCCAAACTGGAAAAGACTATTGATGATCTTGAGGAGAACCTAGGGCATGCAAAAGAAGAGAACTTGAATTTGAACCAAGTCTTGGATCAAACACTTCAAGAACTCAACAGCTTGTGAATAACAAAAAATGGAAACCATCACAACGAACAACATTCCaaatgtgtacgtgtgtgtgtctgtgtgcacgcatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggtttgggtgtgtttgtggttaaatTTTACCGCTCTGTTGTGTTGCCTGAGTCATGCTCTTCTATTTTTATTCCATATCCACccacacattttctttatgtTGCCAAGTGAcccattattatatattatatcacAAAAGGTGATGATGCTATTGACTCCTTCACACCTGCCATGCATAATACCCAACGTTTAACAAACATATTTTGATCCAATGGGCCTATTCCCCACATCACCGCATCCTTTGGGCCTCTTGTTACCCCAGGCCTGGGACATTTTCCCCAGTTACAGACCATAATGATAGTGTTTCCTGCATTAATGTGTCCATTCCACAttcctgtatttatttatttcacatccGTGCGTATCAGGAGTCTATGAAACGCCATTCAGGTTTCATAAACGTGGCATtcaaacaaaggaaaacatCTATGATGCATTATTCACACTTACAGAATTCAGGTTATATTAGATCTACAGTGATGCGTGGTATGTTTAAGGGATTGTTTTTCCAGTTTCAGTGGTTAATATGAAGTCACTGAAAAGTGtcaaatgaagttttttttttcccctcaatcgCTTTTCTGGAAATGATGGCtctgttttgtactttttaaaccacaataaacttttcttttcttttttacattttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580325.1 lncRNA upstream 170574 16185620 ~ 16187003 (+) True LOC117599979
TU380437 lncRNA upstream 219973 16135324 ~ 16137604 (+) True G321258
TU380433 lncRNA upstream 226572 16130730 ~ 16131005 (+) True G321256
TU380432 lncRNA upstream 226893 16130422 ~ 16130684 (+) True G321255
TU380431 lncRNA upstream 227308 16129949 ~ 16130269 (+) True G321254
TU380634 lncRNA downstream 10905 16386257 ~ 16386523 (+) True G321429
TU380639 lncRNA downstream 60847 16436199 ~ 16446124 (+) True G321434
TU380640 lncRNA downstream 81091 16456443 ~ 16457168 (+) True G321435
TU380660 lncRNA downstream 218845 16594197 ~ 16600593 (+) True G321454
TU380777 lncRNA downstream 291078 16666430 ~ 16703816 (+) True G321563
XM_026925167.2 mRNA upstream 134247 16196924 ~ 16223330 (+) True eps15l1b
XM_026925172.2 mRNA upstream 134247 16196924 ~ 16223330 (+) False eps15l1b
XM_026925175.2 mRNA upstream 136557 16196924 ~ 16221020 (+) False eps15l1b
XM_026925170.2 mRNA upstream 136589 16196924 ~ 16220988 (+) False eps15l1b
XM_034314694.1 mRNA upstream 136589 16196924 ~ 16220988 (+) False eps15l1b
XM_026925685.2 mRNA downstream 818 16376170 ~ 16385221 (+) True rab8a
XM_026925599.2 mRNA downstream 20476 16395828 ~ 16404212 (+) False sugp1
XM_026925598.2 mRNA downstream 20594 16395946 ~ 16404567 (+) True sugp1
XM_026925540.2 mRNA downstream 29436 16404788 ~ 16419408 (+) True mau2
XM_034314659.1 mRNA downstream 29969 16405321 ~ 16419408 (+) False mau2
trnag-gcc_20 other upstream 170536 16186971 ~ 16187041 (+) True trnag-gcc_20
trnag-gcc_19 other upstream 172010 16185497 ~ 16185567 (+) True trnag-gcc_19
trnag-gcc_18 other upstream 173435 16184072 ~ 16184142 (+) True trnag-gcc_18
TU380434 other upstream 225213 16131335 ~ 16132364 (+) True G321257
XR_003403417.2 other upstream 237544 16112036 ~ 16120033 (+) False si:ch211-178n15.1
TU380835 other downstream 476093 16851445 ~ 16852424 (+) False LOC117599970
XR_004580277.1 other downstream 1103482 17478834 ~ 17483677 (+) False fuz
XR_004580278.1 other downstream 1103482 17478834 ~ 17483677 (+) False fuz
XR_003404718.2 other downstream 1195297 17570649 ~ 17631608 (+) False egfra
TU381774 other downstream 1851210 18226562 ~ 18227233 (+) False si:ch211-162e15.3

Expression Profile