RNA id: XM_026925696.2


Basic Information

Item Value
RNA id XM_026925696.2
length 2150
RNA type mRNA
GC content 0.40
exon number 6
gene id plekhj1
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15329012 ~ 15332661 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCGTGGTAATCGTGCGCATGCGCGGTCTGAGTCGGTCATGGATTCAGGAGACGCGGATGGGCTGGTGAGCTCGCAGCGTGGAAGTTTTCCCAGGAACCGGGTGTAGACTCTGTCCAcgagggaggggaaaaaagaagagaaacagaagagcTTTATGAGCAGAATGGATTATCCGTGCTAATAGAGAACTATGTGTGATGGCTGAAtcagtgaaatattaaaaaaatggatcAACTGGGAAGTATCATCTCTGGAGATTTGTTTGTAAACTGAGTGGGttcattttaatcaaatcaGCAGAGTAttgacattaacattagcagGATGGTGTTAATCATCTAGCTAGCAAACTGTAGGAAAGTTAGAACTAGACCTAGTTGTGATAATGCGGTTCAATGAGAAAGAGCTGGTGTTCCTGAGCCGCCAGCCGTCAGAGAGAGCGGCCGAGCTGGGCATGAAGGGACCGAAGAAAGGCGACGTTATGAAGAGGAGACTGGTCAAGCTTATAGTCAATTTCCTGTTTTACTTTCGCACCTATGAGGAGGAGCCAATTGGAGCTTTGCTTCTGGAGCAGTGTCGAGTCGAGAGAGAAGATGACCTCGCCTTCTCCATCACTTTCCTAGATGAGGCAGAGAGAAAGTACCTGTTTGAATGTAACTCTCGGGAGCAATGCGTCGAATGGATGGATGCTATTATAAAAGCCagCTATGAGTTTATGCGCAAGAACCTCATCTTCTATCGATCTGAGATCCATCGACTGACTGGCAAGGACCCGCTGGAGCAGTATGGGATTTCAGATGAGACACGCTTCCAGGTGAGCAATGCGctccctcctccacctccttAACGACGCTCAGCGAGTCGGTGCTTCGATCTGCTTTGGGcagaacattttcattttgaatgaaTCGATACACTGCTGTCATTTTTCTCTTCATATGGGATCATGGGGTCacaacacttttcattttattgttatgtGAATAGAGTGAAAAGGCTACTAtcactgtgtatttttaattatcataCTGTTAGGAATGTGAGCTGAGAATGAGCCAGTAGCAGTGTGTTTTAATGAGgccattctttttttattcactttcagTGGTAGCTATCTGTAAGTTTCACACttgtcagttaaaaaaaaaaaaacacaccagttCATTTGGTCATGGCTGTATACAGAAGCAGTCTGATCTTTTGTTGTGGGTGTGGGGGTGTCTGGTAAGTTTCACTTCGTGAAAATGTGTGTGCCCTGCAGCCCTGTTTTGCATGATATGACACACAGAAACTTGCACTGAACCACTTCCTGTGATTAATACGTGACTGTACGTGGCAATTCTTTTGTGGTTTGTCTGTTGGGtgcaataaataattttatcaaGCCTAATATTCACTGATTAGGTACAGTAGAATGTTAGCTCAGATCAGTCTTAATTTTGACCTAATTCTgcctttccttttttaatttgtaaattcaTTCCTGCACAGTGCAAAGCTACTAAGCTAATTATCTGCAACACCACACATTTTTGTTAGTCTAGTAATTATCATTacaatcatttgcatatcatggGTATTAAGTGTAATACTAAGCATTTATACTGTCTTAGGGAAAgaattcaccaaaaaaaaatctgatttacaGATATTTGATGTTGGACATTTGCTCTTTTTGTTTGTAagaatttattttctcattgtGTAGAATCATAGTAAGGTGTCAAtggtggaaattttttttttgctaacagGAAGTAGTGTGACAGCCCAATGACCTGGTTTTATTGAGTGCAGATGGAGGACATTTTGTGTAAAGTAAACCTGCTGGGAGATTCAATATTAGATGTGGATTTGTCTTAGATTCTGACAAAATCTGAATCTAAGACAATGGTGTAGGCTTTTGCAAGATAATGATCTAATCGTTTATTCCAGCTATATTACCAGATCTGTcaacctttatgcattttgcataaagataatttaacatcagagtatACTATAGTACGATTGATGATTTGACACGTGTATTGAACTCTCAGGCGTTAACTGATACTGCCTTAGACAAGTATATATGTAAGATCAGTTAACTACATTTATTAGGGACGCCAATGAAATATTACAGcccaaaattgtaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K24021 PLEKHJ; pleckstrin homology domain-containing family J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380013 lncRNA downstream 24987 15303811 ~ 15304025 (-) True G320880
TU380004 lncRNA downstream 42135 15286084 ~ 15286877 (-) True G320871
TU380003 lncRNA downstream 43071 15285638 ~ 15285941 (-) True G320870
TU380001 lncRNA downstream 44587 15283635 ~ 15284425 (-) True G320868
TU380000 lncRNA downstream 46272 15282360 ~ 15282740 (-) True G320867
TU380032 lncRNA upstream 47474 15380135 ~ 15460416 (-) True G320897
TU380184 lncRNA upstream 259499 15592160 ~ 15592616 (-) True G321032
XR_003403423.2 lncRNA upstream 354421 15687082 ~ 15724356 (-) False LOC113533563
XR_004580366.1 lncRNA upstream 354421 15687082 ~ 15717536 (-) False LOC113533563
XR_003403425.2 lncRNA upstream 354421 15687082 ~ 15713172 (-) False LOC113533563
XM_026925177.2 mRNA downstream 22232 15304278 ~ 15306780 (-) True LOC113533213
XM_026925032.2 mRNA downstream 49046 15274921 ~ 15279966 (-) True si:ch211-155e24.3
XM_026925034.2 mRNA downstream 56853 15269159 ~ 15272159 (-) True LOC113533136
XM_026925033.2 mRNA downstream 56856 15269159 ~ 15272156 (-) False LOC113533136
XM_026925644.2 mRNA downstream 97758 15222778 ~ 15231254 (-) True LOC113533479
XM_026925736.2 mRNA upstream 6076 15338737 ~ 15349506 (-) True LOC113533539
XM_026925734.2 mRNA upstream 130955 15463616 ~ 15489260 (-) True onecut3b
XM_034297689.1 mRNA upstream 261774 15594435 ~ 15648744 (-) False LOC113533480
XM_034297688.1 mRNA upstream 261774 15594435 ~ 15648744 (-) True LOC113533480
XM_026925125.2 mRNA upstream 521842 15854503 ~ 15861482 (-) True zgc:85843
TU379938 other downstream 99756 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 583525 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3780573 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4800762 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6355800 8969781 ~ 8973212 (-) False LOC113542985
TU380215 other upstream 354597 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 354597 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1024913 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1286972 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 1641027 16973688 ~ 16973770 (-) False trnal-uaa_3

Expression Profile