RNA id: XM_026925700.2


Basic Information

Item Value
RNA id XM_026925700.2
length 2304
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC113533516
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13161536 ~ 13165217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAGTGTGGTGGAAagtgtttgcattttaatgacAAACCACAAAAGCTTAACCATACTGACTGAAACATAGAGACACAatttttttgtgtgctttttacAGAAGGTTACGTGTTGTCGGTGTTACCCACATCCATTTACATGAATTTTCCATTTTGAGCTTGTGGAGGGTTTCAAAACTGTTCTGACGTTCTAAGCTCGGAGAAAAGGAGAGTCTTCTGTGCTCAGTGGCGATGGTGTTTAACTGCAGCGTGGTGCCAAATGGACCTGAACCGGGCCTTAGTATTTTCCAGCGTGTGGCCTACACACTTCGTGTTCATTTTAGGCCTCATCCTGAATACCTCAGCCTTGTGGTGCTTCACGCGCACCCGCCAGTGGACGGACATTCACATCTACATGCTCAACCTCCTGCTCGCAGACCTCTTACTGACCCTTTTCCTGCCCTTCCGCATATTCGAGACCTACTGCCCTATGAGTCCAACGCAATTCTGTACGTTCTTGATATGTGTGCATTACACCAACATGTACGCTAGCGTCTTTACCATCACAGCCATCAGCATCCATCGTTACATAGCTGTCAAGTTCCCCATGCAGAACAAAACCTCAGGCATGTCAAAGGGCAGGAGAAGAAAGATAACGAGTGGCACATGTGCTTTCATCTGGCTCTTAGTCATAACACTTTGCATAACTTTCAGGAAAAATATGTATCCAGAGAAGCTAAAGACATGCTATGAGCGCAAGGGAGATATTAGAATGAGACTTGAGTTCCTATTGGTTCTGGAGATTCTTGGGTATCTTGTGCCGATAGTCACCATCACGACTTGTTCAATACAAGCAATCTGGACAGTTCTAAAGTCGATAAAGGATATCCAACAGCACACAGAGGAGGAAACTATCGACAAAAGGAAAAGCATCATGGCCATAATCACAGCAAACATGATTGTTTTCATTGTGTGCTTTACCCCGATCCATGCTGGTTATTTGCTGAGATACATTTATGACGACAACTGTAGATTTGTTCATATCTTTTATGATGTCTCTGAATGGTTAGCAACAACAAATTGTTGCCTGGATTCTATAGGATATTACTTTTTGTTGAAAAAAGTTTTCAGAGACAAGAAGTAGCATATGAGCCTAGcttgctaataataatattagtgcTAAttgctaatattaataataatattataataataaagcttGCAACTTTCTAATACTCAAGGTCTCATTACAAAAAATAGACTAGATTAATAGGAAAAGACTAgcaggaagaagaaagggaaaacTGTTGGGAGTAAAGGTAAGTTTTAAATTGATTCTTGATTATTGATTTGCATGAAATGATGAAAGTATGAACCAGGTTTCCAGTATCTTTCTTTCCAAGTAAGGGTTGAACGAGGGTCAGACTTCAGgagataataaaaagaaattttttttttatcagataaTAAGGAAGGAAATGACAATTCAAGTCTTTAATCTGACATTTACCCACAAGTAGATGTGCAAATGTGAGGTATATCAAATGCAAATCTAGTGCTCACTTTCTTTAACAAGAATATCAGACAGATCAGACTTTGTTTTCACTTAAAaatcacatacagtacatttcatATGTCATCATAATTTATTCACTTTTGACTGTAACTTTTTCCATAAGGGTTGGTTACAAAACAAATATTGTTGTGTTGTATATTGTTAAGCTCTAAGGTGGAGattaaaaagaggaagaaacggattgctttcatttctttaaactgGGTTATTACGAATGTAGCAGGCCATCCATGTAAACTATTTTTTATCCACAGGTTCATATTGACCTGGTTTACATACCATATACAACTATTTGCCAAGGCAAAAATGAGCTGTACCAGACCATATTAGAGGAAACTGTGTAGCATGTCACCATGTCTGTGGTAATCGAGTGTGCGAGTACCTCTTTGTAGGCTAGCTGTTGTTGCTCTTAGATGATTCTGTTTCACAGTAATATCAGTTACATTTGACAGGGCAGATCTAGCAGGGCAGAAATGTCATGAACTGGCAAATGTGacagtttaatttcatttaaattcactgagctcttcagtaccACCCTTTCTATTGCCAATGGTTGTTGCATGGCTATTTGCTTGATTTTATGTACCTGTTAGTGGCTGGAACACTTGAGCTCAATCATTAGgaggggtgtccacatacttttggtcctgtaatgtatatttaatgttaatgaacacGTAGTTTCCTTTTCAGTTCACTAgaaattcattaaattatttttaatgtttgtattgTGCTATCTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378470 lncRNA downstream 17265 13144063 ~ 13144271 (-) True G319568
TU378461 lncRNA downstream 24947 13136385 ~ 13136589 (-) True G319559
TU378459 lncRNA downstream 25676 13135604 ~ 13135860 (-) True G319557
TU378446 lncRNA downstream 42425 13118788 ~ 13119111 (-) True G319544
TU378398 lncRNA downstream 92014 13069299 ~ 13069522 (-) True G319496
TU378512 lncRNA upstream 140312 13305529 ~ 13309043 (-) True G319606
TU378596 lncRNA upstream 257134 13422351 ~ 13425952 (-) True G319673
TU378597 lncRNA upstream 262794 13428011 ~ 13428963 (-) True G319674
TU378684 lncRNA upstream 421874 13587091 ~ 13587531 (-) True G319754
TU378700 lncRNA upstream 447303 13612520 ~ 13615743 (-) True ccl25a
XM_026925491.2 mRNA downstream 161549 12986262 ~ 12999987 (-) False cdc34b
XM_026925492.2 mRNA downstream 161596 12986262 ~ 12999940 (-) True cdc34b
XM_026925673.2 mRNA downstream 196755 12940528 ~ 12964781 (-) True kcnj9
XM_026925923.2 mRNA downstream 233465 12908453 ~ 12928071 (-) False LOC113533649
XM_026925924.2 mRNA downstream 233922 12908453 ~ 12927614 (-) False LOC113533649
XM_026925801.2 mRNA upstream 120155 13285372 ~ 13294978 (-) True cactin
XM_034314616.1 mRNA upstream 141560 13306777 ~ 13377178 (-) False LOC113533154
XM_034314611.1 mRNA upstream 141560 13306777 ~ 13339854 (-) False LOC113533154
XM_034314612.1 mRNA upstream 141560 13306777 ~ 13339854 (-) False LOC113533154
XM_034314613.1 mRNA upstream 141560 13306777 ~ 13339854 (-) False LOC113533154
trnaw-cca_17 other downstream 1613097 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 2633286 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 4188324 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 4207426 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 4275827 8883649 ~ 8885709 (-) True G317176
TU379789 other upstream 1566695 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 2062255 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 2522041 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 2522041 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 3192357 16357574 ~ 16367004 (-) True G321462

Expression Profile