RNA id: XM_026925709.2


Basic Information

Item Value
RNA id XM_026925709.2
length 5569
RNA type mRNA
GC content 0.43
exon number 15
gene id kirrel1b
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10291830 ~ 10347388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagaagagagtgTTCTGTTTCGAGGGCTTGTTTCGTTAATGATGGAGTGAATGAAACCAAAAGCGACAGAGCTACAggagactgcacacacacacgcgcgcgcgcgcgcacacagacacacacaatggGACGGGGAGCCACACGCAGCACGGTGAACTGGAGAGTCATGTGCAGGGACACGCTTTGTgttgtcattatttaaatgatcacAGATCGGACAGTGGGAACCTGAGGGAGATGAATTGACGTTTTTTTGTAGCAGCGGTGGGACGGACGGGTTTGTACCGGCGCGCCTCACAGCCATGGCATGGTTTTGCATCTTAACTTTGGCCGTCGGTGTTCACGTGAACAAAGTGCTGGCTGGGCCACGCTTCTCTCAGGAGCCAGCAGATCAGTCGGTGGTGTTGGGGGAGCGGGTTGTACTCTCCTGTGTGGTGTTTAACTACACGGGCATCGTCCAGTGGACCAAAGACGGACTCGCTCTAGGCATTGGAGAGGACCTGAGGGCATGGCCACGTTATCGTGTATTAAGGATCATTGACGTGGGTCAGTATAACCTGGAGATTTCGTCAGCCGAGCTCTCGGATGATTCTCTGTATGAGTGTCAAGCCACTGAAGCAGCTCTCCGATCCAGAAGAGCCAAACTCACTGTCCTCATTCCCCCAGATGATCCAGTGATAGAAGGTGCTCCAGAGATTTTGTTGACAGCAGGAATCTCGTACAACCTGACATGTGTGTCCCGAGGGGCCAAACCACTCTCGACCATAGAGTGGTATAAAGATGGAGTTATAGTGGAAGGAGCTCATACTAGCACTGAGGTTTTGCCTGACAGGAAGCGAGTAACCACACGCAGTTTCCTGCCTATTCAGCCTGTAGACACAGACACTGGACACAACTTCACCTGTGTCTCCTCCAATCTGGCTGTGCCACTGGGCAAACGAGCCAGTGTCACACTCAACGTACACCaTGCTCCCACAGTTTTATTATCGATCGAGCCTCGTTCAGTtctagagggagagagagtaacaTTTACATGCCAAGCTACAGCCAACCCTGCTATCATGGGCTacagGTGGGCTAAAGGTGGAGTAATCCTGGAGGGAGCGAGGGAGAGTGTGTTCGTAACTACAGCTGATCACTCGTTCTTCACTGAGCCTGTTTCCTGCCAGGTGTTCAACGCTGTGGGCAGCACCAACGTCAGCATATTGGTGGATGTACACTTTGGTCCAATCCTGGTAGTGGAACCGAGGCCTGTAACGGTGGATGTGGACTCTGATGTAACACTGAACTGTAAATGGGCAGGAAATCCTCCTCTTACACTCACCTGGACAAAAAAGGGCTCCAGTATGGTTCtcagtaataataatcagttGTATTTGAAGTCAGTGAGTCAGGCTGATGCAGGACAGTATGTGTGTAAAGCCATCGTACCCAGGATTGGGGTTGGGGAGACAGAGGTCACACTCACAGTCAATGGTCCGCCAATTATTTCAAGTGAACCAGTTCAGTATGCTGTAAGAGGTGAGAAGGGTGAGATCAAATGCTACATTGCGAGCACACCTCCTCCTGACAAAATTGTGTGGGCCTGGAAGGAGAATGTGTGGGAGAAAGATAGAGGCACTCTGTCAGAGAGATACACAGTAGAGCAGAGCAAGCCAGCATCAGAAGGGGGTGCTGTGCTCTCCACCCTCACCATCAATAATGTGATAGAGTCAGACTTTCAATCCACATACAACTGCACGGCCTGGAACTCATTTGGACCAGGCACCATGATCATCACACTGGcagagacagATATTGTCCCTGTGGGTATAATAGCTGGTGGGACAGTCGGATCCTCCATCCTGCTTGTTCTCTTCTTGCTCGCCCTGGCCTTCTACCTCTACCGCCAGCGAAAAGCCAGTCGTCGAGGGGTTGCACTGAAGCCTGACATCAAGGTCGAGACAGTCAACAAGGAGACACCCAGCCTAGAAGAAGATACTGCAGGTGTCTCTACAGCATCTCGCATGCCTTTCAAAGACGACACGGACCTGAAGCAGGACACTCGCAGTGAAACACTGGAGACCAAGGAGGAGTACGAGCTGAAGGACCCAACAAATGGCTATTACAACGTGCGAGCAACGACCCATGAAGAAGGACGTACCACGGCCCGCTACCAGGAATTCCGCCCACCCAACCCATCCTCAGTCTCCACTTCTGCAGCAGGCTCAGCACCCAGTATTAATCCTGCTCCTATTGGTCGCTATGAACCGCGCCCACCATCTCGGATTACTCACAACACTTACGCCCACTTCAGCACCATCGCCAGGACCAAACAAAGCCAGGGTCCACCCAAAGCAGCGCTTCAGACCACAGATTATTCCAGAGAATGTGGCCTGCTtgaatcaaccaatcagctcACTTATGACACATATGGATACCAAACCACGGCACAATACGCTCAGTATAGGCTTGGCTTTGCTCCACCGCTTGAGGAAGGACCAGCGTATGAGATGTATCCAACAGGACAGGGGGTGGGGCCAAATCAAGGGGTAGGGCCAGACGCTGGACTGGGGAAGTACGGGAGCTCAACACGTTTCTCCTATTCGTCTCCACCCACAGAATACTCTCAGAGACACACGCAGAGGATGCAGACACATGTATGAGAGTGTAACAggacactgatacacacacacattttactgaGGACTTACAATTGTGGTTAATCAAAATCTAGATTCACAGATTAGTGTAGCtatctcacagacacacacacacacacacacacacacacgcacgcacgtgcacacacattgTATTTTGTACTATCATGTCTTCATTTTGTGCCATCACTATAATGCCAAACCAAGATTAAGTATGAAATgcaaagataaaatataaaaagggtGGAGGGACACATTCATAACTTCTATATATTCCGTTCTCCATTCTCCCCTTACCCCTGTTTCACTTCTCCTGTCATCATATGTAAATATACCCGAAAGAAGTGTCAACAGACACAAGGAGTGTTTCCTGAAGTTGATAACTGCCCTGGTATAACAAGCACGATAGCTGATAAGAAGCAATAGGTTTGTCCATTTAAGGGGACGTTGTGACCCGACTGTTTCCTGTTGGAATCTGCAGATGGCACCAGAGGTTGTTGGGAAATTTCTCCAGCCTCAGTTAACACAGTCTGTGCCATTAGATAATATGAAgaacagtgtatgtgtgtaaagtgtatgcTCTTCAGTGCAAAGTCTCATTGGTGTCATACCTGCAGGAGTTGCAGAATGTCATTAGATATGAAATAATCAGACAGTAAGATTTTTGCTTGCAGCAAAAGAGTGACTCTTTCCACTGTTGGTGGCAGCCCATAAAATGGTGATGGAAGTCTATATAATTTATAGTCATTTTGTCTTAGCAGTACATCAATAACTGGCAGCTATtgcaaaaattgcattttatagAAACTCCTACTGGTGGATTTCTTGGTGTTTCCAAGTCCCAAGTGTGATAGATTTGGTCCAAATTGCAGATGAAGACCATCTTATTCCAGCTATATGAATACATTAAGAACAGCATTTGCACTGCCCTTTTTGTGAAGGGATTTGTGTAAAAAGCTACAACTGTGCAGTACTCAATGTCTGGGCCTGAAAACACAGAATTACATAAACTTAGAGGAAACACTGCACGTGTGTGAGCAACAGCTTAGCTTCCCTTGTTCTGGAAAGGCAGATAAAACTTTTCTAAGCCTGTATTCATAAACCTTTGTGACTgcactttttgtaattttggtACCAATGCATTAGAAAATGTATAACTCTTTATAATACCTCATAAAGCTTTAAGGAAATGAATTCTAgtactttattaatgaattaaacatgttgtaatataaacaacacTGTTCATAATAATGCCATGGTTCATAGCATTACTGCCCTGAATGACTGTGCTGTGcacctttaatatttattaagaaGTATTAAACAATAGGACTATTATAAGTTGTCAAGTGCAGATCAGCTAaacattatttctattatttatattacaagtttaaagctgctatagaCCATGTACATAGGCATATTAATTCAGTTTAAATATTTGTCATTACAAAGCATTACCTTAccaaaattacaaataataataagtacgGTCATAAAGCTTTATACATTCAGGCTTTatataaagtgttactgaaaaaaaaaatgtccaagaTGCTTTTTCATACCTGGTACTCAAAAAGtaccaaaaaagaagaaaaagcagaagaggTGAAGGCCTCCCTTCCATAAAACCTAAATTGTTTGATActttttatgtgtatgtgtgagtgagcaCACAAACTCATAAATGTGGGGATGTTCCAGAGGGAACAATTGAACCTTTTCTATTTGTACAGTCCTCTTGTCCTACATCACATATTTGCCCCTGCAAAGTAGAAGAGCGCTTTTTCCACATTTGTATCtgaacttagaacatggcatttgaaagcatttttatatatttttatacaaaagaaaaaagaagacagacTAACAGTTCAGAAAATGTGTGGAAAGGCATTTGTTTCCAAGTCGTTGTTGATGTGAGTAATTTGTACTTTTACAGTTCCATTACCAGACGGTGtccactgggaaaaaaaaaaaaattacccatGTTTATTTTGAACATTGAATAAATACCCACTATTAgcttatttaaaacattaaatgtagctacatTACAGTGTGCCATTACTTCTTCTCTCCAGATTGGTGACTTAATATTTCTTTATGCCATTATTTGTGCCCATTTTGTACCGTCTGAATGAAAGATGCAAATGAAACATGCAAAAATATAACTAGGCAAGGTTTTATCCATACACATTATATAGATATTAATCAGTGATGTGTTTCCTGATGCACATTGTTTAGgtggaattttaaaaactgtcttCCCATTCGATTGTCATTGAAGGACAGATTTGCTAAACAGGGTGAAGGCTTTCAAATTTAGCAAATAATTGGCTTCAAGAAGTGAAAAAGCCCTGCTATTTCCCACCTTGTTCCTGGTGTTGCTGGGATTGGCGCCAGACCCACCACGATCCCACTCAGAATatagtggttactgaagatgaaggaatgaatgaatgaagtgaatAATTCAACTGAAATTCCTTTTAGTAGGAACTTCTGGTTAGCATTGAAATGATACAATAAATTCACTCTCTTTAGCAGTACAAAATACCACTTTGTATTTAATGCTACAGACATGAAAGTAGATATCACATTATCAGTCAGTCTCTCTCATCTCCACAAGTATAATGGATgatcagtgaatgaatgtgCAGTACTCTCTGTGGATGTGTGTCATAGCGTGAATATCACCCACTCACCCAATTACTGTATCTATCTTACTCCTGTTATAAAAGCCTATTTagtattattgtgtttatattgGGTCTTGTACTTGtgaatttcataattttattcatcttttaaatgtgtacaaaaatcaaaaatttatattattcatatttgtCTTATTCCCTAATCTTATTTTACACAAGATTTTttattgtgtgattatttttccatatt

Function

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0039022 pronephric duct development biological_process
GO:0072015 glomerular visceral epithelial cell development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376333 lncRNA upstream 104704 10186306 ~ 10187126 (+) True G317761
TU376326 lncRNA upstream 134300 10157277 ~ 10157530 (+) True G317754
TU376260 lncRNA upstream 184909 10105766 ~ 10106921 (+) True G317703
TU376171 lncRNA upstream 351593 9939969 ~ 9940237 (+) True G317633
TU376158 lncRNA upstream 412074 9878915 ~ 9879756 (+) True G317621
TU376532 lncRNA downstream 156775 10504163 ~ 10510193 (+) True G317939
XR_004580283.1 lncRNA downstream 170200 10517588 ~ 10520208 (+) True LOC117599937
TU376543 lncRNA downstream 177098 10524486 ~ 10524774 (+) True G317946
TU376562 lncRNA downstream 227426 10574814 ~ 10575152 (+) True G317963
TU376563 lncRNA downstream 227925 10575313 ~ 10575547 (+) True G317964
XM_026925460.2 mRNA upstream 3606 10196108 ~ 10288224 (+) True cadm3
XM_026925461.2 mRNA upstream 3606 10196108 ~ 10288224 (+) False cadm3
XM_026925462.2 mRNA upstream 3606 10196109 ~ 10288224 (+) False cadm3
XM_034314828.1 mRNA upstream 3606 10196711 ~ 10288224 (+) False cadm3
XM_026925414.2 mRNA upstream 105763 10173820 ~ 10186067 (+) True sdhc
XM_026925002.2 mRNA downstream 185596 10532984 ~ 10534451 (+) True ccl20a.4
XM_026925350.2 mRNA downstream 189043 10536431 ~ 10562616 (+) False capn10
XM_034314752.1 mRNA downstream 189043 10536431 ~ 10562615 (+) True capn10
XM_026925349.2 mRNA downstream 189043 10536431 ~ 10562612 (+) False capn10
XM_026925352.2 mRNA downstream 189043 10536431 ~ 10554413 (+) False capn10
trnar-ucu_12 other upstream 104006 10187751 ~ 10187824 (+) True trnar-ucu_12
TU376185 other upstream 313929 9959329 ~ 9977901 (+) False pip4p1a
TU375892 other upstream 876666 9412323 ~ 9415164 (+) True G317390
TU375607 other upstream 1479010 8811957 ~ 8812820 (+) False LOC117599964
TU375135 other upstream 2022632 8268709 ~ 8269198 (+) True G316745
XR_004580322.1 other downstream 189043 10536431 ~ 10562994 (+) False capn10
XR_004580323.1 other downstream 189043 10536431 ~ 10562614 (+) False capn10
TU376560 other downstream 216447 10563835 ~ 10568896 (+) False eif4e2
XR_004580315.1 other downstream 1052496 11399884 ~ 11461068 (+) False per2
TU377149 other downstream 1119911 11467299 ~ 11469499 (+) True G318439

Expression Profile