RNA id: XM_026925725.2


Basic Information

Item Value
RNA id XM_026925725.2
length 1973
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113533529
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11492594 ~ 11496391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGAAGTGTTTTTATCTGACGCCACAGTCTGCTTTCAGGAAAGTGTCAGACACTCACATCAGAGCACATTTACGTTGAGTCACCATGAGCAACAATAGCAGCTGTACATTTGAACATGTGGACTTGCTTATGCAGAAATTGGAGCTGGTCATCTATGTGCCCATCTTTGTGTTTGGCATCATCCTAAATGCCATTGCGGTTTGGgtgttctgctttttttttaaaaaatggactgAATCCACCATCTACATGATCAACTTGGCTGTAATGGATCTGCTCTTGCTGCTTCAGCTGCCCTTCAAGATGCATGCTACGAACAACCTGTGGTtaccaaacaaaaaacatttctgctCTTTCCTGGAAAGCCTGTACTTCATGGCCATGTATGGGAGCATCTACATCATCATGTGCATATCCATGGACCGCTACCTTGGCATATGCCACCCATTCCGCGCCAAGTACCTACGTTCCAAGAAAAGTGTCCGGATTGTGTGTTCGGTAATTTGGGTGTTTGTGATAGTAGCGACTGTTCCAGTTTATACATTCCGAGAAGAGGGACAGAAAGAATTCCACTGCTTCCATGGCTTTTCAGATAAGGGATGGCACCCGGTGCTTATTGTGTGTCTGGAGGTGTTTGGCTTCCTGCTGCCTGCTCTCGTGCTAATATTTTGCTCAGTGCAGAGTATCCGTACCCTGCGTGATCCAAAGTTCACGAGCACTCCTGACAGACAAGCTGGTGTCCGGATCATTTACAGCAGCCTGTGTGCCTTCCTGGTGCCCTTCACACCATGCCATTTTGCAATCTTTCTCCAATACCTGGTGCGCAGCTCCACCATCTATGAGTGTGACGCCAAGACAAAGATCTCCCTGTTTTTACAGTTGTCTCTCAGCCTGGCCAACATAACATGCTGCCTGGATGCCATATTCTACTACTTTGTAGCCAAAGAGGTACGGGCGAGTAAGGACAGAATCAGGATGTCCATCACTAGGATTAGAAGTACAAGTGGCTCAGActgataagaaagaaaaaaaagttttttgatTGCTGATTGTCAAAACATGATGTTGCTTACTAAGGCTCATTATTGATACAGTTATCTGTTTAATATAATGTGCCTCAGAGTCAGAAGAAAAATGGCCATTTTACAAAGATAACTTTTAAAAAGAGGCTGCCGTGGGCCGTTTGATCAGTTGTGGATGTTGTTAAGCTGAAGACAGACTTTAATGCTGGATTAACAAAAGCAGTGACGCTTACCAAGacacatttactcatttttaacTCCTTGATTTTTTATATGGTATGCCTCAGATGTGTAAGATAGAAAAGGGTTTCTAGTCTGAGTCACCTTGGCAGGCTGTCAGAGGTGGTTCTCACGCGATGGGAGCGTGCCGAGCTGAACAGAGatttcagaaatgaattttCAGAAGTTTATGAGGTTTATCTAGACTAATTACTTATAGCACCATTTTGTTAAACTAATCagttttatatactgtatgtcataaGGACATGAGATCCGTTCATGAgaagtttaatatttattcagcagtaaatatttaattggGGACAGGGCTGAGAGTCGCAGAGGATACTGCTACCAGCTTTCTTTAGTTGGGTGAAAGAGTGGGCACAGGCAGCATGCCTGACAGTTTCACTCTGCCTCAGACATGTTTCTCTTTGTGCTACAATTCACATGCCTACTGTACATAGTATCCTATACAATaagcattatttaaaagtaaagctTGTTATTTCTTAAGTGTTTTTCTAATATAactcttttattcattattattttttgaggTGTAATATGGatgtaaaatacaatattaGGTACAGTTAATACTAAGCAGTAACAATCATTTTTGTATTGTTTCCTAAACAACCTTTAATTTTGTAACCATTCTCTTTACTATTTTTGTTGTCTGATAATAAATTTCAATGCTCTTACCATAGAATGGTAACattta

Function

GO: NA

KEGG:

id description
K08413 GPR55; G protein-coupled receptor 55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403404.2 lncRNA downstream 81430 11394881 ~ 11411164 (-) True LOC113533221
XR_004580316.1 lncRNA downstream 81433 11404548 ~ 11411161 (-) False LOC113533221
TU377282 lncRNA downstream 82362 11405374 ~ 11410232 (-) False LOC113533221
TU377280 lncRNA downstream 91092 11400665 ~ 11401502 (-) True G318552
TU377193 lncRNA downstream 305194 11187197 ~ 11187400 (-) True G318479
TU377417 lncRNA upstream 123485 11619876 ~ 11705877 (-) False wu:fb63a08
XR_004580347.1 lncRNA upstream 133179 11629570 ~ 11631921 (-) True LOC117599995
XR_004580348.1 lncRNA upstream 133179 11629570 ~ 11631912 (-) False LOC117599995
TU377432 lncRNA upstream 193098 11689489 ~ 11693334 (-) True G318639
TU377454 lncRNA upstream 305256 11801647 ~ 11801862 (-) True G318660
XM_026925675.2 mRNA downstream 23807 11467120 ~ 11468787 (-) False hes6
XM_026925674.2 mRNA downstream 23807 11467120 ~ 11468787 (-) True hes6
XM_034314683.1 mRNA downstream 167348 11287176 ~ 11325246 (-) False gbp2
XM_034314682.1 mRNA downstream 184440 11287176 ~ 11308154 (-) False gbp2
XM_034314681.1 mRNA downstream 184440 11287176 ~ 11308154 (-) True gbp2
XM_026925340.2 mRNA upstream 53392 11549783 ~ 11572390 (-) True acsl3b
XM_034297713.1 mRNA upstream 188444 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297716.1 mRNA upstream 188444 11684835 ~ 11705835 (-) False wu:fb63a08
XM_026925718.2 mRNA upstream 188444 11684835 ~ 11705835 (-) False wu:fb63a08
XM_034297715.1 mRNA upstream 188444 11684835 ~ 11705835 (-) False wu:fb63a08
TU376553 other downstream 964344 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 2519382 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 2538484 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 2606885 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 3003965 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 51977 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 3235521 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 3731081 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 4190867 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 4190867 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile