RNA id: XM_026925736.2


Basic Information

Item Value
RNA id XM_026925736.2
length 1778
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC113533539
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15338737 ~ 15349506 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCTGTCAGACGGCACGCAGGAGAcgtgtgagcgagtgtgtttgagtgtgtgggtatgtgtgtgtccctCAGAAGGACCATGACACCAAAGCCTGTGGTGACCGTTCCTCCTTGGTGACTCCTCCTCATGCCTAGTCAGGTGCAGAATGGATGAGAGCACGTTTGAGACATTTGAGGAAGAGCTTGGGGCAACACAACAGGATGTTCCTCAACCGAAACATCCCAGACAATCCCGTCGGCCTGAAGTGTATCCACAAAGAAGGGTGAGAGAGGAACCTCTAGTCGTCCAGCAGATCCCAAAGTCTCTACCTCGCGAGGCTCCAGTTTCAAGAGGCGTGTCATTGCGAAAGTCACCGTCCGTTCAGAACGTGGCCCAGATCGAGGCACCATGGGAGGGAGTGACGCTTAACCGCTGCCTCTTCATAGCCATCACTATTCTGGTCCTCACCTCAGGGTGTCAAAGGCTACACGAGGTTCTACGAGGTCGCAAAGATGGGACAGGTATAGAGCCCATAGGTTCTGTGCTTAACGTCAGGCACACTGCAGTAAGGAAGTACCGCATACCAGCACCTGAGCCTGAGACGTCTCTGTGGGACACCTTTTTCTGGTGGGTGAGCGATGATGAAGATAACGACGATGAAAAAGGAAGCAGACGAGGCAAGTCCAGGAAGGTGACTCGAGAAAAAGCTACTCGAGGTCTCAGACACAAAGCCATACCAGACAGGAAACTTCTGAAGGGAAGGGAGGGCAGATTTAAAGCGCGGAGAGATAAAGCAAGACAGGACGAAAAGGAGAGTCGAGAGAGCGTGAAGGCACAAACGGAGAAAGTGAAGAGACTCAGAGAGAAGAAgctagaagaagaaaaaagggaggaaaatgaaaagaagatgGCAAAAAATACAATGAAGGAGAGCAAGAAGGATGCTGCTTAGAAACGGAAGGAAAAGGTAAAGCATAATGATGCTATATAGACGGCAGTGAAGAGGGTGAGGTAGATTACTGGTAAAACTAGAGGAATCAGGAGAGGGACTTtctttttattgtaatgtgatgTCTCAGGGGTGAAATGAAAGGTTCTTCAGGAAGGCATGAGCGCTTAATTTGAGTtggtctgatttttattttatttttatgattgaGCACTAGGTGATAGTGATTGTATGGTAGTGTTCTTTGCTTCACTCATGATCAAGAGGATGAAAATCATTTGGGCTTTTAAAAATGAGCAGATATGTGGatgtaaaatattcaataaaaaaatgaatagaaagaTCCTCATGTTTCCAATAATACATCTATTCGCAATGCAATGAATTTTATACTAAGTCGCATCAATAAATATTAGCTTTTTTGGGAACATTGTTtaagaaaactaaaaataaatacagctgaTTATGGAACAAGCTTTGTTTTTAGGACAtgatctttttttcattcatttatcttcagtaaccactttatccttgtcagggtcacCGGGAAGACAATCCCAGGAACATTAGATACAAGGCAGGAATATATTCTAggtgggacaccagtccatcacagggcaccattcacacacacacacacactcactcattcacacctgggagCAATGTAATGTAGACAATTCTGGCATCTGAcaatctactggcatgtttttgagaggtggaaggaaactggagagcccagaggaaatccacatggacacagggagaacatgggaAACTCAGGACAAgcagtaatctgagctcaggatcaaaccagaaaCTATGGAGCTATCTTTTTCTTTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU380013 lncRNA downstream 34712 15303811 ~ 15304025 (-) True G320880
TU380004 lncRNA downstream 51860 15286084 ~ 15286877 (-) True G320871
TU380003 lncRNA downstream 52796 15285638 ~ 15285941 (-) True G320870
TU380001 lncRNA downstream 54312 15283635 ~ 15284425 (-) True G320868
TU380000 lncRNA downstream 55997 15282360 ~ 15282740 (-) True G320867
TU380032 lncRNA upstream 30629 15380135 ~ 15460416 (-) True G320897
TU380184 lncRNA upstream 242654 15592160 ~ 15592616 (-) True G321032
XR_003403423.2 lncRNA upstream 337576 15687082 ~ 15724356 (-) False LOC113533563
XR_004580366.1 lncRNA upstream 337576 15687082 ~ 15717536 (-) False LOC113533563
XR_003403425.2 lncRNA upstream 337576 15687082 ~ 15713172 (-) False LOC113533563
XM_026925696.2 mRNA downstream 6076 15329012 ~ 15332661 (-) True plekhj1
XM_026925177.2 mRNA downstream 31957 15304278 ~ 15306780 (-) True LOC113533213
XM_026925032.2 mRNA downstream 58771 15274921 ~ 15279966 (-) True si:ch211-155e24.3
XM_026925034.2 mRNA downstream 66578 15269159 ~ 15272159 (-) True LOC113533136
XM_026925033.2 mRNA downstream 66581 15269159 ~ 15272156 (-) False LOC113533136
XM_026925734.2 mRNA upstream 114110 15463616 ~ 15489260 (-) True onecut3b
XM_034297689.1 mRNA upstream 244929 15594435 ~ 15648744 (-) False LOC113533480
XM_034297688.1 mRNA upstream 244929 15594435 ~ 15648744 (-) True LOC113533480
XM_026925125.2 mRNA upstream 504997 15854503 ~ 15861482 (-) True zgc:85843
XM_026925307.2 mRNA upstream 574715 15924221 ~ 15929067 (-) True polr2ea
TU379938 other downstream 109481 15227472 ~ 15229256 (-) False LOC113533479
TU379789 other downstream 593250 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3790298 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4810487 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 6365525 8969781 ~ 8973212 (-) False LOC113542985
TU380215 other upstream 337752 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 337752 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1008068 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1270127 16619633 ~ 16619734 (-) True LOC113533663
trnal-uaa_3 other upstream 1624182 16973688 ~ 16973770 (-) False trnal-uaa_3

Expression Profile