RNA id: XM_034314827.1


Basic Information

Item Value
RNA id XM_034314827.1
length 5870
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC113533545
representative False

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14807967 ~ 14818873 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATGGCGTCGGTCGCTAGTCAGCAGCCATTTTGGACGCGCTTGAGCTTTTCCCATGTCAACACTACAGCACCACTGAAAAAATCCTAAAAGACAGAGTCTTTCTCGGGTCTCCGTCCATCTCTCTGCAGGAATATGTTTGCTCGCTGGGTGACATTGGCACTCATTCGGGGAAGTTTGTTAGCAGGTCCTGGGCAAGGTGAGGTTGGCactagagagtgtgtgtattataatgaTAACTGGCGAGCTGAGAAGACTAATCAGAGTGGGTACGAGAGATGTGAGGGAGAAAAGGACAAGCGACAGCACTGCTATGCATCCTGGATCAACTCTTCAGGAACCATACACCTGGTGAAAAAGGGCTGCTGGCTCGATGACTTCAACTGCTACGACAGacaGGAGTGTGTGGCCACAGAGGAAAACCCTCAGGTATTTTTTTGCTGCTGCGAGGGAAATTACTGCAACGAAAGATTCACACACTTACCCGAAGTGATTGCTCCTGCAGTGAAGATCCAGCCTCCTCCAGTGGGACCGTCTCTGCTTGGTGTGTTAGCGTactctctcctccctctgctTGTGCTGTCTCTGGCCTTGGTACTTGCATGCTGGACTTACCATCAGCGCAAAGCTCCGTACGGCCACGTGGACATTAACCAGGGTGTGGGTCctgctcctccatctcctctagTGGGTCTGAAGCCACTACAGCTGCTGGAGCTGAAGGCAAGGGGGCGCTTCGGGTGTGTGTGGAAGGCTCAGCTACTAACCGAATATGTTGCAGTCAAGATATTCCCTGTTCAGGATAAGCAATCATggcagaatgagagagacattTACCTCACTGAGGGACTAAGACATGAGAACCTGCTACGCTACATCTCTGCTGAAAAACGAGGAACCAACCTGCAAATGGAGCTCTGGCTTATCACCGAATTCCATGAAATGGGTTCTTTAACAGACTATCTAAAGGGGAATGTGGTGAACTGGTCTGAGTTGTGCCACATTGCAGAGAGCATGACCCGAGGCCTGGCCTACCTACATGAGGATCTGTCCTACAGACTGGAGGGGCCTAAACCAGCAATCGCACACAGGGATTTTAAGAGTAAGAATGTGCTGCTCAGGACAGATTTGACTGCTGTGATTGGAGACTTTGGTCTGGCTGTGCGCTTCGAACCAGGGAAGCCACCAGGAGATACTCATGGCCAGGTTGGTACTAGGCGCTACATGGCCCCAGAGGTGCTGGAGGGTGCCATAAATTTTCACAGGGATGCATTTTTAAGGATTGATATGTACGCTTTGGGCCTGGTGCTCTGGGAGCTCTTGTCCCGCTGCACTGCTGCTGACGGGTCTCTGCATGAGTTCATGCTCCCGTTTGAGGAGGAGGTGGGTCACCACCCATCTCTGGAGGAGCTGCAGGATGTGGTGGTCCATAAGAAGATGAGGCCCATGCTGAAGGACTGCTGGCTCAAACATCCGggATTGGCTCAGTTGTGTGAGACAGTGGAAGAGTGTTGGGACCACGACGCAGAGGCCCGTCTGTCCGCGGGCTGTGTGGAAGAACGCATCATCACCATCGCCAGGGCAAACAGCACCACCAATAGTTCTACCTCAGAGTGCCTGGTCTCCATGGTTATGATAGACAGCGACTCAGCTCTACCACTCAAAGAGGCGAGCATTTGAATGGTGTCAGTCAGTGAAGCAGGAACTAGACACTGCTACACCACTAACATCAAACCTCTCCAGTAATGTGAACTTTGCTGCTCTTAGGAGATTTTCTATGGAGTTAAACAAAAAGATCTGCAAGCAAAATATTAAGTATCAAAAATCAGACTCTGTTCCCAAAAAGTAAGTGTAAACAGCAAATTAGCTAGCTGTGCTCACTCAAGGAATTATGGCATTTCACCCATGAATTTCAGGAGGAAAatgtttaggtttttttttgtttgttttttttccatttgtttgtttttttttttaaagtttgccTTTAGTTGTTGATCATTTTGCTTGTGGATCTTTAATATCTTTCGCACAAATTTACCTCAGTAATTTTCATTTGGTTGACTTTTACTAAACCTCACACTATATCTTCTCCCTTGCATtcagaaagcacaaacacaacacagaagCTGAAGCCTCATACAGCAATCAAATGACCATTTCACAGTGCACTCGTTACCTCATGTTTTTGCTGGTTATTAGAATTCGAATGTGAATTTTTAAGTGAGTTTACTTTTCCTAATATCTGCATCCACTCCGCAAATACCTCCATTCAAAGGACTTGGCTCGTGAAATCTACATTCCTCACTTGTCTTTATGCTGGTGATCAGTGACTCGACAAAGTGGAGTGAGAAGCTACAGACTGTTACACAAAACCAACCTCCGTTTGACCGAGTACCTCTCTTACTACTcagtgatcttttttttataggtGCTAGTATGTTTAGTTTCTTTGTGAAAGTGTTTGACGTGTTTTATGAAGAATGATATGCTTGTTAGAGAGCAGTTGTCTGGAACACTGGAATCAAAAGGCAGCAGGACTGTTTTGGTTTTCTTCAGTATTGGTATATTTTAGCATAGTCTCTGATTATCTGTCCTTTGACAGTTTTATCAGGCAGATTATAAccatgtgtggtggtctgggaaaacccgtCAGATGTCGCTGCAACAAATTCTgaaaaacatccaaaaacatTGAGCCAAACAGCCAGTAATATACAACAAGAAAACCTAAATAGATTTTACTACAACAATGTGAGGAtgttttatttaggctactttctaactttgctgtctgcctgcaaagatcatgctgtgtaaggagccagtttaacaaacaaaagaagTAAAACCAgccagtctgcctaaagatgtctaaaaccctGCTAGCTgagtgtgattttctcacaggCTTTTTTACGATAATTACGTGCTatagtgaaacagacataagcctCATCTATTTAGTTTGTAATCAGACACCGGCTGTCATCATCAAAAAGGGGAAGAGtgcttacacacactacagatgaCAGTGAAGaaggtttttaaaaagataataGTAAGAAGAAATTTCACTGACAGAACTCACTGAATGATTCAGTAATGATTCCCCATCaatgttagtgtgaacagagatcagtccAGTGAAGAGATTATGATGAGGCCTGTGTTTAAATGCTACGAGTggcttttacctcaggtgatgataatcaaagtgattaATGGTAATAAATCATAGTAatggttataaatgtagaagtAAGAACGGTGTCTTTCAGAGGAGATGGAATTGAATTTATAAATGCCTTTTTCACTTTCGGTGGTAACCAGAATTtgaaatgctagaactttacttctgtTTGAGATATCTGCACACAAATGTtagttcaggaaagcctgtagttttcagaatgatatatagtagaaaatgtccatctgaccatgtgaagggttttcccaggcaaCCACACACATTTGTACGCATAGTCTTTGATTATTGAACCCCAGTGTAGCGTCTACAGGTTGAGCATTGTTACACGGAATTGCCTTTATGCCCTTCATGCTTTAGTATTATGCCTACATATTTGGGGCAGGGTCTCTGAAAGTGTGTAGGCGAACACATAATGTGTGCTTTACGGACAGGTGCTGCCTATGTAATGAGCAATAGCACTGACGCTTCAGGATTAATGAGGGTGATTTTGTTTGTGATATACTACTcaggtaaatgtgtgtttgtatgtgacTGGTAACTGTATGgtgtctgtgtatttgtgtgtgtttgtgtgtgtagtttttaaaTCGCACAGCTTTTAGCAATAGAGCTCAGCAGTAGGAACCTCTCAGTGGAGTGATGCTCAGTAGAGTTGGTGCTTTGTGTTCCTATTTACCGCTCCTTCAAAAACCAGGCTTATTGGATCACATCTGCCAGTGTGTGTTGGCTGAGAATTTGAAGTTTAGTAGTAATATAACAATTCTGACTGCATTTAGGTGAGtattctattgtttttgtggtagaaatgtaattaaatgtatgGCTACTTTTTATGAttgagattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtgctgtgatatttttattttcgtGCTCACAATATACCTTATGTGAAGACAACAGGTCTGTGGCTTTTGTGCACTgggtacattttcatttatttcgatttttttttttttttttttgtttttttttttttgttgttgttaaactCCATAAAATGTGGAACCTACCTCACTCTGGAATAATGGTTATGTTTCCAAACATTTTACTCCTTCAGCTATATTTGAATTGTATTTATATGTTACAGTCTGTATACAGCATCATCTGTAACCTCTACCTGAGCCAATTCAATAAGCTTGACTGACACTTGTAAACATATACTGAGATCAGGGATTTAAAGGTTAACCTATGAAGTATTACAGCTGTCTGCAGTTTGATTGTGCcaaatttcttttaaatggattaaagcagcagtgctACTAGAGTGTTCATACatggaagattaaaaaaaaaatgttacaaatcaTAAGTGTAGTCTTAACACAAGCTATTTGGCATGCACACCTCTTTGCCAGATTGTTAAGCTTGAAAGCTGctctgatttctgtaaatctaatgctgcatttgactccACTGCTTGACTCCTTGTGTTTCCAAGTAGGTATTCAGAGTTGAGGGGGTGTcgtctttggtttttcctagttggAGGTTGGAAATTCCAAATTATGAGCTTAGTCAAACACAGCGTAACCCTCGCCATATGCCTACACCTAGGTTTCGTACAtgcaaaatcatttttaaaatggttcaAAATCAGGAAGATGGTCTTAACACAAATAATTTGGCCTGCTCACCTTGGGGCATGTTTTTCCAACATCCACAAatcatataaattattaaaaaaaaaaaaaaaaaaaaatcataaaaggtACCAATCCACAATGCTTTGTGAGTCATTATCTGCTGGAATCGTAAGTTTGGAAGTTGTGGCTTCTCTTTTCcccataaccctaaccctagtccTATGCATACAGGGTTCataaatgcaacatttttttttaatggtaaagtttaaaaaaatcatatattcgTCAATACACAAAGAATCTGCGCTACATCTCTATATGTAGTCTTATTCCAGAATTTAAAGTTTAGAAGCTGTATGCGCTACACCTAGAGTATTCATACatgaaaaagttttttgttttgtttaaaatcgTAAAAGtagggcaaaaaaaaacctgtgtggCATGGTTTTCCAGAATCTTGAGTCTGGAATCTGTGTACACTCTGGTTTCTGTAACTCTAATACTAGTCCTATACTTATCGCTTTAATACAATCAAAATTTCAAGAAATTGTTAATCACGTAAATTGTAGACACACAAAGAATTTAGGCAgcaaatgtctgtgtgtggtctTATTCCAGCAGATATAAGGGCaaatatgtttaatttcttACACTCCAATCTAGAAAGAAGATCTTTTAGACCATCAGCATTTATTTGGAATGGTGCTGAATGACAGTTGTTAAAGCTGCATATACATGCTGTACacacccctgtgtgtgtgtgtgtgtgtgtgtgtggggcactCATCCAAGTAGGATCATCAACGATCCTGCGTTTCACAGACAGACTGGAAGATACCAGATGTTAAAGGCttcttattaaatgtaaatttattttattattattattttttttttagttctttattGGTGCTTGTGTGATTCTGTTGTCTCACTGTTTCTCTCACTGCCACATCCAGAATTTCACTTAATTAAAGATGGCTAAGTACAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU379728 lncRNA downstream 148024 14571684 ~ 14659943 (-) True G320640
TU379721 lncRNA downstream 175796 14627785 ~ 14632171 (-) True G320635
TU379329 lncRNA downstream 356944 14361947 ~ 14451023 (-) True G320317
TU379346 lncRNA downstream 412054 14391988 ~ 14395913 (-) True G320332
TU379304 lncRNA downstream 489642 14318057 ~ 14318325 (-) True G320294
TU379867 lncRNA upstream 245260 15064126 ~ 15065780 (-) True G320767
XR_003403412.2 lncRNA upstream 276811 15095677 ~ 15104463 (-) True LOC113533367
XR_003403411.2 lncRNA upstream 276811 15095677 ~ 15104460 (-) False LOC113533367
TU379941 lncRNA upstream 410737 15229603 ~ 15230010 (-) False LOC113533479
TU379997 lncRNA upstream 462569 15281435 ~ 15281638 (-) True G320864
XM_026925531.2 mRNA downstream 35700 14766090 ~ 14772267 (-) True yju2
XM_026925515.2 mRNA downstream 43151 14748928 ~ 14764816 (-) False shda
XM_026925762.2 mRNA upstream 16036 14834902 ~ 15035981 (-) False LOC113533549
XM_026925759.2 mRNA upstream 16036 14834902 ~ 15035981 (-) False LOC113533549
XM_034297721.1 mRNA upstream 16036 14834902 ~ 15035981 (-) False LOC113533549
XM_034297720.1 mRNA upstream 16036 14834902 ~ 15035981 (-) False LOC113533549
XM_026925758.2 mRNA upstream 16036 14834902 ~ 15035981 (-) False LOC113533549
TU379789 other downstream 62480 14731912 ~ 14745487 (-) False theg
trnaw-cca_17 other downstream 3259528 11548368 ~ 11548439 (-) True trnaw-cca_17
TU376553 other downstream 4279717 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 5834755 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 5853857 8904014 ~ 8954110 (-) False pitrm1
TU379938 other upstream 408606 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 868392 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 868392 15687258 ~ 15724356 (-) False LOC113533563
TU380669 other upstream 1538708 16357574 ~ 16367004 (-) True G321462
XR_003403441.1 other upstream 1800767 16619633 ~ 16619734 (-) True LOC113533663

Expression Profile