RNA id: XM_026925748.2


Basic Information

Item Value
RNA id XM_026925748.2
length 2710
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC113533546
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13390167 ~ 13410811 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tacccacaatcctgTGCGCTGTGTAGAACAACAATCTCCTCGGCTTTATGCTCAGCTAAAAACACAGAGACGGAGTCGCTTTGGGAATTCACTCAGCGGGTCTGCACATTTAAAGACTGTCACCTTTTCGACATTGCGAACCCAAGCACTATAAATAACAATCAAAACCAATGGACCAGGACTACGAGCGACGGCTGCTACGGCAAATCAATATCCAGAATGCCAACGCCAGCCCCATCAAAGCCACAGAGGTCATGTGTGCACTGACCCCCGCTAACTCTCCTCTATCCTCCCCAAGTAAACACGGAGATCGCTTCATCCCATCCCGCGCCGGCGCCAACTGGAGCGTCAACTTCCACCGCATAAACGAGAACGAGAAGTCGCACAAtcaaaacagaaagacaaaagacGGCACGTCAGACAACGGTAAAGCAGATGGCCTGGCGTACTGCGCGCTGCTGAAGAATGAGCTGCTGGGAGCAGGCATCGAGAAGGTGCAGGACCCTCAGACGGAGGACAGGCGGCTGCAGCCCTCAACACCTGAGAAGACAAGTCTGTTTAGTtaTTCTCTAAGTGCCAAGCGTTCGCTCCCTGATGACGGCAACAGTGTCTCTCCTTACTCATTATCTCCTGTCAGCAGCAACAGTCAGAAGCTGTTACGATCTCCACGGAAGCCCATGCGCAAGATTTCCAAAATTCCTTTTAAGGTCCTGGACGCCCCCGAGCTGCAGGACGACTTTTACCTCAACCTGGTGGACTGGTCATCTTTAAACGTGCTCAGCGTTGGCCTCGGGACCTGCGTGTACCTGTGGAGTGCCTGCACCAgccagGTGACGCGGCTGTGTGATCTGTCAGTAGAAGGTGACTCGGTCACGTCAGTAGGATGGTCAGAGAGAGGAAACTTGGTGGCAGTGGGCACTCATAAAGGCTTTGTACAgatttgggacgcagccgcAGGGAAGAAGCTGTCTGTATTAGAGGGCCACACAGCCAGAGTTGGAGCCTTAGCATGGAATGTGGACCAGCTGTCTTCAGGCAGCAGGGACCGCCTGATCTTGCAACGTGATATTCGAGCTCCTCCGCTGCAGTCTGAGCGCAGGTTACAGGGCCACCGACAGGAAGTGTGCGGCCTCAAGTGGAGCACTGATCACCAGCTCCTTGCCTCCGGTGGCAATGACAATAAGCTGCTGGTGTGGAATCACTCGAGTGTCTTACCCATGCAGCAATACACAGAACATTCAGCAGCAGTGAAGGCCATCTCCTGGTCTCCTCATCAGCACGGCCTGCTAGCATCTGGGGGCGGCACTGCCGACCGCTGCATCCGCTTCTGGAACACGTTGACCGGGCAGCCACTGCAGTGCACAGACACAGGCTCGCAGGTCTGCAACCTGGCCTGGTCCAAACACACCAATGAACTGGTCAGCACACATGGTTACTCTCAGAACCAGATCCTGGTGTGGAAGTACCCCTCTCTGACACAGGTGGCCAAACTCACTGGCCACTCCTACAGAGTACTCTACCTGGCCATGTCTCCAGATGGAGAGGCCATAGTCACAGGAGCAGGAGACGAGACTCTGCGCTTCTGGAATGTCTTCAGCAAAACCAGATCTACCAAGGAATCGATATCAGTGTTGAACCTGTTTACGAGGATCCGATAATATTTGTGCACATTTGGAGGTTCTAACATTTAGGACTTGTATACACTGATCATTAACACGACAGACTGTGTGAGTGATGGACACTTTGAGGCCCGGCCTCCTTTCTGTGGCTTTGTGAAGAAGACAAGGGAAACGTGGCAACTGCGTCCTCTTACGTTTTACTTGAGTGACAAAAGGATGTATTACTGCCAAATGTCAGTGTGAATGTTTAGCCGCTGgtttttgtaagtttttttttttttttttcaacattatggttttgtttttcatgactGGCtacagaatcttttttttttcccacaatgtGCCATTTGAGTTACAAGCTTTGTGTCCATCAGCCTTAAATGCAATGTTGAAATAACTACAGTAGGATAGTAGTAGGCCTTGGAATATTGCAGCCTTGGTTGTTAATATATTTGTCTTTGAACCCTTATGTACTCTTGATTGTGTTACTAAAGGATCAGGCCATATCAGAGAaactgcatttaattttttctaGGTGTTTAATCAATGTCACATACTAATTCTACAAAAATATATGAATCAGTGTATACAGTAGCAGATATTCTGTTTTAAATCCTGTTTTTAAGCATTAACTAAAGCAGAGTCACTTTTAAACAAGAATACAGTGTTGTCTCATAAATCACATCCTTGTGAAACCACTATTTTAATTCAGAAATCTAATTTCTCATGGTATAAAATTTAGTCCTTGGCACTTATTCATAttataagatttattttgtcatttcccCCCCCCTGTTTTTACaaatgagggttttttttcccactcatCTCATGGTGTAAATGATGTGTTGTATCAGTGAGAATGaatgctatttatttaatatgtgtGACTGCAGTGACTTGTTGAATAACTGATACTTTGTGTATGTTGAAAAATGGgtgcttgtttttatttgccATTCACAACCACGTACAATATGTTGTCATTTTGTAACAGCTTaaagaatgtttaaaaatatacattaagtaaaaaatgtacattttctcatcaaggaaaatgaataaaacttaAGTGTTCTATGGtttat

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU378196 lncRNA upstream 84055 13239147 ~ 13306143 (+) True G319342
TU378192 lncRNA upstream 144928 13202033 ~ 13245270 (+) True G319340
TU378125 lncRNA upstream 232469 13156524 ~ 13157729 (+) True G319275
TU378124 lncRNA upstream 235766 13153131 ~ 13154432 (+) False sema6ba
TU378185 lncRNA upstream 241336 13148652 ~ 13148862 (+) True G319334
XR_004580330.1 lncRNA downstream 7744 13418555 ~ 13421383 (+) True LOC117599983
TU378293 lncRNA downstream 94295 13505106 ~ 13510727 (+) True G319415
TU378685 lncRNA downstream 178788 13589599 ~ 13590316 (+) True G319755
TU378818 lncRNA downstream 446154 13856965 ~ 13894441 (+) True G319867
XR_004576917.1 lncRNA downstream 493716 13904527 ~ 13910280 (+) True LOC117595740
XM_026925890.2 mRNA upstream 84761 13299508 ~ 13305437 (+) False prkab2
XM_026925889.2 mRNA upstream 84761 13299513 ~ 13305437 (+) True prkab2
XM_034314561.1 mRNA upstream 104946 13267754 ~ 13285252 (+) True sema4e
XM_026925325.2 mRNA upstream 124751 13253610 ~ 13265447 (+) True stap2a
XM_026925726.2 mRNA downstream 11513 13422324 ~ 13425966 (+) True fem1a
XM_026925076.2 mRNA downstream 26224 13437035 ~ 13565203 (+) True LOC113533157
XM_026925075.2 mRNA downstream 26224 13437035 ~ 13565203 (+) False LOC113533157
XM_026925077.2 mRNA downstream 26224 13437035 ~ 13565203 (+) False LOC113533157
XM_026925079.2 mRNA downstream 26224 13437035 ~ 13565203 (+) False LOC113533157
TU378000 other upstream 617331 12765055 ~ 12772867 (+) False G319170
trnag-ccc_6 other upstream 1817301 11572827 ~ 11572897 (+) True trnag-ccc_6
trnai-aau_17 other upstream 1841010 11549115 ~ 11549188 (+) True trnai-aau_17
trnap-agg_14 other upstream 1842019 11548108 ~ 11548179 (+) True trnap-agg_14
TU377149 other upstream 1920699 11467299 ~ 11469499 (+) True G318439
XR_004580321.1 other downstream 426622 13837433 ~ 13895665 (+) False LOC113533270
XR_003403405.2 other downstream 426622 13837433 ~ 13895665 (+) False LOC113533270
TU379509 other downstream 1416454 14827265 ~ 14828771 (+) False ly97.3
TU380255 other downstream 2458205 15869016 ~ 15870995 (+) True G321088
TU380359 other downstream 2519141 15929952 ~ 15936768 (+) False gpx4b

Expression Profile