RNA id: XM_026925752.2


Basic Information

Item Value
RNA id XM_026925752.2
length 1366
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC113533548
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10570185 ~ 10584166 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCACTAAAGTGTATgctcacattctcacacacaaaacctgcaaTCTTTAAGGATTTCCTAGAAACCTCacaatcaacagaaaaaaaaggtcatGTCCACTATAACAGCCCAGCCTTTACCTTATGGtctagaaagagaaaaacacattgaGATGCTTTTTAGAGCTTTCCACCAGAGGTGGAGGTCCTCCACGGACCCTCAGGACCTCGCTACCACTCCAGCTCCAACACAAGGTCCCGTCAGTGGAGATCTATCACCTACATTCCAGGCTGCAAGCTTGGAGACAAACAGGCATAAAGGAGAGCAGTGGGTTACAGAGACATTACCGGCAGGTCTGGCTGCTCTGAGAACAGTCAGCCAAATACACATAACCGCTGTACCTGAGCTTCAGGGTCCCCAGTGCATTTCCCGCAGGACCTACAGTGTTGCTGCAGAAACCAGGCAACTGTTTCTGGCTGTGGAAgagagctcatgtgtgtgtatgcagtgctGTGGTCCTGCTCGTGCCTGCTTCTTGCAGGCTTTTGACCAGGATCGGCAGAAGATTTTCCTATTTGAAAGGCCACTTAGAGCAGATATGTGCTGCCTGGGCTGCTGCCTGATGGAGATGAAGGCCTACACGGCCCAGAGGGAGCTCATTGGCACTGTCCaccagagGTGGAGTATGTTCACACCCTACTTTGAGGTGTGTGACTCTGCAGACTCTCCCTTCCTGAGGATACAAGGCTCCTGCTGTCCAATCCGTTGCCTCTCCGACCAGGAGTTCCAGGTTGTCTCCATGATTGGTGACCGCATTGGAACGGTATGGAAAAAGTGGCCAGGCTACAATGAAAGCTGCAACATGGACCATGAACATTTTGGGTTGGATGTCTCTCAGAACATAAATGTGAATACCAAAGTGTTACTTCTAGCAGGTACATTTCTCCTGAATCATATGTTTTTTGAAATGAGCTGAACCAGCAAAAGAACATTTGAAAACCGGCATCGTTGGACTGTAAACATCTGAAAAATGTCTTGAATTTCCAAACAGCCACTGTAAAGACTTTATATAAACTTTGAACTACTGGAATTTGATACGAATAACCCTGATATGAGTAAAATACATGACTGGAGTTATATCACAGTAAAATGCTATTTCAACTAAAACTATCATTATTTAAACTATAATCTCCAATTTTGTTGCAGTGTTTGCCACACCTTACTGATGATATTTATTTGCTGTCCAAACACAAAATTCAACAATACTTATGTCTATACTCATTTAAGtaattgttcattaaaaatacattgtaGCTCTTCACTGAATTTTTGTTGCTTGGGATTCATTGTGTACTGCAGCAttttggatttgaaatgaaactaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU376575 lncRNA downstream 1280 10567748 ~ 10568905 (-) True G317976
TU376576 lncRNA downstream 7657 10562367 ~ 10562528 (-) True G317977
TU376550 lncRNA downstream 43711 10526265 ~ 10526474 (-) True G317953
TU376540 lncRNA downstream 47757 10520613 ~ 10522428 (-) True G317943
TU376534 lncRNA downstream 49922 10518471 ~ 10520263 (-) True G317941
TU376759 lncRNA upstream 138740 10722906 ~ 10723111 (-) True G318127
TU376760 lncRNA upstream 138982 10723148 ~ 10724215 (-) True G318128
TU376845 lncRNA upstream 257502 10841668 ~ 10843291 (-) True G318198
TU376849 lncRNA upstream 261557 10845723 ~ 10847783 (-) True G318202
TU376850 lncRNA upstream 261557 10845723 ~ 10847783 (-) False G318202
XM_026925864.2 mRNA downstream 41906 10527350 ~ 10528279 (-) True ccl20a.3
XM_026924978.2 mRNA downstream 109559 10393883 ~ 10460626 (-) False camsap2b
XM_026924977.2 mRNA downstream 109559 10393883 ~ 10460626 (-) True camsap2b
XM_026924979.2 mRNA downstream 109560 10393883 ~ 10460625 (-) False camsap2b
XM_026925321.2 mRNA downstream 177678 10347841 ~ 10392507 (-) True wdr47a
XM_034314618.1 mRNA upstream 352 10584518 ~ 10596849 (-) True chrng
XM_034314621.1 mRNA upstream 352 10584518 ~ 10596848 (-) False chrng
XM_034314620.1 mRNA upstream 353 10584519 ~ 10596847 (-) False chrng
XM_026925615.2 mRNA upstream 353 10584519 ~ 10596847 (-) False chrng
XM_034314619.1 mRNA upstream 354 10584520 ~ 10596847 (-) False chrng
TU376553 other downstream 41935 10527282 ~ 10528250 (-) False ccl20a.3
TU375761 other downstream 1596973 8969781 ~ 8973212 (-) False LOC113542985
XR_004580311.1 other downstream 1616075 8904014 ~ 8954110 (-) False pitrm1
TU375659 other downstream 1684476 8883649 ~ 8885709 (-) True G317176
XR_003404406.2 other downstream 2081556 8477223 ~ 8488629 (-) False vcpip1
trnaw-cca_17 other upstream 964202 11548368 ~ 11548439 (-) True trnaw-cca_17
TU379789 other upstream 4147746 14731912 ~ 14745487 (-) False theg
TU379938 other upstream 4643306 15227472 ~ 15229256 (-) False LOC113533479
TU380215 other upstream 5103092 15687258 ~ 15717495 (-) False LOC113533563
TU380217 other upstream 5103092 15687258 ~ 15724356 (-) False LOC113533563

Expression Profile